Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0021640 | OGI:10056700 | 11/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:24536448-24538601 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGTGTGTCCAATGCCGCACAACACAAAAAAGGAGAAAGACTCTTTTGTGCAATATTATATCAGTGCTCCTGGCTTCGAGTCCAACGCACTGAAGGGTGCTGAGGAAGTAATTAAGAGGATATTTCCCAGCGCCATGAACAATTGGGCTCAGGACCATTTTAGGACCACATTTGTTGTGTGGATTGTCGGCATGTTTCTTGCACCGAAGATGTCGCACAAATCTGGATCGAACGACTTCTGGGGGGCACTCCTTAATGTGGAAGAAATCAAGAACTACAATTGGGCGAAATACGTCATCGACCACCTTATTGACGTTGCACCGAAGGCACAGCACGACATCAAGCATAAAGATAAGGTGGCGAACAAGGCGGGATGCTCACTGCTTTTGCAGGTAAGTTCAGCGTGGCGCCGTCATGAATCGCTAACACAAACAAGCACCGTTATTCATCACTCATCCACCGTGTTTTATTTTTTTCTTTAGATCCTTTACCTGGACAATGCCGCGTTCGAGGGGGAGCTGAGCATTCCACAAAACGTCGAGCCAAAATTAGCAATGTTTGACAAGAAGCTAAGATGGATGCTGACACGCTTGCGGGGCGGCCGAAGCATGGGGAGACACCCGTCTACGGTATCAGCTGGGTTTGTACGCAATGTACATCAGCATTGGAAGAAAATGGGCGCCACATGCCTTATAGATTTGTGTGGTTCATTTTTATTCATAAATTACATTGGTTGAAAATAAAAAAAAAACTTCTGCTCCACATATCAACATGTACCTCAAATTCAACTCTGCACCATGACTTCCTGCGGGCTGCATCGAAGTACCTTAGTGTGTTTAGTTCCTAAAAAAAAGTTGAAAGTTTAGGAAAAATTGAAAGATTTGGAAAAAAAAGTTGGAAGTTTATGTGTGATGTGATATAGTGTGATAAAAATTTAGAAGTTTGGGGTAGTTAGGGGTGAACTAAACACGGCCTTACCCTCAAAGCACCAACTCCATCCACATGACCGGTGACAACGTACTGGGTGGATTCCCCTAGTTCTCCGTCTACAGGGAACGTTGGCTTCAACCACAACCTCTTCTGCAACACGATGCAATATTTCTTTTGTCAGGTTAACTATTGTGGGCTCAAAATTTTTACAAAATCGAGAAGGAAGGTTTTTTTAGATTTAAACACAATACCTGTTTGTTAGCCTTCTCAGCGTTGGCATCATCACTCTCTCTATCAAACTGGAGCTTTGCAAACTGCTCGATGAAACGGTTCAAGGTGGAGTTTCTAGGCATTATGCTCTTCAGCATAAAGTTGGCGCTCTCACTGCGCTGTGTGCTGGCCATGCGCGCGCAGTACACACCTGTCATCCCCTCCAATGGCGCCATCATCCCCTCCAACAAGCACAACGGAGTCCGGTCTCCCTCGACTCCTACTCCGACGGTTACATTTTTTACAATTTGCAGCTAACATGACACCACGCTTGGCTAACCAGGAGCAAAAAAGACATGGAAAAAAATGCACGGAGACCTAATTACCTTGGACCAACACCTTCGTCACACGTCAATTTAAAAGTATTCGAGAGAGAAAAAAAAACATCATAAAATTTAAAAATGAAGTTACATCCAAAAAAGAAGCGAGGTCTTTTGGTTTGAAGTCTCACTCTCTCAACTTCATCTTGCTATCTTCCTTTGCCAGCAGAGGAAGCAGGTACTGTACCAAGCCCAGAGAGCAATACACATATAGGTGTGCTCCTAGATGTCCCAATAACAAATAAGCTCAGATAAAAAAAAGATTTTATTTAAGTTCGAATCAATTTTGGTCATCCCAAAAATTGGCTCGCTTGGTCTTAATTATAATCAATAATTTTTAAACAACATCTCAGTAATCAGAATGTGCAAAAACAAATGTGCTGTAGGTTTCTTTCTTTCGTCCAACAAAATGTATGGGAAAAACAAGCAACCATGGACAAATTCGTTCACCATTATTGCTAAAAAAAATTGAAACTTTAAAAGCCCTGGAGTTCTTGCGTGGCGGCGACGAAGAATGCGTGCTCCTGCCTCGTCTCAGCGTCTGCCAATGAACGGATGGAGAAGGACCTCCAAGAAGCTCGTGTTGTTCCTTCGTCTCGGCTCGCCGGCGTCCGCTCACAGTACGAATGA
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| CDS seq | ATGGAGGTGTGTCCAATGCCGCACAACACAAAAAAGGAGAAAGACTCTTTTGTGCAATATTATATCAGTGCTCCTGGCTTCGAGTCCAACGCACTGAAGGGTGCTGAGGAAGTAATTAAGAGGATATTTCCCAGCGCCATGAACAATTGGGCTCAGGACCATTTTAGGACCACATTTGTTGTGTGGATTGTCGGCATGTTTCTTGCACCGAAGATGTCGCACAAATCTGGATCGAACGACTTCTGGGGGGCACTCCTTAATGTGGAAGAAATCAAGAACTACAATTGGGCGAAATACGTCATCGACCACCTTATTGACGTTGCACCGAAGGCACAGCACGACATCAAGCATAAAGATAAGGTGGCGAACAAGGCGGGATGCTCACTGCTTTTGCAGATCCTTTACCTGGACAATGCCGCGTTCGAGGGGGAGCTGAGCATTCCACAAAACGTCGAGCCAAAATTAGCAATGTTTGACAAGAAGCTAAGATGGATGCTGACACGCTTGCGGGGCGGCCGAAGCATGGGGAGACACCCGTCTACGGTATCAGCTGGGTTTGTACGCAATCCCTGGAGTTCTTGCGTGGCGGCGACGAAGAATGCGTGCTCCTGCCTCGTCTCAGCGTCTGCCAATGAACGGATGGAGAAGGACCTCCAAGAAGCTCGTGTTGTTCCTTCGTCTCGGCTCGCCGGCGTCCGCTCACAGTACGAATGA
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| Protein seq | MEVCPMPHNTKKEKDSFVQYYISAPGFESNALKGAEEVIKRIFPSAMNNWAQDHFRTTFVVWIVGMFLAPKMSHKSGSNDFWGALLNVEEIKNYNWAKYVIDHLIDVAPKAQHDIKHKDKVANKAGCSLLLQILYLDNAAFEGELSIPQNVEPKLAMFDKKLRWMLTRLRGGRSMGRHPSTVSAGFVRNPWSSCVAATKNACSCLVSASANERMEKDLQEARVVPSSRLAGVRSQYE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0021640 | OsARC_10g0021640.01 | Chr10 | 24536448 | 24538601 | + | NAM | ||
| CDS seq | ATGGAGGTGTGTCCAATGCCGCACAACACAAAAAAGGAGAAAGACTCTTTTGTGCAATATTATATCAGTGCTCCTGGCTTCGAGTCCAACGCACTGAAGGGTGCTGAGGAAGTAATTAAGAGGATATTTCCCAGCGCCATGAACAATTGGGCTCAGGACCATTTTAGGACCACATTTGTTGTGTGGATTGTCGGCATGTTTCTTGCACCGAAGATGTCGCACAAATCTGGATCGAACGACTTCTGGGGGGCACTCCTTAATGTGGAAGAAATCAAGAACTACAATTGGGCGAAATACGTCATCGACCACCTTATTGACGTTGCACCGAAGGCACAGCACGACATCAAGCATAAAGATAAGGTGGCGAACAAGGCGGGATGCTCACTGCTTTTGCAGATCCTTTACCTGGACAATGCCGCGTTCGAGGGGGAGCTGAGCATTCCACAAAACGTCGAGCCAAAATTAGCAATGTTTGACAAGAAGCTAAGATGGATGCTGACACGCTTGCGGGGCGGCCGAAGCATGGGGAGACACCCGTCTACGGTATCAGCTGGGTTTGTACGCAATCCCTGGAGTTCTTGCGTGGCGGCGACGAAGAATGCGTGCTCCTGCCTCGTCTCAGCGTCTGCCAATGAACGGATGGAGAAGGACCTCCAAGAAGCTCGTGTTGTTCCTTCGTCTCGGCTCGCCGGCGTCCGCTCACAGTACGAATGA
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| Protein seq | MEVCPMPHNTKKEKDSFVQYYISAPGFESNALKGAEEVIKRIFPSAMNNWAQDHFRTTFVVWIVGMFLAPKMSHKSGSNDFWGALLNVEEIKNYNWAKYVIDHLIDVAPKAQHDIKHKDKVANKAGCSLLLQILYLDNAAFEGELSIPQNVEPKLAMFDKKLRWMLTRLRGGRSMGRHPSTVSAGFVRNPWSSCVAATKNACSCLVSASANERMEKDLQEARVVPSSRLAGVRSQYE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g42910 | RBH | 0.067776 | 0.047754 | 0.027023 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0021300 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0021080 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014760 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0298000 | RBH | 0.006121 | 0 | 0.0964205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0407900 | RBH | 0.8976425 | 0.019908 | 1.11266 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014690 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
