Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0012970 | OGI:11045580 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:15139058-15143578 | ||||||||
| Gene Symbol | SCP57, OsSCP57, OsSCP58, SCP58, SCP59, OsSCP59, OsSCP60, SCP60 | ||||||||||
| DNA seq | TGGCTTCACGATCATCCCCAGTTCTTGTTGAGTCCGCTGTATATTGGAGGTGACTCATATAGTGGTATCATTGTACCTACACTTGCGCTAGCGATCGATGAAAGTAAGCTTCTTGCCTTGTGAATGGATAATTTCCTTAGACATCCTCGTACTGTTACACAACATTAAATTTGATCAACAAGCAGTTTCGGAATATATTTCGGTAAATAATACCATCTCTCATATGGGAAATGGTTGTCACCATGTATCAATTACTATCACAATAATTACTAGAAAGATTTTTCTTTTCCTACTAACTAAATACTATCACAACAATATTAGGACAGAGATATATATATATATATATATATTTTTTATTCATGAGTTAAAGACAAATTTGGTGTTCACTTTCTGCGCGGATTAATTGTGCGTGTTTCCAACTACTAACTACTAACTACTGATTATGCATCTTATTTTTCAGGCAATGATTCAGGAGATAAGCCAATTTTGAATCTCATGGTCTGATCGATCTTATCAGATAAATATCAATCATGAAATTTTATATTTGGAATCTTAATTACGTCAATAGTCTACATAAATTGCTTGTTAATGTGTACTACCAATCTGCCCTGTAATTAACTTTTGCCTTCAACCATTTTATTTACCTTGTCTTTATAACGCAGGGGTATGTTGCTGGCAATCCAGTGACCGATAGCCAATTTGATGAAGATGGTAAAATTCCATGTCTCCATGGCATGGGACTTATATCCAATGAACTTTATGAGGTAATCCATAATCCAGTAATTAATAACTTTATATGTTTCCTATAGTACATTCAGCAAATATTTGTAGGTATTAATTCCAAAAAAAAAGACACCGGCCTGTTTCATTATGAATAACAGATCACGGCAGTATATATCTGACCAACTAGGCAATATTCTAATTCTTTTCAGCTGAAAGGATGAATAGGATGATGGAGTATCTGATTTTTTTTTATAATACCCGAGAGCACGAACTAATAAATTGACAATTAACTATATTACAAAGTTGAAAAGTTGCTTTTAAAAACATATTCTACCAACCGTGTATATATAATTTGTTTTATAAAATCATAACGTTTAGCTTGCGAAGTGTGCTGCCCAAAATATTTATTCATACATGACATTCGAACAGGGCAAAAGGTACTATTGCCTACGTGCAAAATCTATTGTAATATTTCTTACATATTATATACTGACCACTCAAACCAATTTTCTACCAGCATGCTAAAGAAACCTGCAGAGGGAAATACAGTGCCCCAGGGAATGCTCGGTGTGAGCAGTCTATCCAAGCTATACGCAATGTAAGTATTCCAAGAAAAACTATACTCCCTCCGTCCCAAAATGTATAATGGCGTTGATTTTTTATATGACGTTGAACGACGATGTTGACTTTTTATATAACATTGAACCATTCATCTTATTCAAAAATTTAGATTAAATATGCAAAATTATAAGACAACATTATAATTTCTTTGATGATAAGACAAGTTAAAACAAAATTAATATTATTTATATATTTTTTCATAAAATGAATGGTCAAATATTGTGCTAAAAGTCAATGGAATCATATATTTTGGGACATAGGTAGTATCAGTACTAGCTACTGTTTGTGTGTATACAATTGTCAATAATGTAATTGAAATTGCTGTGTATAGTTCTCTGTTATGTGGCCTAATTACATATTTTACAAATTAATCAGTGCACAAAGGACATCAACATGCTACATGTTCTTGAGCCATTATGTGAAGAAGTCTGGAGCCCCAGGATCCATAACACATCAGCGACAGATGGAATGAGTAGGCTCATGCTGGAGTCTGCTCGTGCTGCTGATGATGACATTATTGAATTCAAGTGTAGAGTTGAGTGCATGAAAAATACAACATTAATTACTACATCCCATTGAATTCCAATTTATCTGCTCTAGTTTTCCTTGGATAGCACTTGACCTAAGAAAGTCTAATTTGGCTTATTTACTGCAGAAAGCTTCCTATGTGGTTTTAAAAATATGGGCAAATGATAAAACTGTAAGGGAGAGTCTTGGTGTGCACAAGGTATTTCTACTATGGTACTATGTATGCTTCCATTGACTTTTCAAAGTATATGCACTTTGCTACTGGTGGATGGAAATCCAAAGTTTGCAAAGTGAATATATAAATTCACTTTGCAGTTGGTCTTCCGCATGAAATTAGGCCGATTATCATATTACAAATTCAGCATTGTCCTTACAGAAGGCTAATCATTCTTTGAATCCTTTTATATCAGAATAATTCTTTGAACCGAAACTCAGCCTATCCGCTGTGAAGGCCAAGGGAAAGGATTAATTTGCATTGCATGATAGTTATGCATATATACGAGTTTAATTCATAGAAGTTGCTATACAATACAGGGAACAGTTGGAAAGTGGACAAGATGCAATTACGATATAGATTACATTAAAGATGTGTATAGTACAGTGGAGTATCATTTGACGCTAATGAGAGAAGGATACCGATCATTGATATACAGGTAATTATATATCGAACAAATAATTGATCAATATGTACACTTATGTCCTCTGATACCGAACTGTTGCGTTTCTCTTATTCACAAAATATACATGCAGTTATATATTCTTACATGGAACTCAACTACTATACATATTGGAAACTAAAATTCTTTTATAAGATTATGGAATCCTCGGCTACATCATGCCATCTTCCGATCCTTTATATATTAAATTTGATTGCAACCTTGCGGTTCAAATCCACCAAATTGCTCTTCTCGTCGATAGCAAATTAAACAGGCTAACCCATGGATTATTTTTTTTCATTTAATTAATTAATGATGCAGCGGTGATCACGATTGTGGAATTCCTTTCACTAGTACACAAGCATGGATTAGATTTCTCAACCTTTCTGTAGTTGATGATTGGCGACCATGGTATGTTGCTGGACAAGTTGCCGGGTAAGAAGTAAATATTTCCGTTGACAGTCAATTTCAAGAGTGATTATAATTTCGGGGGATATATTGCACTTTCTAGTGTGAGCTACTGCACTTTGTAGCACGAGATATGTTTAGTGTAAATATTGGTATATTTCAGTGCCTTCGTAAAAATGATGTAAAGGAATCCCAAATTAACTTCAAAAATTACGGTACCCCCATTACCATTCCAAGCAAGAGTATCATGCATTAATTTTTTTTTTTAGAATTATACAGTACAACTCAGACACTCACAACGCACGCAAACCCTACCCCTATAAGTATCTTCGAAGACTGGGCCAGTAAAATTGGAGAAATTGACGAAGTCACCATAGGCGTTTCGCTATCGCTGGGTACGTCGCCTCCCACTGGGAGCGAACCCAGGACCTCAGGTGCTACTGAGGTTCTTGTAACCACTAGGCTACAGACCCTTTTGCATATCATGCATTAATTTTTAATACAATAGAACACAATGTCAAATATTATACGCTTTTGGTTAGCCGTTAAGCAAATACCGTTGTTTCTACAGTTAACCTACCATGAGGTGCAAATATATTAGCACAAGAAATAATTGTACTCCATCACATTATAAATTTGAACAAACTTGATGAAGAATTTGACTCCCAAAATGACTTACAAAGGGAGTAGTATCTTTCACTGGCTTTTTAACAATAGTAAAAATTAATAAATGTGAAGATTATCATACTTATAACTAATAAATTCTGACATATCATGAAGGCCAGTTGGGGAAGTGGCTGATGAGTGGAATATGTATTTACAGTTATTTTTTAATACAATAGAATTTATTCTGTTCATTATTTCCATGAAGCTATACAACCAGTATTATAGAGTTCAAATATGATGAATAATTGCGAATTAGAAAATTATGGTTTGACTAAAAACAAGAAAACTACTAACAATATTACCTCAAAAGACGAAGTTGTTCTCCCAATGGCTTACACGTTGTACATGGTCCTTATCTTCCTCAAACCATAAAAGCATGATCTTTGAATTAGCGTCGAATATTTTGCTCCCAACATTGCTGGCAATATATATATGCTTTTCCTATATGTGGCGCTGGTTCATATTGCTATTTCTTATTTTATGCAACATAAATATTCCAATTCACTACATCCGAGCTGCTTGGGACATCTGCCGCGATATGCATTGCGACCATTACCTATATCTTAGCCTAATATGGTTACTTTGTTTTATAGATTCACAAGAAGCCATGCGAATAATAACCTGACATATGCAACCGTGAAGGTGTGTTTTTATACATGCAAGTTATTTTTTTTTTACGTTTTTGTGATATTGTACTTATTATATTGAGCTTTTACAAAAAAAATTGACAAGTTGCTTTCTCAAGATTATCTCCATGTCCAGAATATTTACACTTGTGGCTGGTGGTAATAAGAGATATTTATAACCTTCACTTAAGTGTACATCAATACTTCAGGGTGCTGGGCACACTGCTCCGGAGTATAAACCTAAGGAGTGTCTCGAGATGTTTGCAAGATGGATTTCCGGCAATACTCTCTGA
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| CDS seq | ATGGGGTATGTTGCTGGCAATCCAGTGACCGATAGCCAATTTGATGAAGATGGTAAAATTCCATGTCTCCATGGCATGGGACTTATATCCAATGAACTTTATGAGGACATCAACATGCTACATGTTCTTGAGCCATTATGTGAAGAAGTCTGGAGCCCCAGGATCCATAACACATCAGCGACAGATGGAATGAGTAGGCTCATGCTGGAGTCTGCTCGTGCTGCTGATGATGACATTATTGAATTCAATTTTCCTTGGATAGCACTTGACCTAAGAAAGTCTAATTTGGCTTATTTACTGCAGAAAGCTTCCTATGTGGTTTTAAAAATATGGGCAAATGATAAAACTGTAAGGGAGAGTCTTGGTGTGCACAAGGGAACAGTTGGAAAGTGGACAAGATGCAATTACGATATAGATTACATTAAAGATGTGTATAGTACAGTGGAGTATCATTTGACGCTAATGAGAGAAGGATACCGATCATTGATATACAGCGGTGATCACGATTGTGGAATTCCTTTCACTAGTACACAAGCATGGATTAGATTTCTCAACCTTTCTGTAGTTGATGATTGGCGACCATGGTATGTTGCTGGACAAGTTGCCGGATTCACAAGAAGCCATGCGAATAATAACCTGACATATGCAACCGTGAAGGGTGCTGGGCACACTGCTCCGGAGTATAAACCTAAGGAGTGTCTCGAGATGTTTGCAAGATGGATTTCCGGCAATACTCTCTGA
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| Protein seq | MGYVAGNPVTDSQFDEDGKIPCLHGMGLISNELYEDINMLHVLEPLCEEVWSPRIHNTSATDGMSRLMLESARAADDDIIEFNFPWIALDLRKSNLAYLLQKASYVVLKIWANDKTVRESLGVHKGTVGKWTRCNYDIDYIKDVYSTVEYHLTLMREGYRSLIYSGDHDCGIPFTSTQAWIRFLNLSVVDDWRPWYVAGQVAGFTRSHANNNLTYATVKGAGHTAPEYKPKECLEMFARWISGNTL |
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| Function | Serine carboxypeptidase-like 13 [UniProtKB/Swiss-Prot:Q8H780] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0012970 | OsARC_11g0012970.01 | Chr11 | 15139058 | 15143578 | + | NAM | ||
| CDS seq | ATGGGGTATGTTGCTGGCAATCCAGTGACCGATAGCCAATTTGATGAAGATGGTAAAATTCCATGTCTCCATGGCATGGGACTTATATCCAATGAACTTTATGAGGACATCAACATGCTACATGTTCTTGAGCCATTATGTGAAGAAGTCTGGAGCCCCAGGATCCATAACACATCAGCGACAGATGGAATGAGTAGGCTCATGCTGGAGTCTGCTCGTGCTGCTGATGATGACATTATTGAATTCAATTTTCCTTGGATAGCACTTGACCTAAGAAAGTCTAATTTGGCTTATTTACTGCAGAAAGCTTCCTATGTGGTTTTAAAAATATGGGCAAATGATAAAACTGTAAGGGAGAGTCTTGGTGTGCACAAGGGAACAGTTGGAAAGTGGACAAGATGCAATTACGATATAGATTACATTAAAGATGTGTATAGTACAGTGGAGTATCATTTGACGCTAATGAGAGAAGGATACCGATCATTGATATACAGCGGTGATCACGATTGTGGAATTCCTTTCACTAGTACACAAGCATGGATTAGATTTCTCAACCTTTCTGTAGTTGATGATTGGCGACCATGGTATGTTGCTGGACAAGTTGCCGGATTCACAAGAAGCCATGCGAATAATAACCTGACATATGCAACCGTGAAGGGTGCTGGGCACACTGCTCCGGAGTATAAACCTAAGGAGTGTCTCGAGATGTTTGCAAGATGGATTTCCGGCAATACTCTCTGA
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| Protein seq | MGYVAGNPVTDSQFDEDGKIPCLHGMGLISNELYEDINMLHVLEPLCEEVWSPRIHNTSATDGMSRLMLESARAADDDIIEFNFPWIALDLRKSNLAYLLQKASYVVLKIWANDKTVRESLGVHKGTVGKWTRCNYDIDYIKDVYSTVEYHLTLMREGYRSLIYSGDHDCGIPFTSTQAWIRFLNLSVVDDWRPWYVAGQVAGFTRSHANNNLTYATVKGAGHTAPEYKPKECLEMFARWISGNTL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0461000 | SBH | 1.093553 | 0.968793 | 4.674829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g27170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0461000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013290 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013290 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0241400 | RBH | 0.194896 | 0.4106285 | 0.036605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013270 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0257200 | RBH | 0.142 | 0.384348 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012880 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013240 | RBH | 0.0 | 1.577551 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013080 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013230 | RBH | 0.0 | 0.0 | 0.000000 |
