Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0005330 | OGI:11013030 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:4196095-4197690 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCCAACAAAGCCAACCGACACATGCTAAATCAAAATCAAATCCTCGGGTACACAAACTTGGCACGAAGCAATCGCTCGAACTCCTCCACATTTGCAGCCTCCATACACATGAGCACCCGCACGGCGGCGGCGTCCCCGCCGTCACCATCCGCTGCCCCGCCGTCCATCACGTAGAAGAACCCTCCGCGCAATGACTCCGCACGGGACATCGCCCATGGCTTCCCCCACCCGAAGTCCACCGCGTCGTACAGCGGAATGCCCAGCCAGCTCACCACCCGCAGCTCCGTCTCCGGCAGGCTGCCATTGTCCGGACGATCGGGCATCCCCGCCATCTCGTTGTAGTCGATCGCCGACCGCAGCATCTCGTCGTCGTTTAGGCGGCCAATCACGCCCTCGTGGAGGAGGCGTCAGGGTGGATGGCGAGCCGGGGGCGCGCGCGGAGGAGGGCGCGGTCGTGGCAGGGCAGCTCCACCACGGCGGCGTCGCCGTCCCGGCAGAAAGCAGCCCATGTTTGCAAGAAGTGGAACATGCTATGGCCGTCGACGGCGGCATGGTGCACCGCCGTCCCTAACACTATACCGCCCCATCTCAAGAAGGTCACCTGCAAGAAAAATAAATGCTGAAACCTACGTATTCTAACTTCGATCCAAGCAAATCAAATTGAATACTACTTCATTCGTTTCACAAATATAAGTCATTCTAACATTTTTCATATTTATATTGATGTTAATGAATTTATATAGATATATATGTCTAGATTTATTAATATTAATATGAATATAGAAAATGCTAGAATCAAATATGTAAGTCATTCTAACATTTACCATGTTCATATTGATGTTAATGAATCTATATAAATATATATGTCTAGATTTATTAACATCAATATAAATATAGAAAATGTTAGAATATCATACACTGTGAAACGGAGGTAGTACCTTCGTTTTTAATAGATAACACTGTTGACGTTTAGATCATTTATTAAAAAAATATAATAATTATTTATTTTATTGTGAGTTATTTTATTACTAAAGGTATTTTAAGGATGATTTATATCTAATCCGTTTACATAAAATTTTTAAATAAAACAAACAATTAGATCCAAAAGTTAACGGCGTCATCAAGTAGGAACGAACTAGCGAAACGAAACACTGACCTGTACGGCGAGCACGGCAGACGGCGGCTCAGTACGGGGGATGAACAGCCTCTTCAACTCCGGCGACGGCTTGAGATCAGTCAAGACGTCATCGACGGCGAGCTCCGACCGAGCCACCGCAAAGAAGACGCCATCGGCGTTGCAGTCAATCTCGGGCCGACCGTCGCCGCCGACGCGGAAGCGGCCGGCGAGGGGGTAGAAGACCACCAGCGCCTTGGCCAGAGCCTCCTTGAGCCTGCCCACGTCGAAGAAGCCGCCGCCGCCGCCGGCGGCATCATGGCGGCGGCGGTAGAAGTGCACGAGCGGGGTGAGGGCTCCTCTGTTGGCCAAGACGATGTCGAGGGGAGAAAGCCAGAGGACATGCCTCGGCGTCTTCTCGCTGGGCACTACGAAGCAACACTCCATCCCTTGCGTCCCATGGCCGGCCATAGGTGAACT
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| CDS seq | ATGGAGTGTTGCTTCGTAGTGCCCAGCGAGAAGACGCCGAGGCATGTCCTCTGGCTTTCTCCCCTCGACATCGTCTTGGCCAACAGAGGAGCCCTCACCCCGCTCGTGCACTTCTACCGCCGCCGCCATGATGCCGCCGGCGGCGGCGGCGGCTTCTTCGACGTGGGCAGGCTCAAGGAGGCTCTGGCCAAGGCGCTGGTGGTCTTCTACCCCCTCGCCGGCCGCTTCCGCGTCGGCGGCGACGGTCGGCCCGAGATTGACTGCAACGCCGATGGCGTCTTCTTTGCGGTGGCTCGGTCGGAGCTCGCCGTCGATGACGGCGTGATTGGCCGCCTAAACGACGACGAGATGCTGCGGTCGGCGATCGACTACAACGAGATGGCGGGGATGCCCGATCGTCCGGACAATGGCAGCCTGCCGGAGACGGAGCTGCGGGTGGTGAGCTGGCTGGGCATTCCGCTGTACGACGCGGTGGACTTCGGGTGGGGGAAGCCATGGGCGATGTCCCGTGCGGAGTCATTGCGCGGAGGGTTCTTCTACGTGATGGACGGCGGGGCAGCGGATGGTGACGGCGGGGACGCCGCCGCCGTGCGGGTGCTCATGTGTATGGAGGCTGCAAATGTGGAGGAGTTCGAGCGATTGCTTCGTGCCAAGTTTGTGTACCCGAGGATTTGA
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| Protein seq | MECCFVVPSEKTPRHVLWLSPLDIVLANRGALTPLVHFYRRRHDAAGGGGGFFDVGRLKEALAKALVVFYPLAGRFRVGGDGRPEIDCNADGVFFAVARSELAVDDGVIGRLNDDEMLRSAIDYNEMAGMPDRPDNGSLPETELRVVSWLGIPLYDAVDFGWGKPWAMSRAESLRGGFFYVMDGGAADGDGGDAAAVRVLMCMEAANVEEFERLLRAKFVYPRI |
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| Function | Hydroxycinnamoyltransferase 2 [UniProtKB/Swiss-Prot:Q6K638] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0005330 | OsARC_11g0005330.01 | Chr11 | 4196132 | 4197657 | - | NAM | ||
| CDS seq | ATGGAGTGTTGCTTCGTAGTGCCCAGCGAGAAGACGCCGAGGCATGTCCTCTGGCTTTCTCCCCTCGACATCGTCTTGGCCAACAGAGGAGCCCTCACCCCGCTCGTGCACTTCTACCGCCGCCGCCATGATGCCGCCGGCGGCGGCGGCGGCTTCTTCGACGTGGGCAGGCTCAAGGAGGCTCTGGCCAAGGCGCTGGTGGTCTTCTACCCCCTCGCCGGCCGCTTCCGCGTCGGCGGCGACGGTCGGCCCGAGATTGACTGCAACGCCGATGGCGTCTTCTTTGCGGTGGCTCGGTCGGAGCTCGCCGTCGATGACGGCGTGATTGGCCGCCTAAACGACGACGAGATGCTGCGGTCGGCGATCGACTACAACGAGATGGCGGGGATGCCCGATCGTCCGGACAATGGCAGCCTGCCGGAGACGGAGCTGCGGGTGGTGAGCTGGCTGGGCATTCCGCTGTACGACGCGGTGGACTTCGGGTGGGGGAAGCCATGGGCGATGTCCCGTGCGGAGTCATTGCGCGGAGGGTTCTTCTACGTGATGGACGGCGGGGCAGCGGATGGTGACGGCGGGGACGCCGCCGCCGTGCGGGTGCTCATGTGTATGGAGGCTGCAAATGTGGAGGAGTTCGAGCGATTGCTTCGTGCCAAGTTTGTGTACCCGAGGATTTGA
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| Protein seq | MECCFVVPSEKTPRHVLWLSPLDIVLANRGALTPLVHFYRRRHDAAGGGGGFFDVGRLKEALAKALVVFYPLAGRFRVGGDGRPEIDCNADGVFFAVARSELAVDDGVIGRLNDDEMLRSAIDYNEMAGMPDRPDNGSLPETELRVVSWLGIPLYDAVDFGWGKPWAMSRAESLRGGFFYVMDGGAADGDGGDAAAVRVLMCMEAANVEEFERLLRAKFVYPRI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0005330 | OsARC_11g0005330.02 | Chr11 | 4196095 | 4197690 | - | IsoSeq | ||
| CDS seq | ATGCCGCCGTCGACGGCCATAGCATGTTCCACTTCTTGCAAACATGGGCTGCTTTCTGCCGGGACGGCGACGCCGCCGTGGTGGAGCTGCCCTGCCACGACCGCGCCCTCCTCCGCGCGCGCCCCCGGCTCGCCATCCACCCTGACGCCTCCTCCACGAGGGCGTGATTGGCCGCCTAAACGACGACGAGATGCTGCGGTCGGCGATCGACTACAACGAGATGGCGGGGATGCCCGATCGTCCGGACAATGGCAGCCTGCCGGAGACGGAGCTGCGGGTGGTGAGCTGGCTGGGCATTCCGCTGTACGACGCGGTGGACTTCGGGTGGGGGAAGCCATGGGCGATGTCCCGTGCGGAGTCATTGCGCGGAGGGTTCTTCTACGTGATGGACGGCGGGGCAGCGGA
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| Protein seq | MPPSTAIACSTSCKHGLLSAGTATPPWWSCPATTAPSSARAPGSPSTLTPPPRGRDWPPKRRRDAAVGDRLQRDGGDARSSGQWQPAGDGAAGGELAGHSAVRRGGLRVGEAMGDVPCGVIARRVLLRDGRRGSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.533832 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0182200 | RBH | 0.404374 | 0.503774 | 5.336411 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07960 | RBH | 0.272545 | 0.337697 | 1.333796 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0182200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005450 | RBH | 1.813094 | 7.725616 | 1.221064 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005420 | RBH | 0.946649 | 2.364234 | 4.116028 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005460 | RBH | 1.356474 | 4.562335 | 6.280126 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005250 | RBH | 0.000000 | 43.115005 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0069400 | RBH | 2.2901945 | 18.646658 | 32.774621 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005320 | RBH | 0.0 | 1.145370 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0069200 | RBH | 6.1780665 | 77.4532435 | 3.4624045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005290 | RBH | 0.0 | 0.905069 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005370 | RBH | 0.0 | 39.307236 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005350 | RBH | 0.0 | 2.516637 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005410 | RBH | 0.0 | 5.169802 | 0.952826 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005280 | RBH | 2.588854 | 2.854194 | 11.642264 |
