Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_10g0007340 | OGI:06049890 | 6/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr10:10888819-10891924 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAATTAAATTTGCAGCATATATATGGATGAATATCACTCCAAATTTTGCAACACGGATTATCACCTTTCAGTAAGTTACACACATGCATAACACAATATTCAACTATTCATAACTATTGTTCACAAATGCATTCTGACATATCATCATGTAACTATTGTTCACCCATCAAGTAGCAGTATTCCTATATAGCAGTTATCCATCAGCTCAAATAGCTATTACATAAGAGTTCAAGTACATAGCAATAATTACATAATTTAGATGTAACTAAGGTTCTTGTAGGTGTATTGAGGTCCCAAAAACAAAACAAATCATCTCTTTTATGGTTCTTGTAGGTTCTTGATTTTTTTTACAGCACCTCTGCTAGCCCTTTTTATGGTTGCCTGCAAAATAATGGACAGAGTAAATGAAATGAATAATCATCAGTAGTGTACAGAGTAAACATATCTAGTGTACAGAGAACCACAGAAGAATATATATAGTCCATGGCAATTAGAATAGCATAACAGATAAATTTAGTGAAGAGCAAATGGCTAATTCAAAGACCCTGTCAGAAAGAAAATTGTAGCCTGTAAAACTACCAAGAGAGCACCTTCAAAGACCCTATTGATGAGTCAGTAATCAGTACATATATGAGAAAGGAAACAATAGAACTTCTATGTTGTAAAAAAGCACAAATGCATTAAGGATCTGATTTGCAACTAGTAGAGATACTGCCTTCGGAGTTAGTAAATCTGAAAGATGTTTTAGGCTACAAGCATTGGTTATCCTTTCTAACAAAACAATACCAATTGTTCAGCTTATAAAGTGCACACTAACTATTGGGTATATATCATGATGATGGATATAGATGCAAGGCATGGCAAATTAAGTCAGAGAGGCAATATATACACAAAAACATGTTGCATCATGTACAAATTAAGTACCTGCTCGCTGGTTAGTCTTTGCTGTCTTCTTGTGTACCTTCTTTTGTAGCTGTACATTATTAACACCTGGAACATTTTCTGCTTACATATGAAAAGAGATGATAAGAACTTGGTATATTCATATACCTTAATCTTATTAACGATACATGCAAATGTCGAATGAAATACCTTCACCAGCTAAGGGCATATTTCGAGGATCATTAGCATCAACACCTCCATTTTCTGCATTTGTTCGTGTCCTAGGCTATAATATTGGACCTCCAACTACTACTCCATCTGTCCCTGAGTTGTCTACAAGAAAAATTCTAAGTCAAACATTTTGCATGCATTACATGAAACAACAAATCTCAGCCATCTAATTATATGAATTGGTAAAAAAAATCAGATCATGCTTCATTAAAAACAAAGCAAAATCCTGAAACTTAATTGAACATCTAATCCTATAAATATCAGTTACTGAAATGTTTGTAATGCCGCACTTGTGACTTAGCAGTGTTAAGCTAGGAAAATTCAGAGCTAACATAGCAACTTGAGGCCAGGTCAATATTCAAGCTAACATAACATAAAAAAAATTATGTACTCCATCTAGCAGAAAGAGCAGCAACAGATGTTTTCTAGTATGCCCTTTTCAGAACTCAGGCTTCTGAAAAGTCAGAAGACAAAATTCAGGGAATGAGAAGTGATCCAAAAAGCAAAACAGATATTAATGCCTCTGTTAGGCCCAAAGGACATATAGAAACTTGTAGCCACACACAGCCTCTAACAAATAGCATGCATTTAGAATCAAAGTTCTTATCGGTGGCACTTCCAGAATTAGCATATGCCATGAAGACCACTATGCAGACAACAACAGATGTGCTAAATTAAGCATATATAGGATTCAACATGAACTCATGGTCACAGATCAATACCAAAATGAGTTCACCGTATTTTCAACCTTAATCTTAATTAACTGCAGCCAGACTGAACTTACCTCATATATGTGTTTGCAGAGTATAAGCGGATTATGAGTTTATAACTGCAGGAATACAAACTTAGAAATGCAGAGGTGTATACATCTGCAATATGTAATTAAACACAACACCAGCGGCTGCTAGGTTTTCTCAGTTCTGGATGGTTTTATCGTTTATATTTACCAGCACACAGTTTAGACAAAAAAGCACCCATTGTATTATAAAAAACAGAGCGAAACTCTGGAACTTTACTGAATATCTAATCCTACAAATATGAGAGCAATATATTTCCGGGGCACATGCATCATGAGGTCTGTTGAACATCAAGCAGAGTGAACTAGGAGGAATCTTATGATTTACTAGTGAAGGTCATGATACTTAACCTTAGCAGCTTAAGAATCTTATGATTTGTTCTAATTCTTTATACCACAAAGGGTGCAAAAGTTTCTATGGAAAGCAGTTAGAAACAACTACAGTCCATACTATACTGGATAGTTACATGATCCTTTTCTGAATTCTTTGATCATAAAGTATGAGTTCCAAGATACAGGACTAAACAGAGGAAACTACCCATCATATAGTATGAGTTTCTGAATTCTTTGTATCAAAACTTGAAAGGAAAGGGCCGAAGAAATCAAAGGCAAAAGGGGAAAAACTGCAAGAGAAATGCAGTCCATCAGTATTGATAATCACTACCCATTCAGCAACAACAAGCAGAGTGAACTAGGAGACCTCGTCGGCGACCGCGTCGAATGTCGTCCTGCCCCTGGACCTGCGCACGCACAAGTCCGACGCCCTCGCTTCCTCCTCCTCCTCTACCCGGCACACACCACCACCTGCAACCAACACCAACCCCAACACCCAAGTCAATCCCCCAGATCTGGACGGGCGCCCCCCAAACCCTAGCCCGTACAAACCTGGGCGGGCGCGAGGTCGACTCCGGCAGCGCGGTGGATGGGGAGAGAGGAGCGAGGTGGCGGCACGCCGCGGCGGAGGAGGAGGCCGCGCGCCGCGGCGGTGGATTTGGCGGAGGAGGCGGTGCGCGGTGGAAGGGGGAGAAATGGCGGCGCGCGGTGCGAGCCTAGGGTTTTCCTTTTTGGGGTGGATTTTCTTTTCGGCGTGGTTTTTTTTTGCGCGGATTTTTTTGCGCTTCTTTTTTTATTTTACTGCGCACCGATCACCTTGCTCTATCCTAACCGTGGGATCAACATCCAACGGACGAAACAT
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| CDS seq | ATGTTTCGTCCGTTGGATGTTGATCCCACGGTTAGGATAGAGCAAGGTGATCGAAAATCCACCCCAAAAAGGAAAACCCTAGGCTCGCACCGCGCGCCGCCATTTCTCCCCCTTCCACCGCGCACCGCCTCCTCCGCCAAATCCACCGCCGCGGCGCGCGGCCTCCTCCTCCGCCGCGGCGTGCCGCCACCTCGCTCCTCTCTCCCCATCCACCGCGCTGCCGGAGTCGACCTCGCGCCCGCCCAGGTTTGTGGTGGTGTGTGCCGGGTAGAGGAGGAGGAGGAAGCGAGGGCGTCGGACTTGTGCGTGCGCAGGTCCAGGGGCAGGACGACATTCGACGCGGTCGCCGACGAGCCTAGGACACGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTCGAAATATGCCCTTAGCTGGTGAAGAAAATGTTCCAGGTGTTAATAATGTACAGCTACAAAAGAAGGTACACAAGAAGACAGCAAAGACTAACCAGCGAGCAGGCAACCATAAAAAGGGCTAG
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| Protein seq | MFRPLDVDPTVRIEQGDRKSTPKRKTLGSHRAPPFLPLPPRTASSAKSTAAARGLLLRRGVPPPRSSLPIHRAAGVDLAPAQVCGGVCRVEEEEEARASDLCVRRSRGRTTFDAVADEPRTRTNAENGGVDANDPRNMPLAGEENVPGVNNVQLQKKVHKKTAKTNQRAGNHKKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0007340 | OsARC_10g0007340.01 | Chr10 | 10888819 | 10891924 | - | NAM | ||
| CDS seq | ATGTTTCGTCCGTTGGATGTTGATCCCACGGTTAGGATAGAGCAAGGTGATCGAAAATCCACCCCAAAAAGGAAAACCCTAGGCTCGCACCGCGCGCCGCCATTTCTCCCCCTTCCACCGCGCACCGCCTCCTCCGCCAAATCCACCGCCGCGGCGCGCGGCCTCCTCCTCCGCCGCGGCGTGCCGCCACCTCGCTCCTCTCTCCCCATCCACCGCGCTGCCGGAGTCGACCTCGCGCCCGCCCAGGTTTGTGGTGGTGTGTGCCGGGTAGAGGAGGAGGAGGAAGCGAGGGCGTCGGACTTGTGCGTGCGCAGGTCCAGGGGCAGGACGACATTCGACGCGGTCGCCGACGAGCCTAGGACACGAACAAATGCAGAAAATGGAGGTGTTGATGCTAATGATCCTCGAAATATGCCCTTAGCTGGTGAAGAAAATGTTCCAGGTGTTAATAATGTACAGCTACAAAAGAAGGTACACAAGAAGACAGCAAAGACTAACCAGCGAGCAGGCAACCATAAAAAGGGCTAG
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| Protein seq | MFRPLDVDPTVRIEQGDRKSTPKRKTLGSHRAPPFLPLPPRTASSAKSTAAARGLLLRRGVPPPRSSLPIHRAAGVDLAPAQVCGGVCRVEEEEEARASDLCVRRSRGRTTFDAVADEPRTRTNAENGGVDANDPRNMPLAGEENVPGVNNVQLQKKVHKKTAKTNQRAGNHKKG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_10g0007340 | OsARC_10g0007340.02 | Chr10 | 10888912 | 10891460 | - | IsoSeq | ||
| CDS seq | GGACGACATTCGACGCGGTCGCCGACGAGACAACTCAGGGACAGATGGAGTAGTAGTTGGAGGTCCAATATTATA |
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| Protein seq | GRHSTRSPTRQLRDRWSSSWRSNII |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 10889988 | 10891430 | - | OsARC_10g0007340.02 | OsARC_10g0007340.01,OsARC_10g0007340.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.829532 | 0.713892 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g40415 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021830 | RBH | 2.317216 | 28.982933 | 32.997223 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0202100 | SBH | 4.9090835 | 18.8816225 | 33.4783345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011770 | SBH | 0.735818 | 0.344803 | 3.361411 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
