Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_09g0005130 | OGI:09025990 | 11/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr09:9578341-9580154 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGCTGATCAGTTGACCTGGCAGTAGTTGACTTGAGACGAAGATGAACACAGGCCTAATAAGAGCGTCAATACTTCTAAGATGTGCCACACTTCAATTCCTTGCGAGCTGAAACTGAAGCTAAGGTTGAAGCCATGGGATATTGCTTCAAATTTTGAAGTTAATGAAGAAGCCAAAGTTTCTTGTTCAGTGAGAAGAACATTTCTGTCAGAGTTATTCACAAGGTAACTAACTAGTAATCCCCATTCTTGCTATTCTTTGAATGCTGCAAGAGTGTGTTGTTTCGATTGCCTTGAAAGAAACGAATTTACAGCTCCTTTATGTCTAGATATAGTTATCTGCTAGCTAGAACAGAGCACGAGATTACTAGTTAGCAGAAAAGAGTACTGTTACATGAGCAAATTCTTAACACACACTCCATGGGCCATGGCTTAGGGTCTCAGACACTCACAGTGTCTTATCACCAATTAGGTACATGAGCAAAGATTTGATTTAACCTTTGAGATACATTAATTCGTGCAAATTGCTATGAAAAATTAAAAAAATATTTTATAACTTAGCTTGTGTTGTATTGTAGCTTAAGACACAATTCGTATAAGTAGAACAAAAGAGATGCCATTATAAAATTAAAAAATAGTGTTGAACAACATGGGAGCAAATGCCGCACAAATTTAGAGTGTACTGGTGTAATTTTGCCAAAACAGTTTGCCCATATTCCTGAGCACTTCCTTTCTAAAAGTTTCATAAAATCGCCATCTGCAGAACGAAGAGAAGGATATCTTTGAATATATCTTAGTGGGATATTATGGAGGCAGCAATTGTATCAGGGATCACCAAAGAGGTTATCACGTCACTGAAAACTTCAGCCGTTAATGAGATAGCTAAATTGGTGTGTGTCAAAAAGGAGATCAAGAACCTCACCGTAACATTTGACGATATCTGTGCTCAAATAAGAGGCGCAGACCAGATTGTTGCACACTCTGAAGCAACAAACTACAGGCTCAAGCTGCTGAGAGAATATGCCTATGAGGCAGAAAACATCATCGATCTCTTCAGTATTGAACTTGGGGGAATGCAAGAACCACGACTGCAGGTCAGAAACATATCATCCTTCCCATGCACTCCTCTTCTCTTATGCCCCGTTTAGTTCTCAAAACAAAAAATTTCACGCTGTCATATTGAATACTTGAAACTTGCATGGAATATTAAATATAGAAAAAAAACAATTACACAGATTACATGTAAATTGCGAGATGGATCTTTTAAGTCTAATTGCGCCATGATTTGACAATGTGGTGCTACAGTAAATATTTGCTAATGACAGATTAATTAAGCTTAATAAATTTGTCTCGTATTTTTCTAGCGGAATATGTAATTTGTTTTGTTATTAAACTACGTTTAATACTTCAAATGTGTGTCCGTATATCCGATGTGATAACCAAACCTAAAAATTTTCCCCAACTAAATAAGGCCTTACTCTCTTGGGTTGATATATTATGCGAAAAGAACAACATACTTGAAACTTGAATTGACCCTGGAGCGTAACTTTAGAGAGCATTTAAACTATTCACCCAATGATGAAAATGGCATTGTACCCAAGCCCCTAGATTGACCATGGTATTTTACCTAAACCCATTTAACTACATATACAATGATGGATTCAACCGAATCCACTCTTTTGTGATGGTACATATACAATTTTCCCACCCTTAAACCCAATTAAAAGTGGATTTGTGAAGAACCCTTTCCACCTCATTGTCACTGGTGAGAAAGAGGGGAGAGATAGAGGAGGAGAGGAAGGAGGAGGAAGAATAG
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| CDS seq | ATGGAGGCAGCAATTGTATCAGGGATCACCAAAGAGGTTATCACGTCACTGAAAACTTCAGCCGTTAATGAGATAGCTAAATTGGTGTGTGTCAAAAAGGAGATCAAGAACCTCACCGTAACATTTGACGATATCTGTGCTCAAATAAGAGGCGCAGACCAGATTGTTGCACACTCTGAAGCAACAAACTACAGGCTCAAGCTGCTGAGAGAATATGCCTATGAGGCAGAAAACATCATCGATCTCTTCAAGGAGGAGAGGAAGGAGGAGGAAGAATAG |
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| Protein seq | MEAAIVSGITKEVITSLKTSAVNEIAKLVCVKKEIKNLTVTFDDICAQIRGADQIVAHSEATNYRLKLLREYAYEAENIIDLFKEERKEEEE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0005130 | OsARC_09g0005130.01 | Chr09 | 9578341 | 9580154 | + | NAM | ||
| CDS seq | ATGGAGGCAGCAATTGTATCAGGGATCACCAAAGAGGTTATCACGTCACTGAAAACTTCAGCCGTTAATGAGATAGCTAAATTGGTGTGTGTCAAAAAGGAGATCAAGAACCTCACCGTAACATTTGACGATATCTGTGCTCAAATAAGAGGCGCAGACCAGATTGTTGCACACTCTGAAGCAACAAACTACAGGCTCAAGCTGCTGAGAGAATATGCCTATGAGGCAGAAAACATCATCGATCTCTTCAAGGAGGAGAGGAAGGAGGAGGAAGAATAG
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| Protein seq | MEAAIVSGITKEVITSLKTSAVNEIAKLVCVKKEIKNLTVTFDDICAQIRGADQIVAHSEATNYRLKLLREYAYEAENIIDLFKEERKEEEE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.149492 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005110 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005140 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005330 | RBH | 0.521009 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005340 | RBH | 1.920798 | 0.000000 | 1.583539 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0152000 | SBH | 0.9551855 | 3.626676 | 1.7830705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005500 | RBH | 0.0 | 0.293333 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0135000 | SBH | 0.968477 | 1.6807265 | 3.170157 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005370 | SBH | 0.000000 | 0.107920 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005290 | SBH | 0.211786 | 4.398188 | 1.022133 |
