Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_11g0002620 | OGI:11006330 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr11:1869300-1873674 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTGATTTCGTGGTTCATTCCACGAAACTAAATTAAGCACCGCAATTGCATTCCGAAGCTAGCATCTATGCATTGCCAGTTTGTCACAACAAAAGTGTGCGCATTTGACTGGAACAATTTAATGGTCTTCGGTACTGGAAATATTTTGTCAATGATCTTTGCTGAACATTTCTTCCAAAGTTTTCAGCCAGTTCATATATTGCCACCGCTCCTTCTCAACCAAATGGTGGTGAAGTAAGCTTGCCAGTTTGGAGTTAACGCCTCTTGCCACCATATACCCTTTCAATGCAACCTGTAACTGCGGATCCAAATTTCTGCAAAAAGAAAAAGGGAAGCATAGTCATTGATTGCAAATAGGTAGAAGGAAATCACGCTTGCAATGATCCTAATTAAAACAACAGGAATACAGACCCCTCTACCCTCTTATATCCCCGAAAAAGGAATCAAAGGCTCTTTGATTGTTTAAGGGAACAGAAATAGGCCCCTTCAGAGTAGCAACGATACAGTCAACTTTCATAAGTAAAAAGAAATATGTAAACATTATAGCTCAGCAAACACAAAATGCTCACCATTCAACCAGATAGCAAGGGATACATGTAATGCTTAAGAGCATGGCCAACAGCCACCCAAATCAATCCCCTAAATTATTATTTTGAGATCTCTAAAAAGGATATAAGGCATGAGTATATCTTTATCTCCAAGAGATACCCAAAATTCAACTCTCCAAACAAATAAAGTGGGCCAGCTAGAAAACTACCAACAACAAAATTGTAGTTCCTCTCTTCCCCCCTCACATGCGTTGTGCACTGTGCCCTCCTCCATGGCACGTGACGTACTCCCTCCGAGCGTGGCATCCCGTCATCCGTTTCACCATTTTTTCTTCAGGACGTTCAATCTCCTTGACATCATAACTTACAGTTGAAGCATTGAACAATGCTTTCATTGGCTTCAGCTGCCATATGAGTATTTGGCCCAAAATCATATTTCACTTGATTATTAGCACGGCGACATCTCTGGGAATCCACGTTTCACTTGATGATTAGCAAGATCTCCTGTATTTTACATGGAAAAAAAATATTGGTTCTGCAATAATCAACAGTGGAGTGTTAACCCAGTCAAAAACTCCAGCCTTTTTATGTCAATGGTGTTAACAACATGGAGTTGATCATGGCCTAAATGTGGAGTAGACAAAACATATATGAAACCAAGAGCTAAACTGCGAACTGGGAATCTTCTCACACTGAACTGCTTCATATGAATTTCAGCAGCAAAAAAAAGAGGAGTTTTGCAAGCGGCAAGATATTTCAGCAGCTGCAACAGTAATTTTCAGCACCAGCAAGCAGCAGTTTTCAGCAGGAAAAAACAGAAATTTTCAGCACCAAAAAGCAGAATTTTTCAGCTATAACAAGCAACAATTTTCATAAGCCAGCAACAGCATATTTCAGCACCAACACCAAGCAGTTCCCAACAACAGCAAAGCAGAAGATTTGAGCAGAGCAGCAACAATCTGTTTTCAGCAATAGTAAGAAACATTTCAGCAAGCCAACGAACAGCCATGTTCCATCACTGAATTGAAACAAAAAATCACTCACCAATAGCAGTTAATCATCCAATGTTGAAAATACATACATGGGTCCATTTGTGGTCAAATATTGTGGAGATAACAACTATGTTATTAATGGACATGAATAAATCTTTGAATGCCACTAAACCAACCTAGAGCAAGTTTAAGCAATACTGCAACTGTGCAAGAGCAAAGTTTCGACGGACGAAATCCGCTTTATCACCCAAAGAGCAATTTGTACAGAAATCGACTCCAGGCGAGTCGTGCTCGATGAAGTCCAGTGACTGGGCATCTCCGGCGGAAGCTGGCTGGTCGCATCAGGCCTTTGTTGCCTGCATGTTACCAGATGGCTTGGGTGGCCGGGACAGGGTGGCACCAATCCGACATAGGGGAAGGCGGCTGCGAGACGCGACAGGGCAGAAGGCCGATTGGAGGCGAATCGGGTGGCTGGCTGAATCGAAGCGGTGGTGGTGCTTGGGGAGCGCACCTGGCTAGGTGGAGATGGGACTGGTGCTGCCAGAACACGTGCCGCTTCTGGAAAAAATGCCGACGCGGGGTAGCTTGGGGGAGCGATGGCTGCTTTCCCAACAGCTGCAGGGAAGATAAGGCTGGCGGAACGGATCTACTCGCCGGCAGACGAGGGCGCAAAGAAGAGCCTAGCGGGATTATTTTCACCCAACATGCGCGAAGAGACTGCGATAGAAGGATTGGACGCCGCGCCTCTCCCCTACAAGTTGAGAGCGATATACGCGGGATTAGAAATGCTAAATTTTTAGGGGTGGTTTACGTCTACTGTTGGAGAGATTTTTCATGCAAAACCCCTTAATTTGGTAATGGGAGTAGTATAAGGGAGCTGTTGGTCATGCTCTAAGGTTACTTTAACTACCAACAATCCTCACTGCCTAGAAAAATAGACTGCTGAGTCCCTAACCAATCACATTATGACGTTATCTATTTGAGATGACAGGCTCTGAGGTCATTTTGCTAACAACAGAAACACCTGTAGTGATGAGCCTTAGAGCATAGCCTAGTCCCAGGTTAACACATGACGCTATAAATCTGTACTAGCTCGCTTCAATCCAGTCAACACAATAAAATAAAAAAAAAACCCAAGTAGAGATAAGAAATTGTTGAAATAGAATAAAGTGGAACATTCGTTCTCATCTATTTTAGTGTATCTATTTTAATCCAAAACCAAGTATCAATTTTCATACTTTTATAACTGTCTGCTGTTTAGTTGGTTGTTACTACAGTTGTACCTCCAAAAAGATCAGCAATACCCTTATGACATAAAGCATTTTCAACCAACAAGTTTCTCTATAAACAAATGGAAATGAATAAGTGAAGTTTCCAACTTTTAGCATGAGCATACTCATAGTATGGCCAAGCAATCGATATGTTTTAACCAATTCATCTGCAGCCAGCCACATTCACGTTGTCACGTTGAACAGATATGGACATGCCATTGCAAGCCAACATAAAAAAAAAAAAACTCTAACAGAATACACCATCTAAATTTTGTTGCAAGCGCAAGCAGCAGTTTTATGAGTAGTGGAGAACAGGAATTCGTGAGACCTCGCCACCAAATTTACCAAAGTTCCTTTCAAAATCCCTCCATCAAGAGTGGGATGTAAGAGAATTCTGCATTGATGAACTTTTAACAAAAGGGTAGGTAACTAGATATTCTAGCAAATGAAGACCATGCGGCTTAGCATGGATTGAAGAACAAGGGCAGATACTTGGTTCACTGTCAAAACATTACAAGATAAATAACTATTCAACCCTACAGTCCAGTCTGTCCAGATAGTAATTAGTGGTGCAATCCTTTAGATTTTGGTCAGCGGTCATACTGTCCCCATTATAAATTTTCTAGACAAGTCGATGGGGGTTGACAACTAATAGTTAATTTCCATAAACATAATAAAACAAACCAGGATACTCTGACACTCTGTTAGTCTGTTGTACGACAATTTCGTTAACAATCAGCACACTACTACCACAAGAAAAATACAGGTGTTCCTTTTATTTCGTAGGAAGAGAAGATAGTGGTAATGAATTTCATATGAGGGCGTAGGCTCTCGGCTCTCAGCACACTAATTTTTTTGTAACGATCACTAGAATTACAGAACTCCACTAAACTACTAAAGTGTCATGAAAGTGCTTGTTGTTTCCAGATTTCTTGCAGGAACTCCCAGCTTATGAGCCCACTGCACGCATGGCAATATCCACACAAGTTAACCACACAAATGAAGAAGTAATCACCTGAACTCCGGCCCTTCATACTTGTCTTCCCCAGCGTCGCACTCGCCAGCAAACGGGTGGTAACAAACAGCAGTAACATCATAGTCAGCAGAGCCGCCATCACCTTCAGCTGCAAACGCGCGGCAATCGAACCGCATCACCGGCTTCACATCAGGCTTACTGACGAACACCTTCATGAGCGCGTCCCTGGGCAGGGGCTCCTCCCCTTCGAACCGCAGCGGCGCGAGCACCGCCGACACGAGGACCTCCTCGGAAGCATCCCGGCGGCGCAGGAGCACCTCCTGCCCGCGCGGCGCGTCCGACACGGTGGAGAAATCAGGAATGTCCTGCGAGAACGAGGGGGGAGTGAGTGGCGCTGGATTTGGGGGCGAGGCAGCATGCGGTGGTGGGTACCTGGGATTGGAGCGACGGAGGAGAGGAGGAGGGGGAGGAGGAGAGCTCATGAGCGATCTCGGCGCGGACGGCGGCCAGCACGCCGCCGTCGTTGGCGCCGCCGCGGCGGAGGGCGGACGCGGCCAGGCGGCGCAGCGACATCACGCAGGAATCGGT
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| CDS seq | ATGTCGCTGCGCCGCCTGGCCGCGTCCGCCCTCCGCCGCGGCGGCGCCAACGACGGCGGCGTGCTGGCCGCCGTCCGCGCCGAGATCGCTCATGAGCTCTCCTCCTCCCCCTCCTCCTCTCCTCCGTCGCTCCAATCCCAGGACATTCCTGATTTCTCCACCGTGTCGGACGCGCCGCGCGGGCAGGAGGTGCTCCTGCGCCGCCGGGATGCTTCCGAGGAGGTCCTCGTGTCGGCGGTGCTCGCGCCGCTGCGGTTCGAAGGGGAGGAGCCCCTGCCCAGGGACGCGCTCATGAAGGTGTTCGTCAGTAAGCCTGATGTGAAGCCGGTGATGCGGTTCGATTGCCGCGCGTTTGCAGCTGAAGGTGATGGCGGCTCTGCTGACTATGATGTTACTGCTGTTTGTTACCACCCGTTTGCTGGCGAGTGCGACGCTGGGGAAGACAAGTATGAAGGGCCGGAGTTCAGAAATTTGGATCCGCAGTTACAGGTTGCATTGAAAGGGTATATGGTGGCAAGAGGCGTTAACTCCAAACTGGCAAGCTTACTTCACCACCATTTGGTTGAGAAGGAGCGGTGGCAATATATGAACTGGCTGAAAACTTTGGAAGAAATGTTCAGCAAAGATCATTGA
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| Protein seq | MSLRRLAASALRRGGANDGGVLAAVRAEIAHELSSSPSSSPPSLQSQDIPDFSTVSDAPRGQEVLLRRRDASEEVLVSAVLAPLRFEGEEPLPRDALMKVFVSKPDVKPVMRFDCRAFAAEGDGGSADYDVTAVCYHPFAGECDAGEDKYEGPEFRNLDPQLQVALKGYMVARGVNSKLASLLHHHLVEKERWQYMNWLKTLEEMFSKDH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0002620 | OsARC_11g0002620.01 | Chr11 | 1869300 | 1873674 | - | NAM | ||
| CDS seq | ATGTCGCTGCGCCGCCTGGCCGCGTCCGCCCTCCGCCGCGGCGGCGCCAACGACGGCGGCGTGCTGGCCGCCGTCCGCGCCGAGATCGCTCATGAGCTCTCCTCCTCCCCCTCCTCCTCTCCTCCGTCGCTCCAATCCCAGGACATTCCTGATTTCTCCACCGTGTCGGACGCGCCGCGCGGGCAGGAGGTGCTCCTGCGCCGCCGGGATGCTTCCGAGGAGGTCCTCGTGTCGGCGGTGCTCGCGCCGCTGCGGTTCGAAGGGGAGGAGCCCCTGCCCAGGGACGCGCTCATGAAGGTGTTCGTCAGTAAGCCTGATGTGAAGCCGGTGATGCGGTTCGATTGCCGCGCGTTTGCAGCTGAAGGTGATGGCGGCTCTGCTGACTATGATGTTACTGCTGTTTGTTACCACCCGTTTGCTGGCGAGTGCGACGCTGGGGAAGACAAGTATGAAGGGCCGGAGTTCAGAAATTTGGATCCGCAGTTACAGGTTGCATTGAAAGGGTATATGGTGGCAAGAGGCGTTAACTCCAAACTGGCAAGCTTACTTCACCACCATTTGGTTGAGAAGGAGCGGTGGCAATATATGAACTGGCTGAAAACTTTGGAAGAAATGTTCAGCAAAGATCATTGA
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| Protein seq | MSLRRLAASALRRGGANDGGVLAAVRAEIAHELSSSPSSSPPSLQSQDIPDFSTVSDAPRGQEVLLRRRDASEEVLVSAVLAPLRFEGEEPLPRDALMKVFVSKPDVKPVMRFDCRAFAAEGDGGSADYDVTAVCYHPFAGECDAGEDKYEGPEFRNLDPQLQVALKGYMVARGVNSKLASLLHHHLVEKERWQYMNWLKTLEEMFSKDH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_11g0002620 | OsARC_11g0002620.02 | Chr11 | 1869794 | 1873674 | - | NAM | ||
| CDS seq | ATGTCGCTGCGCCGCCTGGCCGCGTCCGCCCTCCGCCGCGGCGGCGCCAACGACGGCGGCGTGCTGGCCGCCGTCCGCGCCGAGATCGCTCATGAGCTCTCCTCCTCCCCCTCCTCCTCTCCTCCGTCGCTCCAATCCCAGGACATTCCTGATTTCTCCACCGTGTCGGACGCGCCGCGCGGGCAGGAGGTGCTCCTGCGCCGCCGGGATGCTTCCGAGGAGGTCCTCGTGTCGGCGGTGCTCGCGCCGCTGCGGTTCGAAGGGGAGGAGCCCCTGCCCAGGGACGCGCTCATGAAGGTGTTCGTCAGTAAGCCTGATGTGAAGCCGGTGATGCGGTTCGATTGCCGCGCGTTTGCAGCTGAAGGTGATGGCGGCTCTGCTGACTATGATGTTACTGCTGTTTGTTACCACCCGTTTGCTGGCGAGTGCGACGCTGGGGAAGACAAGTATGAAGGGCCGGAGTTCAGGAGATCTTGCTAA
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| Protein seq | MSLRRLAASALRRGGANDGGVLAAVRAEIAHELSSSPSSSPPSLQSQDIPDFSTVSDAPRGQEVLLRRRDASEEVLVSAVLAPLRFEGEEPLPRDALMKVFVSKPDVKPVMRFDCRAFAAEGDGGSADYDVTAVCYHPFAGECDAGEDKYEGPEFRRSC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr11 | 1869300 | 1873126 | - | OsARC_11g0002620.01 | OsARC_11g0002620.02,OsARC_11g0002620.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.145126 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0140100 | RBH | 1.141637 | 0.169573 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04210 | SBH | 0.173766 | 0.174827 | 0.162203 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0140100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002640 | RBH | 0.0 | 2.808440 | 1.866502 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002700 | RBH | 0.0 | 3.610722 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002660 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002480 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002610 | RBH | 2.733739 | 0.000000 | 2.912157 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0035500 | RBH | 0.9219665 | 1.4539805 | 1.430683 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002670 | RBH | 0.121552 | 0.0 | 0.083258 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0033900 | RBH | 1.9773105 | 2.6458155 | 8.4549605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002560 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002690 | RBH | 0.475658 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002690 | RBH | 4.229606 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002600 | RBH | 0.152966 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002660 | SBH | 0.000000 | 2.578671 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002630 | RBH | 0.0 | 1.974058 | 0.385405 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002610 | RBH | 0.597045 | 0.0 | 1.663798 |
