Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_11g0001180 OGI:11002920 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr11:795439-799178
Gene Symbol WRKY46, OsWRKY46, WRKY91, OsWRKY91
DNA seq

ACTGTCAGATTTTTCCTTAATTTTATACTAGTATAATTTAACAGGTTCTGCTACATTTGCCTTTTTCTGTATCACGTACTCCTTCCTACTAGATAGAGAAACGCCAATTCAGTTCTTTACATCATTCAAGCACAAAAATCTGGCTTGAATCTACATGCAAAGAAAACAACATAATGCCACTATAGTATATGGAATCTCATCAGCACAACATCCTCACCTCCCAATATAAAACCCTATCTGGAACCATCCAAGAGGCTCCTCAGAATGTATATGCATCTCCTTCACTTTCCATAAAAATCATCACAAGAAATGGAAATACTCGATGCATCTTGACTGACCGATCGGCAGCAATGTCCTCGACAGAGCACCAGTGGTACTGGGTGAAGCACTTGCTTCTGCATAATCGTCCGCCTCCATCTTAACCGGAGCATTGCTTGTAGATGACGATGTGTCTGCCCACTGAAACTGGCGACTGTAGGTGTTCATGTCAGGTTGCTGGTTGGAACTGTACGACTGCATGCTCGGTGACAACAAGGAAGCTGATGATGACAAGAATGTGGGCTGTTCACCGGTTTGGCCATGTGAATTGAAGCAGATCGAAATGGCTTTCCTCGACTGCACAGTAGAATCAGGAGTGCTGCCTACGATCTTTGAGCTGCTGTTGCAGGTGTGGTGGTTGAAGTAAGTGACTGAGAACAATGGTGGATCATTAGTGTCCTTCTGCTGGACTTGCTTCGTAGCAGGGCACTTCATGTCATTCTTGTAGGTGCATCTGTAATAGAACCTGCAAATAGAAGGCCATGATCTCAAATTCTCAATACCTTCTTGCTGGAAATTACTGCAAATTACTGCAGATAAGGGATTGGTTTTTTTTCCAGGTAGCATTTAGGGAGTACAAATGCAGAAATTTTGATTCTGTGTGCTGCTGTTATACACCGTTTTAGCTGATCTTTATTTAGAATGATGGTGACTGCACTGAAACTAACTACTGTCCGTTCCAGCATACAGTGGAATTTCCCTTTTTTTTTCTCTTTTGGGATCACCTTCTGATCTGCCGCTTGGCAATGTGTTATTACCATACTTTTCAGAATGCCATCAGAAAACTTAGTTGATCTGTTTACTTACAAAAATTACGTGGTATATTTGTCACTAATTTATTTTGGAACTTCATTTACTTGGTGACACCAAAGCCAGCACTATCCTGCATATTCCTACTATATTCCAAGTTGAAAGGTTGAACAACACATTCTTCAACTCATCTTCACGCAATCTCACCTTTAGGGTACCAACTTGAGTTATTCTTCTTTACCAGTTCTTGAACCGTGGTACTTTACAGTTTGCATATATATGTGCAGTGTCATTCAGTGTAACAAACCTTAATTTAAGACAACAGGAAAAACATTTGTATTCTTAAATCATGTCTCTTTTGCACTTTTCTCCACGAACATTTACTCTACCTAAATTAGGCGGAGCGGTTGCCAACACATACTTTTCAGACCTTTCATAAATTACCTTTTGCAAAAAGAACTGACTGCAACTATTAGCAAGCTCTTGTGAGCAAACAAGATATGTAGGGTCTTCCCTCAGGCTGCATGCCAATCAAACTCCAAGGAAGTAAAAAAGAGTTTGTGGAGACTGTCGGCATGCACGGTAATATTTGCAAACAAAATGTGCTTGAAAAACACAAGTAGTATATATTCTGTTAGGAAAACATTAGATATCAAACAAGTCGCTGATGACAGGCAATAAAAGAGAACCACTTGCATATTTTTTATTTATATGGTCTCACTTTTCAAATTTTTATATGTCTTGTTGAGTTGTCGATTACCAAAGAGATTGCTGCTATGAAGGTTCTTTTCCCATGGTCAATTTACTATCGTTTTTAATCTTGCTCACTAAAGGCATCTGCCGACAGGCCCGACAAGTGCCCCTCGCAATTCTACCAAGAGATGACTAGAAGACAACCATGTAGCCTAATTTGTGTCCACAGAACACAAGAGTGTTCTTTGCAAGAACCCAAATTAAAGCATTGACCAAACCATCTGCTGATATACAAACACTGGACACAGTATTAGCCATCGACATGACTTGGGTTATAGTAAACCACCAGCTGATCAAACAAAGACTAGAGATTGGCCCCAAAAATGAGACTTTTGCTATATCCATAAATATTTAAGGAAATGTGAACATGTGAGTTCATTTACATGAACAGATGTAGTCTTTGCTAGATTTCTTTTCCGGTTTCAACTGAAATTAGCTCAAGATGTAAACACTAAGCACACATCTAGAGCCTGTTAACAGATTTGTTGGACCACCCTAACCCACTTTGGTTATGGAAGAAATTGGTGAGTAGGAGCTATTCTACCAAACTACCGAAAAGGTGCCCTTCGCAATTCTACCAAGAGATGACTAGCGGACAACCATGCAGCCTAATTTGTGTCCACAGAACACAAGAATGTTCTTTTCAAGAACCTAAATTAATGCATTGACCAAACCATCTGCTGATATACAATGGACACAATATTAGGCATCGACATGATTTGGGTTATAGTAAACCACCAGCTGCACAAACAAAGACTATAGTTTGGCCCCATAAATAAGACTCCTGCTATACCCATAAATATTTAAGAAATGTGAACATGAGAGCGCAATTACCGAGTTACATGAACAGAACTAGTCCCTGCTAGATTTGTTCTCCGGTTTCAACTGAAATTCGCTCTCAAGATGTAAACACTAACTAAGCACACATATGGAGCCTGTTAACAGCTCTGTTTGGACCACACTAACACACTTCCATTCTGGAAGGTATTGGTGAGTAGGAGCTGTTCTACCAGAACTACCGAATAGGCGAAAACTAAAGAAACCGGGGATTTGCAATTATGACACTGCAAATATTAACCTTTGCTATAATGACACTGGACTCACATTTCATACACACAGATGGGCCCATTTGTCATTCACTCGGAGTGTCAAAACAGCGAAGCCCCCATGTTTGCAGTCCCAATATTGCAATTTTCTCAGAAAAAAGATGGCATGAAGAAAATTTTCCTGCCAAAATTCAAAGGGGGAACTTGAAATTCCCCAAGGTTTCAGATCACCACCCATAGTTCACTCACCTAATACAAGTACTCTGCATGTACTTAAAATTAGCTTGGTGAATCTAGTAAAATCTGAAATTAACCGTTCTGCGAATTCTAACCATGGAAGACAGTAAAAATATGACCTTTGAGGGAAAGAAAAATAGATGCATGCATGAAGTCTAGTAATTTTGGGGGAAGGAAATGAAGTGCGAAAAAAGAAATGGAGGGCGGAAGGTACCTTGGGAAGTTGGAATTGGAGAGTTTCTTCTCGCCGTACTTCCTCCACTGGTGGCCGTCGTCGTACGGCGCGTAGGTGTCGGTCGTCCATGTCCGCTCCTCCTTCCTGGGGCTACCATATCAGAATCAATGGCATCGCACCCACCACAAATGAAGAGAGAACAGATCAAGAACTACACACACATGGGGAGGCCCTTTGCTGCAAGCAAGAGATCGATGGAGGAGAAAAGAATGGTAGCAATAGATACCTACCTGACCCTTTGCTGCTGCGGCGTCCTGGCCCTGCTGGATCCAAGATCGCTGGGGTAGGATGGAACAGAGTCGAGTGCCATCTCGGTCTCGGAGAAGAAGCGGAGATTTTGTGGGGGCCGAGTGGTCTCGCTTGGTAGGGAAGAGGGAGAGGAAGAAGAAGGCGTGGGAATT

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CDS seq

ATGGCACTCGACTCTGTTCCATCCTACCCCAGCGATCTTGGATCCAGCAGGGCCAGGACGCCGCAGCAGCAAAGGGTCAGCCCCAGGAAGGAGGAGCGGACATGGACGACCGACACCTACGCGCCGTACGACGACGGCCACCAGTGGAGGAAGTACGGCGAGAAGAAACTCTCCAATTCCAACTTCCCAAGGTTCTATTACAGATGCACCTACAAGAATGACATGAAGTGCCCTGCTACGAAGCAAGTCCAGCAGAAGGACACTAATGATCCACCATTGTTCTCAGTCACTTACTTCAACCACCACACCTGCAACAGCAGCTCAAAGATCGTAGGCAGCACTCCTGATTCTACTGTGCAGTCGAGGAAAGCCATTTCGATCTGCTTCAATTCACATGGCCAAACCGGTGAACAGCCCACATTCTTGTCATCATCAGCTTCCTTGTTGTCACCGAGCATGCAGTCGTACAGTTCCAACCAGCAACCTGACATGAACACCTACAGTCGCCAGTTTCAGTGGGCAGACACATCGTCATCTACAAGCAATGCTCCGGTTAAGATGGAGGCGGACGATTATGCAGAAGCAAGTGCTTCACCCAGTACCACTGGTGCTCTGTCGAGGACATTGCTGCCGATCGGTCAGTCAAGATGCATCGAGTATTTCCATTTCTTGTGA

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Protein seq

MALDSVPSYPSDLGSSRARTPQQQRVSPRKEERTWTTDTYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSVTYFNHHTCNSSSKIVGSTPDSTVQSRKAISICFNSHGQTGEQPTFLSSSASLLSPSMQSYSSNQQPDMNTYSRQFQWADTSSSTSNAPVKMEADDYAEASASPSTTGALSRTLLPIGQSRCIEYFHFL

Function WRKY transcription factor 55 [UniProtKB/Swiss-Prot:Q9SHB5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_11g0001180 OsARC_11g0001180.02 Chr11 795439 799178 - NAM
CDS seq

ATGGCACTCGACTCTGTTCCATCCTACCCCAGCGATCTTGGATCCAGCAGGGCCAGGACGCCGCAGCAGCAAAGGGTCAGGAAGGAGGAGCGGACATGGACGACCGACACCTACGCGCCGTACGACGACGGCCACCAGTGGAGGAAGTACGGCGAGAAGAAACTCTCCAATTCCAACTTCCCAAGGTTCTATTACAGATGCACCTACAAGAATGACATGAAGTGCCCTGCTACGAAGCAAGTCCAGCAGAAGGACACTAATGATCCACCATTGTTCTCAGTCACTTACTTCAACCACCACACCTGCAACAGCAGCTCAAAGATCGTAGGCAGCACTCCTGATTCTACTGTGCAGTCGAGGAAAGCCATTTCGATCTGCTTCAATTCACATGGCCAAACCGGTGAACAGCCCACATTCTTGTCATCATCAGCTTCCTTGTTGTCACCGAGCATGCAGTCGTACAGTTCCAACCAGCAACCTGACATGAACACCTACAGTCGCCAGTTTCAGTGGGCAGACACATCGTCATCTACAAGCAATGCTCCGGTTAAGATGGAGGCGGACGATTATGCAGAAGCAAGTGCTTCACCCAGTACCACTGGTGCTCTGTCGAGGACATTGCTGCCGATCGGTCAGTCAAGATGCATCGAGTATTTCCATTTCTTGTGA

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Protein seq

MALDSVPSYPSDLGSSRARTPQQQRVRKEERTWTTDTYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSVTYFNHHTCNSSSKIVGSTPDSTVQSRKAISICFNSHGQTGEQPTFLSSSASLLSPSMQSYSSNQQPDMNTYSRQFQWADTSSSTSNAPVKMEADDYAEASASPSTTGALSRTLLPIGQSRCIEYFHFL

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Gene Transcript Chromosome Start End Strand Source
OsARC_11g0001180 OsARC_11g0001180.01 Chr11 795439 799178 - NAM
CDS seq

ATGGCACTCGACTCTGTTCCATCCTACCCCAGCGATCTTGGATCCAGCAGGGCCAGGACGCCGCAGCAGCAAAGGGTCAGCCCCAGGAAGGAGGAGCGGACATGGACGACCGACACCTACGCGCCGTACGACGACGGCCACCAGTGGAGGAAGTACGGCGAGAAGAAACTCTCCAATTCCAACTTCCCAAGGTTCTATTACAGATGCACCTACAAGAATGACATGAAGTGCCCTGCTACGAAGCAAGTCCAGCAGAAGGACACTAATGATCCACCATTGTTCTCAGTCACTTACTTCAACCACCACACCTGCAACAGCAGCTCAAAGATCGTAGGCAGCACTCCTGATTCTACTGTGCAGTCGAGGAAAGCCATTTCGATCTGCTTCAATTCACATGGCCAAACCGGTGAACAGCCCACATTCTTGTCATCATCAGCTTCCTTGTTGTCACCGAGCATGCAGTCGTACAGTTCCAACCAGCAACCTGACATGAACACCTACAGTCGCCAGTTTCAGTGGGCAGACACATCGTCATCTACAAGCAATGCTCCGGTTAAGATGGAGGCGGACGATTATGCAGAAGCAAGTGCTTCACCCAGTACCACTGGTGCTCTGTCGAGGACATTGCTGCCGATCGGTCAGTCAAGATGCATCGAGTATTTCCATTTCTTGTGA

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Protein seq

MALDSVPSYPSDLGSSRARTPQQQRVSPRKEERTWTTDTYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSVTYFNHHTCNSSSKIVGSTPDSTVQSRKAISICFNSHGQTGEQPTFLSSSASLLSPSMQSYSSNQQPDMNTYSRQFQWADTSSSTSNAPVKMEADDYAEASASPSTTGALSRTLLPIGQSRCIEYFHFL

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Gene Transcript Chromosome Start End Strand Source
OsARC_11g0001180 OsARC_11g0001180.03 Chr11 795439 799174 - IsoSeq
CDS seq

CCACGCCTTCTTCTTCCTCTCCCTCTTCCCTACCAAGCGAGACCACTCGGCCCCCACAAAATCTCCGCTTCTTCTCCGAGACCGAGATGGCACTCGACTCTGTTCCATCCTACCCCAGCGATCTTGGATCCAGCAGGGCCAGGACGCCGCAGCAGCAAAGGGTCAGGAGGAGCGGACATGGACGACCGACACCTACGCGCCGTACGACGACGGCCACCAGTGGAGGAAGTACGGCGAGAAGAAACTCTCCAATTCCAACTTCCCAAGGTTCTATTACAGATGCACCTACAA

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Protein seq

PRLLLPLPLPYQARPLGPHKISASSPRPRWHSTLFHPTPAILDPAGPGRRSSKGSGGADMDDRHLRAVRRRPPVEEVRREETLQFQLPKVLLQMHLQ

OsARC_11g0001180.03OsARC_11g0001180.02OsARC_11g0001180.01AS795339 bp796000 bp797000 bp798000 bp799000 bp800000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr11 798857 799008 - OsARC_11g0001180.01 OsARC_11g0001180.03,OsARC_11g0001180.01 All
A3 Chr11 798861 799008 - OsARC_11g0001180.01 OsARC_11g0001180.02,OsARC_11g0001180.01 All
A3 Chr11 798857 799008 - OsARC_11g0001180.02 OsARC_11g0001180.03,OsARC_11g0001180.02 All

Expression

Leaf Root Panicle
FPKM 0.133797 0.413119 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0116900 RBH 1.143678 1.519162 2.472182
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g02480 RBH 0.764053 1.009395 0.630243
Nipponbare | IRGSP 1.0 | RAP-db Os11g0116900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0001170 RBH 0.178213 11.077486 1.784824
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0001210 RBH 0.181790 1.486510 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0001190 RBH 0.769709 10.742676 4.616126
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0001060 RBH 0.000000 0.304912 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0001200 RBH 2.115523 8.075535 5.129489
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0015200 RBH 1.9657465 26.9683835 14.4455195
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0001200 RBH 0.000000 0.750222 0.230580
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0017000 RBH 2.902612 30.051946 8.87101
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0001080 RBH 0.000000 0.093686 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0001180 RBH 0.511882 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0001200 RBH 4.254130 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0001180 RBH 0.000000 0.0 0.881368
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0001230 RBH 0.0 3.891492 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G001170 RBH 0.407975 0.834360 0.665747
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0001170 RBH 0.927312 11.093688 3.304132
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Huazhong Agricultural University

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