Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0008300 | OGI:10038280 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:12377002-12378540 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGCCGCCGCCGCCGCGCGCGCTGCCGCTGCCGCACTTCACCCTCCCGCCGCTCGCCGGCGAGGACCTCCTCTTCGTGACCGCCCTCCGCGCCCACCTCTCCACCGCGCCGCCGCCGCCGACGACGACCGCCGCCTCCCTCTCCCGCTTCCTCCCCCACCTCACCCCGCTCCGCCTCTCCCACCTCATCCTCGCGCCCCCGCCCCCGCCCCGCCACGACGACAGCGGCCACCTCCTCCTCGCCTCCCTCCTCCCGTCGCCGCCGCCGCCGCTCCCCTTCGCGCTCCTCCTCCACTCCCTCCGCCCGCGCCGCTCCTCCGCCCTCCTCGCCTCCTTGCTCCCTTCCATTCCGCACCACGCCTTCCCGGACCTCCTCCACCACGTCCTCCTCACCGCCCGCCTCACCGCCGCCCGCCCCGATGGCGGCGCCGTCCCGGCTCTCGACGTGCTCTTCTCCGTCTGCGCGCGGGGGAAGAAGCTCTCCCTGGCCACGCTCGCGTTCCGCGCCATGCGCGCCCACGGCCTGCTCCCCCGCGTCGTGTCCTGCAACGTCTTCATCTCCGCCGCGCTCGGCCTCAGGCGCCCCGAGATCGCCCTGTCATTCTTCCGGGAGATGCGGCGGTGTAGGATCTCGCCGAACATCTACACGGCGAACATGGTGCTGCGGGCGTTCTGCGATCTTGGGCGGACCGCGGATGCGGCCGAGGTGCTCGACAAAATGCCGGAGTGGGGCGTTGGAAGGACAACGGTCAGTTTCAACACGCTGATCGCGGCTTACTGCAGGGATGGTGTTGACGCAGGGCCTGCGCTGCAGCTGAAGATGAAGATGGAGCAGGAGGGGTTGGTGCCTGACGTGGTGACGTATGACACGATCATCCATGGGCTGTGCAAGGAGGGGAGGATGGGAAAGGCGAACCAGGTGCTGAGCGAGATGAGGGCGAAGGGGGTTATGCCCAACACGGTCACGTATAACACGCTGATTCATGGGTACGTGGCGCTTGGTGATAATGCCATGGCGGGTAGGGTTCATGAGGAGATGGTGAAGAACCGAGTGGAGCTTGATATCGTGACATACAATGCGCTCATTCTTGGGCTTTGCAATGAAGGGAAGATGAAGAAGGTAGAGCACTTGCTTCGGGAGTTTGACAGGGCTAAGCTTGAACCGAATGCATCAACCTTTTCAGCGCTGATTGTTGGGTGGTGCAAGATGCAGAACTCAGAGAGAGCACTACAGCTGTTGAATGTGATGAAGAAAAGTGGCTTCCATCCAAATTACACCACTTATAAGATGGTTATATCTTCTTTCTGCAAGAACAAGGATTTAGAAGGAGCAGTTGATGTGATGGGGGATATGTTGGGGAGGTGCATTGCTCCTGACAAGGCCTTGTTGAATGAATTTTTTGATGGTCTCTGGAAGGCTAAAAAATTACATCTGGCAGAGAACCTCCGATCACTGAATAATGGTTTGAAGTTCATTCCTGATGTCTACTATACTGGTGATTACAGGAATAAGGATGAAGTGATAAACAGATGCTAA
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| CDS seq | ATGCCGCCGCCGCCGCCGCGCGCGCTGCCGCTGCCGCACTTCACCCTCCCGCCGCTCGCCGGCGAGGACCTCCTCTTCGTGACCGCCCTCCGCGCCCACCTCTCCACCGCGCCGCCGCCGCCGACGACGACCGCCGCCTCCCTCTCCCGCTTCCTCCCCCACCTCACCCCGCTCCGCCTCTCCCACCTCATCCTCGCGCCCCCGCCCCCGCCCCGCCACGACGACAGCGGCCACCTCCTCCTCGCCTCCCTCCTCCCGTCGCCGCCGCCGCCGCTCCCCTTCGCGCTCCTCCTCCACTCCCTCCGCCCGCGCCGCTCCTCCGCCCTCCTCGCCTCCTTGCTCCCTTCCATTCCGCACCACGCCTTCCCGGACCTCCTCCACCACGTCCTCCTCACCGCCCGCCTCACCGCCGCCCGCCCCGATGGCGGCGCCGTCCCGGCTCTCGACGTGCTCTTCTCCGTCTGCGCGCGGGGGAAGAAGCTCTCCCTGGCCACGCTCGCGTTCCGCGCCATGCGCGCCCACGGCCTGCTCCCCCGCGTCGTGTCCTGCAACGTCTTCATCTCCGCCGCGCTCGGCCTCAGGCGCCCCGAGATCGCCCTGTCATTCTTCCGGGAGATGCGGCGGTGTAGGATCTCGCCGAACATCTACACGGCGAACATGGTGCTGCGGGCGTTCTGCGATCTTGGGCGGACCGCGGATGCGGCCGAGGTGCTCGACAAAATGCCGGAGTGGGGCGTTGGAAGGACAACGGTCAGTTTCAACACGCTGATCGCGGCTTACTGCAGGGATGGTGTTGACGCAGGGCCTGCGCTGCAGCTGAAGATGAAGATGGAGCAGGAGGGGTTGGTGCCTGACGTGGTGACGTATGACACGATCATCCATGGGCTGTGCAAGGAGGGGAGGATGGGAAAGGCGAACCAGGTGCTGAGCGAGATGAGGGCGAAGGGGGTTATGCCCAACACGGTCACGTATAACACGCTGATTCATGGGTACGTGGCGCTTGGTGATAATGCCATGGCGGGTAGGGTTCATGAGGAGATGGTGAAGAACCGAGTGGAGCTTGATATCGTGACATACAATGCGCTCATTCTTGGGCTTTGCAATGAAGGGAAGATGAAGAAGGTAGAGCACTTGCTTCGGGAGTTTGACAGGGCTAAGCTTGAACCGAATGCATCAACCTTTTCAGCGCTGATTGTTGGGTGGTGCAAGATGCAGAACTCAGAGAGAGCACTACAGCTGTTGAATGTGATGAAGAAAAGTGGCTTCCATCCAAATTACACCACTTATAAGATGGTTATATCTTCTTTCTGCAAGAACAAGGATTTAGAAGGAGCAGTTGATGTGATGGGGGATATGTTGGGGAGGTGCATTGCTCCTGACAAGGCCTTGTTGAATGAATTTTTTGATGGTCTCTGGAAGGCTAAAAAATTACATCTGGCAGAGAACCTCCGATCACTGAATAATGGTTTGAAGTTCATTCCTGATGTCTACTATACTGGTGATTACAGGAATAAGGATGAAGTGATAAACAGATGCTAA
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| Protein seq | MPPPPPRALPLPHFTLPPLAGEDLLFVTALRAHLSTAPPPPTTTAASLSRFLPHLTPLRLSHLILAPPPPPRHDDSGHLLLASLLPSPPPPLPFALLLHSLRPRRSSALLASLLPSIPHHAFPDLLHHVLLTARLTAARPDGGAVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRAKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHLLREFDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGLWKAKKLHLAENLRSLNNGLKFIPDVYYTGDYRNKDEVINRC |
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| Function | Pentatricopeptide repeat-containing protein At4g26680, mitochondrial [UniProtKB/Swiss-Prot:Q9SZ10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0008300 | OsARC_10g0008300.01 | Chr10 | 12377002 | 12378540 | + | NAM | ||
| CDS seq | ATGCCGCCGCCGCCGCCGCGCGCGCTGCCGCTGCCGCACTTCACCCTCCCGCCGCTCGCCGGCGAGGACCTCCTCTTCGTGACCGCCCTCCGCGCCCACCTCTCCACCGCGCCGCCGCCGCCGACGACGACCGCCGCCTCCCTCTCCCGCTTCCTCCCCCACCTCACCCCGCTCCGCCTCTCCCACCTCATCCTCGCGCCCCCGCCCCCGCCCCGCCACGACGACAGCGGCCACCTCCTCCTCGCCTCCCTCCTCCCGTCGCCGCCGCCGCCGCTCCCCTTCGCGCTCCTCCTCCACTCCCTCCGCCCGCGCCGCTCCTCCGCCCTCCTCGCCTCCTTGCTCCCTTCCATTCCGCACCACGCCTTCCCGGACCTCCTCCACCACGTCCTCCTCACCGCCCGCCTCACCGCCGCCCGCCCCGATGGCGGCGCCGTCCCGGCTCTCGACGTGCTCTTCTCCGTCTGCGCGCGGGGGAAGAAGCTCTCCCTGGCCACGCTCGCGTTCCGCGCCATGCGCGCCCACGGCCTGCTCCCCCGCGTCGTGTCCTGCAACGTCTTCATCTCCGCCGCGCTCGGCCTCAGGCGCCCCGAGATCGCCCTGTCATTCTTCCGGGAGATGCGGCGGTGTAGGATCTCGCCGAACATCTACACGGCGAACATGGTGCTGCGGGCGTTCTGCGATCTTGGGCGGACCGCGGATGCGGCCGAGGTGCTCGACAAAATGCCGGAGTGGGGCGTTGGAAGGACAACGGTCAGTTTCAACACGCTGATCGCGGCTTACTGCAGGGATGGTGTTGACGCAGGGCCTGCGCTGCAGCTGAAGATGAAGATGGAGCAGGAGGGGTTGGTGCCTGACGTGGTGACGTATGACACGATCATCCATGGGCTGTGCAAGGAGGGGAGGATGGGAAAGGCGAACCAGGTGCTGAGCGAGATGAGGGCGAAGGGGGTTATGCCCAACACGGTCACGTATAACACGCTGATTCATGGGTACGTGGCGCTTGGTGATAATGCCATGGCGGGTAGGGTTCATGAGGAGATGGTGAAGAACCGAGTGGAGCTTGATATCGTGACATACAATGCGCTCATTCTTGGGCTTTGCAATGAAGGGAAGATGAAGAAGGTAGAGCACTTGCTTCGGGAGTTTGACAGGGCTAAGCTTGAACCGAATGCATCAACCTTTTCAGCGCTGATTGTTGGGTGGTGCAAGATGCAGAACTCAGAGAGAGCACTACAGCTGTTGAATGTGATGAAGAAAAGTGGCTTCCATCCAAATTACACCACTTATAAGATGGTTATATCTTCTTTCTGCAAGAACAAGGATTTAGAAGGAGCAGTTGATGTGATGGGGGATATGTTGGGGAGGTGCATTGCTCCTGACAAGGCCTTGTTGAATGAATTTTTTGATGGTCTCTGGAAGGCTAAAAAATTACATCTGGCAGAGAACCTCCGATCACTGAATAATGGTTTGAAGTTCATTCCTGATGTCTACTATACTGGTGATTACAGGAATAAGGATGAAGTGATAAACAGATGCTAA
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| Protein seq | MPPPPPRALPLPHFTLPPLAGEDLLFVTALRAHLSTAPPPPTTTAASLSRFLPHLTPLRLSHLILAPPPPPRHDDSGHLLLASLLPSPPPPLPFALLLHSLRPRRSSALLASLLPSIPHHAFPDLLHHVLLTARLTAARPDGGAVPALDVLFSVCARGKKLSLATLAFRAMRAHGLLPRVVSCNVFISAALGLRRPEIALSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWGVGRTTVSFNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRAKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMKKVEHLLREFDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGLWKAKKLHLAENLRSLNNGLKFIPDVYYTGDYRNKDEVINRC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.046338 | 0.114857 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0363500 | RBH | 0.437662 | 0.790826 | 0.376953 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21920 | RBH | 0.273171 | 0.547104 | 0.099809 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0363500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008090 | RBH | 0.121806 | 1.705087 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008130 | RBH | 0.191219 | 0.000000 | 0.639375 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008030 | RBH | 0.582594 | 1.957276 | 1.836126 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007420 | RBH | 0.222562 | 0.311062 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008190 | RBH | 1.371525 | 0.120047 | 4.070988 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0197300 | RBH | 0.7621435 | 2.1417495 | 1.0543755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008140 | RBH | 0.000000 | 0.034027 | 0.141874 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0210700 | RBH | 1.1306925 | 3.519342 | 5.1838255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0007880 | RBH | 0.107660 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007960 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008360 | RBH | 1.069455 | 11.208040 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007830 | RBH | 0.181637 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008440 | RBH | 0.171722 | 0.901017 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008140 | RBH | 0.212232 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008170 | RBH | 0.617606 | 0.0 | 0.805556 |
