Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0007440 | OGI:10040650 | 4/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:11045057-11046953 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTGTGCGCGGCGGTTGTGCAGGCGGCGCGGCGAGGGCGGCAGTCCGGAGCAGGGAGGCGGCGGCCGGTTGCGGGAGGGGCGACCGCGGGAGGGCTGGTCGCTGGATGGGTGGCACGGGAGCGGCGGCGTCAGAGCAGGCAGGCGGCAGGTGAGGTCGGCAGCCGGTCGCTTGGGCGGCGGCGGCGGCCGGTCGCTGGAGCAGGGGCGATGGCCGGTCGCTGGGGCGGCGGCGACGGCCGGCCGCTGGAGCGGGGGTGACGGCCGGCCGCTGGTGAGGGGCCGCGGCGGCGGTCGCTGGAAGGGCTGCGGCCCGCGGCCGGTCGCGCAGGAGCTGCGGCGCCTGGAGTAGGCCGGCGGCGGGAAGAGGTAGGCGCACGCGATGACTTGACGAAAATGACAAGGAAAATAGAGAAGGCAAGCCAATGTACTCCCAAATCTTGGGTTCCTGAAGGGTATGTATCAATTTTTCCCCCTCTTGTGATTGTTCAGATTTTTGCATATGGTGGTAGCACTGGTTAGGTGTAGTTTTGTGGCATACAGTAATCTTGTTGCATGCATCGTGTATAGGATGGATCCTGGTACAACATATTTGTTGAAAATCAGGCTCCAAGGGCATCATAGTAGAGAGAACTTCACCTATAAAACAGAGGAGGTGGTAGACAGTGACAGGACAAACTTCAAGGACTTTATTGATGACATTAGGGAGAAGTACCCATGGGGGGTGAATGAATTTATAACAGTGAACTACTATGATTCAGTAAACAAAAACTATCCTCAAGTGTGCTCAGACCAATGTATGCCAGAAATGTTTGTCAAGAATGCCACCACCAAGGAAATATCTATGTTGATTCAAGTTCATAGCAACAATGAGCCAGTTGTAGCTCTTCCACTTGCTGATTGGCCAACACCTGAAAAGATAGCTAGTGGGACAGTACATAATGCGGCTGACATACATGAGGTGCCATCCACTCCATCTCTTGCAGTGCCATCTCAGGCTACTATATCTCAGCCTAGCAGTAGCACACAACTTGTTGATAAGTACTTAGCAAATCCATTTAAACAAAATGAACATGTTGGTGTTGATGATGAAGGCATCTACTCCGATGATGAAATTGTTGTGGTTACTGCTGATGGTGAGCATGAGCGTACTGATGTGCCTAAGGTGGTTAGTGAGGAGGGAGAGGAAGAAGAGGAGGAAGAAGAGGAGGGGGAGGAGGAAGGGGAAGGGGAGGAGGAAGGGGACGAAGAAGGGGAGGGGGAGGAAGAAGGGGAAGGGGAGGAAGAAGGTGAGGGGGAGGAAGAAGAGGAGGGAGATGAGAAGGATTGGGTTGTTCAAGATTTTATTCCTGTCCAAAAAAAAGGCAAAAGAAGGCTACTAATGAACATTGTGAAACTAGCATTATTCCTGTTCCTAGTGAATCTTCAGCCCAAAATCCTTGCTTAGCTCCAACTATGTCATACCCACCAACCAAAAGCTGCCAAAGTGGGAAAAAAAGGACATACTATTACTTCATCAGATTCAATTAGGTATTTTGGTTTTCAGATTTCATTTTCACTGATCATTTTGTTTTTTAGTTACATTTTCCTTTCAAAGATTATTGTCTTACATTTATGTGAATCTTCAGATCAAGATCAGTGACAGGATCCAACCAACCGGAACCTTTGAGTGTGCTGATGCCACTACCAGCACTAGCACCTGACAAGTGCAAGGCCAAGGCCAAACCCAAGACAAAGACTAAAGCCAAGGTAGCCACTAAGAAAAACAAGGAAGATAGCACTGATGCTACACCTTTGGCTCAAATCAAGCGAAAAAAAGTTGTTCCCGTGACTCCAGATAGTCCAGCAATGGGGACAAGAAGCAAAAAGAAGAAATCTCTAGATTTTAATTTATACTAA
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| CDS seq | ATGACAAGGAAAATAGAGAAGGCAAGCCAATGTACTCCCAAATCTTGGGTTCCTGAAGGGATGGATCCTGGTACAACATATTTGTTGAAAATCAGGCTCCAAGGGCATCATAGTAGAGAGAACTTCACCTATAAAACAGAGGAGGTGGTAGACAGTGACAGGACAAACTTCAAGGACTTTATTGATGACATTAGGGAGAAGTACCCATGGGGGGTGAATGAATTTATAACAGTGAACTACTATGATTCAGTAAACAAAAACTATCCTCAAGTGTGCTCAGACCAATGTATGCCAGAAATGTTTGTCAAGAATGCCACCACCAAGGAAATATCTATGTTGATTCAAGTTCATAGCAACAATGAGCCAGTTGTAGCTCTTCCACTTGCTGATTGGCCAACACCTGAAAAGATAGCTAGTGGGACAGTACATAATGCGGCTGACATACATGAGGTGCCATCCACTCCATCTCTTGCAGTGCCATCTCAGGCTACTATATCTCAGCCTAGCAGTAGCACACAACTTGTTGATAAGTACTTAGCAAATCCATTTAAACAAAATGAACATGTTGGTGTTGATGATGAAGGCATCTACTCCGATGATGAAATTGTTGTGGTTACTGCTGATGGTGAGCATGAGCGTACTGATGTGCCTAAGGTGGTTAGTGAGGAGGGAGAGGAAGAAGAGGAGGAAGAAGAGGAGGGGGAGGAGGAAGGGGAAGGGGAGGAGGAAGGGGACGAAGAAGGGGAGGGGGAGGAAGAAGGGGAAGGGGAGGAAGAAGTGACAGGATCCAACCAACCGGAACCTTTGAGTGTGCTGATGCCACTACCAGCACTAGCACCTGACAAGTGCAAGGCCAAGGCCAAACCCAAGACAAAGACTAAAGCCAAGGTAGCCACTAAGAAAAACAAGGAAGATAGCACTGATGCTACACCTTTGGCTCAAATCAAGCGAAAAAAAGTTGTTCCCGTGACTCCAGATAGTCCAGCAATGGGGACAAGAAGCAAAAAGAAGAAATCTCTAGATTTTAATTTATACTAA
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| Protein seq | MTRKIEKASQCTPKSWVPEGMDPGTTYLLKIRLQGHHSRENFTYKTEEVVDSDRTNFKDFIDDIREKYPWGVNEFITVNYYDSVNKNYPQVCSDQCMPEMFVKNATTKEISMLIQVHSNNEPVVALPLADWPTPEKIASGTVHNAADIHEVPSTPSLAVPSQATISQPSSSTQLVDKYLANPFKQNEHVGVDDEGIYSDDEIVVVTADGEHERTDVPKVVSEEGEEEEEEEEEGEEEGEGEEEGDEEGEGEEEGEGEEEVTGSNQPEPLSVLMPLPALAPDKCKAKAKPKTKTKAKVATKKNKEDSTDATPLAQIKRKKVVPVTPDSPAMGTRSKKKKSLDFNLY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0007440 | OsARC_10g0007440.01 | Chr10 | 11045057 | 11046953 | + | NAM | ||
| CDS seq | ATGACAAGGAAAATAGAGAAGGCAAGCCAATGTACTCCCAAATCTTGGGTTCCTGAAGGGATGGATCCTGGTACAACATATTTGTTGAAAATCAGGCTCCAAGGGCATCATAGTAGAGAGAACTTCACCTATAAAACAGAGGAGGTGGTAGACAGTGACAGGACAAACTTCAAGGACTTTATTGATGACATTAGGGAGAAGTACCCATGGGGGGTGAATGAATTTATAACAGTGAACTACTATGATTCAGTAAACAAAAACTATCCTCAAGTGTGCTCAGACCAATGTATGCCAGAAATGTTTGTCAAGAATGCCACCACCAAGGAAATATCTATGTTGATTCAAGTTCATAGCAACAATGAGCCAGTTGTAGCTCTTCCACTTGCTGATTGGCCAACACCTGAAAAGATAGCTAGTGGGACAGTACATAATGCGGCTGACATACATGAGGTGCCATCCACTCCATCTCTTGCAGTGCCATCTCAGGCTACTATATCTCAGCCTAGCAGTAGCACACAACTTGTTGATAAGTACTTAGCAAATCCATTTAAACAAAATGAACATGTTGGTGTTGATGATGAAGGCATCTACTCCGATGATGAAATTGTTGTGGTTACTGCTGATGGTGAGCATGAGCGTACTGATGTGCCTAAGGTGGTTAGTGAGGAGGGAGAGGAAGAAGAGGAGGAAGAAGAGGAGGGGGAGGAGGAAGGGGAAGGGGAGGAGGAAGGGGACGAAGAAGGGGAGGGGGAGGAAGAAGGGGAAGGGGAGGAAGAAGTGACAGGATCCAACCAACCGGAACCTTTGAGTGTGCTGATGCCACTACCAGCACTAGCACCTGACAAGTGCAAGGCCAAGGCCAAACCCAAGACAAAGACTAAAGCCAAGGTAGCCACTAAGAAAAACAAGGAAGATAGCACTGATGCTACACCTTTGGCTCAAATCAAGCGAAAAAAAGTTGTTCCCGTGACTCCAGATAGTCCAGCAATGGGGACAAGAAGCAAAAAGAAGAAATCTCTAGATTTTAATTTATACTAA
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| Protein seq | MTRKIEKASQCTPKSWVPEGMDPGTTYLLKIRLQGHHSRENFTYKTEEVVDSDRTNFKDFIDDIREKYPWGVNEFITVNYYDSVNKNYPQVCSDQCMPEMFVKNATTKEISMLIQVHSNNEPVVALPLADWPTPEKIASGTVHNAADIHEVPSTPSLAVPSQATISQPSSSTQLVDKYLANPFKQNEHVGVDDEGIYSDDEIVVVTADGEHERTDVPKVVSEEGEEEEEEEEEGEEEGEGEEEGDEEGEGEEEGEGEEEVTGSNQPEPLSVLMPLPALAPDKCKAKAKPKTKTKAKVATKKNKEDSTDATPLAQIKRKKVVPVTPDSPAMGTRSKKKKSLDFNLY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g23340 | SBH | 0.322596 | 0.237692 | 0.211096 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005610 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005510 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005460 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010710 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0209200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005670 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0223100 | RBH | 0.007305 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0005520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010560 | SBH | 0.315063 | 5.206709 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010720 | SBH | 10.306314 | 29.317385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010710 | SBH | 0.368426 | 0.587242 | 0.475312 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G010360 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010690 | SBH | 0.0 | 0.0 | 0.0 |
