Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_09g0008330 | OGI:04014620 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr09:13745222-13745914 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTTCCTACTACCAGAAGTCTCACCGGGAACGTTACTCTGCTTGTTGATCTTCGATGGTGGAGGGGCAACTGTCTTGTCAACTGTAACGGGTAGGATCTTCTTGCCCGTGGGGTTACCGAGCGGTGATTTGTCGATGGGCCTCCAGATTGGAGCAATACCAGGTGCATTGCTAGAACTGACAACAGTTGGGCGACCCGGTGCTGACAACACTTGCTGCGGGTGCTGACGAAGGAGCGTACCGCCTCTTTGTAGCTGTAGCGAGCTGTTGTTCTCCTGGCATTGCTTACCCTGCTGGCGTTGGTGTTGTAGGCTTGAAACGATTGCCGGTGGAACAACGCGACCTTTGACGGTGCCCTTGACGATAATCCGTTGGGGCGGAGGTTGCACATTCAGGTGTCGTTTGGTGTCGTGGGCAGTGCTGGTAACTTGTGAATCACGACGAACTGCCTTTGCTGCTCTTGGAAGAGGACAATCACTGAAACGATGTCCTGGCTTACGACAGTTGCGACAGAATCGACTTGCTTGGTCTTGGGGTGCAGGCTTCTGATTATGCACTTTGGCAGCTGAAACGGGAACAAGCAGAGGCTTATGAACATCCTTGGTGACGTTGCTTCTTCCATGGTTGGCTTCCACTGGAGCTGGAGTTAGAGAAAGAGCAGAAGGATTGTGACCGCTGTTGTCGATTGTCAT
More
|
||||||||||
| CDS seq | ATGACAATCGACAACAGCGGTCACAATCCTTCTGCTCTTTCTCTAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGCCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCAAGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATCGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCACGACACCAAACGACACCTGAATGTGCAACCTCCGCCCCAACGGATTATCGTCAAGGGCACCGTCAAAGGTCGCGTTGTTCCACCGGCAATCGTTTCAAGCCTACAACACCAACGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCGGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCGGGTCGCCCAACTGTTGTCAGTTCTAGCAATGCACCTGGTATTGCTCCAATCTGGAGGCCCATCGACAAATCACCGCTCGGTAACCCCACGGGCAAGAAGATCCTACCCGTTACAGTTGACAAGACAGTTGCCCCTCCACCATCGAAGATCAACAAGCAGAGTAACGTTCCCGGTGAGACTTCTGGTAGTAGGAACTAA
More
|
||||||||||
| Protein seq | MTIDNSGHNPSALSLTPAPVEANHGRSNVTKDVHKPLLVPVSAAKVHNQKPAPQDQASRFCRNCRKPGHRFSDCPLPRAAKAVRRDSQVTSTAHDTKRHLNVQPPPQRIIVKGTVKGRVVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQHPQQVLSAPGRPTVVSSSNAPGIAPIWRPIDKSPLGNPTGKKILPVTVDKTVAPPPSKINKQSNVPGETSGSRN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0008330 | OsARC_09g0008330.01 | Chr09 | 13745222 | 13745914 | - | NAM | ||
| CDS seq | ATGACAATCGACAACAGCGGTCACAATCCTTCTGCTCTTTCTCTAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGCCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCCAAGACCAAGCAAGTCGATTCTGTCGCAACTGTCGTAAGCCAGGACATCGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCACGACACCAAACGACACCTGAATGTGCAACCTCCGCCCCAACGGATTATCGTCAAGGGCACCGTCAAAGGTCGCGTTGTTCCACCGGCAATCGTTTCAAGCCTACAACACCAACGCCAGCAGGGTAAGCAATGCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGCGGTACGCTCCTTCGTCAGCACCCGCAGCAAGTGTTGTCAGCACCGGGTCGCCCAACTGTTGTCAGTTCTAGCAATGCACCTGGTATTGCTCCAATCTGGAGGCCCATCGACAAATCACCGCTCGGTAACCCCACGGGCAAGAAGATCCTACCCGTTACAGTTGACAAGACAGTTGCCCCTCCACCATCGAAGATCAACAAGCAGAGTAACGTTCCCGGTGAGACTTCTGGTAGTAGGAACTAA
More
|
|||||||
| Protein seq | MTIDNSGHNPSALSLTPAPVEANHGRSNVTKDVHKPLLVPVSAAKVHNQKPAPQDQASRFCRNCRKPGHRFSDCPLPRAAKAVRRDSQVTSTAHDTKRHLNVQPPPQRIIVKGTVKGRVVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQHPQQVLSAPGRPTVVSSSNAPGIAPIWRPIDKSPLGNPTGKKILPVTVDKTVAPPPSKINKQSNVPGETSGSRN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g17170 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001290 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010870 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0186400 | SBH | 0 | 0.005682 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010910 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0094900 | SBH | 0 | 0.0062165 | 0.011218 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010620 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011260 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008520 | RBH | 0.0 | 0.0 | 0.0 |
