Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0014140 | OGI:04014620 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:18650147-18650839 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaattcctactagctgaagtctcaccgggaacgttgccctgcttgctgattcccgatggtggagtggcaactgtcttgacagctgtaacaggtagcatcttcttgcccgtggggttaccgagcggtgatttgtcgatgggcctccggattggagcaatacgaggtgcattgctagagctgacaacagtcgggcaacctggtgctgacgacacttgctgcgggtgctgacgaaggagcatactgcctctttgtaactgtagcgagctgttgttctcccggcattgcttaccctgctggcgctggtgctgtaggcttgaaacgatggctggtggaacaatgcggcctctgacggtgcccttgacgatgatccgttgaggctgaggttgcacattcaggtgtcgattggggtcgggggcagtgctggtaacttgtgaatcacgacgaactgcctttgctgctcttggaagaggacaatcactgaaacgatgtcctggcttacgacagttgcgacagaatcgacttgcttggtcccggggtgcaggcttctgattatgcactttggcagctgaaacgggaacaagcagagacttatgaacatccttggtgacgttgcttcttccatggttggcttccactggagctagagttggaggaagagcagaaggattgtgaccgctgttgccgattgtcat
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| CDS seq | atgacaatcggcaacagcggtcacaatccttctgctcttcctccaactctagctccagtggaagccaaccatggaagaagcaacgtcaccaaggatgttcataagtctctgcttgttcccgtttcagctgccaaagtgcataatcagaagcctgcaccccgggaccaagcaagtcgattctgtcgcaactgtcgtaagccaggacatcgtttcagtgattgtcctcttccaagagcagcaaaggcagttcgtcgtgattcacaagttaccagcactgcccccgaccccaatcgacacctgaatgtgcaacctcagcctcaacggatcatcgtcaagggcaccgtcagaggccgcattgttccaccagccatcgtttcaagcctacagcaccagcgccagcagggtaagcaatgccgggagaacaacagctcgctacagttacaaagaggcagtatgctccttcgtcagcacccgcagcaagtgtcgtcagcaccaggttgcccgactgttgtcagctctagcaatgcacctcgtattgctccaatccggaggcccatcgacaaatcaccgctcggtaaccccacgggcaagaagatgctacctgttacagctgtcaagacagttgccactccaccatcgggaatcagcaagcagggcaacgttcccggtgagacttcagctagtaggaattaa
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| Protein seq | MTIGNSGHNPSALPPTLAPVEANHGRSNVTKDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHRFSDCPLPRAAKAVRRDSQVTSTAPDPNRHLNVQPQPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCRENNSSLQLQRGSMLLRQHPQQVSSAPGCPTVVSSSNAPRIAPIRRPIDKSPLGNPTGKKMLPVTAVKTVATPPSGISKQGNVPGETSASRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0014140 | OsARC_10g0014140.01 | Chr10 | 18650147 | 18650839 | - | NAM | ||
| CDS seq | atgacaatcggcaacagcggtcacaatccttctgctcttcctccaactctagctccagtggaagccaaccatggaagaagcaacgtcaccaaggatgttcataagtctctgcttgttcccgtttcagctgccaaagtgcataatcagaagcctgcaccccgggaccaagcaagtcgattctgtcgcaactgtcgtaagccaggacatcgtttcagtgattgtcctcttccaagagcagcaaaggcagttcgtcgtgattcacaagttaccagcactgcccccgaccccaatcgacacctgaatgtgcaacctcagcctcaacggatcatcgtcaagggcaccgtcagaggccgcattgttccaccagccatcgtttcaagcctacagcaccagcgccagcagggtaagcaatgccgggagaacaacagctcgctacagttacaaagaggcagtatgctccttcgtcagcacccgcagcaagtgtcgtcagcaccaggttgcccgactgttgtcagctctagcaatgcacctcgtattgctccaatccggaggcccatcgacaaatcaccgctcggtaaccccacgggcaagaagatgctacctgttacagctgtcaagacagttgccactccaccatcgggaatcagcaagcagggcaacgttcccggtgagacttcagctagtaggaattaa
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| Protein seq | MTIGNSGHNPSALPPTLAPVEANHGRSNVTKDVHKSLLVPVSAAKVHNQKPAPRDQASRFCRNCRKPGHRFSDCPLPRAAKAVRRDSQVTSTAPDPNRHLNVQPQPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCRENNSSLQLQRGSMLLRQHPQQVSSAPGCPTVVSSSNAPRIAPIRRPIDKSPLGNPTGKKMLPVTAVKTVATPPSGISKQGNVPGETSASRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g14860 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005160 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010360 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012820 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0531400 | SBH | 0.048211 | 0 | 0.4520115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012840 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0293700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012570 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0011810 | SBH | 0.776666 | 1.890678 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012580 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008570 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013920 | RBH | 0.0 | 0.0 | 0.0 |
