Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsARC_11g0007780 | OGI:11012050 | 8/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:6505806-6506667 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TTAGAGGGAGATACTATTTGGTTGGTGACAAGCAACGGAGGAAATATCATATGGTGAGGTGGATAGACCTAGCTTTCCCCAAAGAGTTTGGAGGCATTGGCCTCACTAAAACTAGGATGTTAAATAATGCTTTGCTAGATAAGTGGTTAATTAAGCTTGTGTATTGAATTGCTGAGAAAGAAATACTTGTAGTCAGGAGGGGTGTTCCAATGTGGTGCAGTGGGAGTTTCAAAATTCTGAAGAGGGATTCTAAGGCTCTGTTCTATTCTTCAACTCTAAACTTTAACTTCCTCATTTTCCGTTAGCACGCTTTTCAAATTATTAAATGGTGTGTTCTTCAAAACAAAACATTCTATATGGAAGTTGTTTCTAAAAAGCAAATAAATCCATTTTTCAAATTTATAATAGTTAATATTTAATTAATCATGTGCTAATGAGATTTTCCGTTTTACGTGCAACAAAATTTTCTCTCCGGTTTTGGAGATTGAACGGGGCCTAAATGTCAAAAAATGTATGAAACTTGGCTCAAAATGGCAAGTGGTAGATGGATCACATATATGGTTTTGGCATGATATCTGGTATGAATCTTGCCCTCTCAAAATAACCTTCCATGAGATATATGAGGTTTGCAATCAGCAAGATATCCTACTATCTCAGTTGAAACAAATTAAGAGATGTTGGAGGTTTAACCTTCAGAAGATCTTTTGTAATGATTGAGATGGAACAATGGGAGGAGATCAGAGCAATTGTAGAGAAGTTAGAGCTGGGTACAACCCCTGATATTCTATGCTGGGGTTTGTCTGCTGACAAGAAATATACCGCAAACTCTATGTTCAGAGCTATATCCTATAGGGGGTATTAA
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CDS seq | ATGGTGAGGTGGATAGACCTAGCTTTCCCCAAAGAGTTTGGAGGCATTGGCCTCACTAAAACTAGGATAAGATCTTTTGTAATGATTGAGATGGAACAATGGGAGGAGATCAGAGCAATTGTAGAGAAGTTAGAGCTGGGTACAACCCCTGATATTCTATGCTGGGGTTTGTCTGCTGACAAGAAATATACCGCAAACTCTATGTTCAGAGCTATATCCTATAGGGGGTATTAA |
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Protein seq | MVRWIDLAFPKEFGGIGLTKTRIRSFVMIEMEQWEEIRAIVEKLELGTTPDILCWGLSADKKYTANSMFRAISYRGY |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsARC_11g0007780 | OsARC_11g0007780.01 | Chr11 | 6505806 | 6506667 | + | NAM | ||
CDS seq | ATGGTGAGGTGGATAGACCTAGCTTTCCCCAAAGAGTTTGGAGGCATTGGCCTCACTAAAACTAGGATAAGATCTTTTGTAATGATTGAGATGGAACAATGGGAGGAGATCAGAGCAATTGTAGAGAAGTTAGAGCTGGGTACAACCCCTGATATTCTATGCTGGGGTTTGTCTGCTGACAAGAAATATACCGCAAACTCTATGTTCAGAGCTATATCCTATAGGGGGTATTAA
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Protein seq | MVRWIDLAFPKEFGGIGLTKTRIRSFVMIEMEQWEEIRAIVEKLELGTTPDILCWGLSADKKYTANSMFRAISYRGY |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.161869 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015360 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015320 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015370 | SBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007800 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007950 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014960 | SBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |