Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0008540 | OGI:10039040 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:12655633-12656984 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGGCCGTGCTCGCCCTCCTCTCCACCGGCCTCTCCCTCTCCCTCTCCCTCTCCCGCGCGGACCTCGCCGCCGTCGTCGTCGCCGAGCCACGGCTGCTCTGCGCGAAGGCCGACACCATCGCCGCCAGCGCTCGGTTGGGTCATCCCGTCCGTCGTCGTCGCCGAGCCCACCGCCGCCGACGTCGCCCGAGCCCGCCGCCGCCGCTGTCGCCCGAGCCGTCTACCGCCGCCGTCGCCGAGCCCCCCGCAGCCGCTCATCGACTCCATCAAGGAGGCCGGCGGCGACCACGTCCAGAGGTGAGGGCAGAGGCGGCGTCGGCCATAGTTGTTGCAAACGGCGTTGTCGGTGGTTGCAAACGGCACTCATCCCATCCCTCCCTCGTTCCTTGAACCAAACAAAAAACTGGGATTGTCCTATTCTACAAACCAAACACCCGAATGGAATCATTCCAATCCTCAAATCAGGGATGGTTTCATCCCATCCCACCTAGTCCTAGAACCAAACCTAGTCCCAGAACCAAACACACACTAAGAGAATTTTGAGAGAAATTAAGAAATAGAGGAGGTTATTCACTACCACACACATGAAGGAAAAATACTCAAATCCGTGGTATAATATACTCAAGTTTATCAATAGTTTGGTAATATTATTAAAATTTCATAATTTAACACAAATTTGTTCTTTACCACAGTGCAGGTAAAACAAAAAATCTATCCTGGAATTGTTCTGCTTTAGGTCCCTCAGAGTTATATTTTGAATTTCATTTGCGTCCCTCGACCATAAAATTAGATATAGAGAATCCTTCAATTATCAAAAACTAGTGTCAATTGAGTCCCTCTGCAGTGTTCACTGGCAATTCAGCACCCCTCTCTTCTTTTTCTTCTCATGTGACCGACATGTGGGCCTCACTCAACCACGTAGAACAAAATCCATTATGAAACCCAGACACAAAATGGACTGGTTTTGATAATTGAGAGATGTTGTATAGCCGATTTTATGGTCGAGGGACGTAAATTAAACTCGGCCTATAGTTGAGTGACTTAAAATTCTTGTTACCGAAATTTGGTTTGGTTAAAATAGTGAATGCATCAAAATTAAATTTTGTGTAGTACTGCGAATGGAAGACTACGAAATTACCATTTTTTTGGGTAGAGATTAGCCAATCTGCAGGTTGCAATCCAAGTTCCGACAGAAGGACGGTAAGCAAGAAAGTGAAATTAACTAATCCACAATAAAGTGTGTAATGAACGGCGCCATAAATGGCCAAAGCACTAATCAAATGTTACTAAATCCCTGGCACTTCATCAAATTTAGGTTAAAACCGTCACCACCAAAGTACCAGAATTAA
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| CDS seq | ATGGTGGCCGTGCTCGCCCTCCTCTCCACCGGCCTCTCCCTCTCCCTCTCCCTCTCCCGCGCGGACCTCGCCGCCGTCGTCGTCGCCGAGCCACGGCTGCTCTGCGCGAAGGCCGACACCATCGCCGCCAGCGCTCGGTTGGGTCATCCCAGATTAGCCAATCTGCAGGTTGCAATCCAAGTTCCGACAGAAGGACGGTTAAAACCGTCACCACCAAAGTACCAGAATTAA |
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| Protein seq | MVAVLALLSTGLSLSLSLSRADLAAVVVAEPRLLCAKADTIAASARLGHPRLANLQVAIQVPTEGRLKPSPPKYQN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0008540 | OsARC_10g0008540.01 | Chr10 | 12655633 | 12656984 | + | NAM | ||
| CDS seq | ATGGTGGCCGTGCTCGCCCTCCTCTCCACCGGCCTCTCCCTCTCCCTCTCCCTCTCCCGCGCGGACCTCGCCGCCGTCGTCGTCGCCGAGCCACGGCTGCTCTGCGCGAAGGCCGACACCATCGCCGCCAGCGCTCGGTTGGGTCATCCCAGATTAGCCAATCTGCAGGTTGCAATCCAAGTTCCGACAGAAGGACGGTTAAAACCGTCACCACCAAAGTACCAGAATTAA
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| Protein seq | MVAVLALLSTGLSLSLSLSRADLAAVVVAEPRLLCAKADTIAASARLGHPRLANLQVAIQVPTEGRLKPSPPKYQN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008350 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008220 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0200300 | RBH | 0.3596195 | 0.8469365 | 5.284324 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0214600 | RBH | 0 | 0.0135605 | 0.0139865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008380 | RBH | 0.0 | 0.0 | 0.0 |
