Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_09g0003330 | OGI:09016880 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr09:6425742-6431539 | ||||||||
| Gene Symbol | OSK4, OSK13, OSK5, OSK12 | ||||||||||
| DNA seq | CTACATCTCATAGGCCCAGGCGTTCTCGTTACGGACCTCGGCCTCCTCCTCCGGCGTGAAGTCGTTCTCGATCCCAAATACCTTCCTGACCTGCTCCGGCATCATGTCTTTGATGAAGTCCGCCGCGCGCTGGCATGTCAGCTCCAGCAGGCACGGCATGTTCAGGAAGTTGGCGGCATTGATCAGGCCGAACAACTTCTTCCTGTCGATGTTGACGAACTCAGCGTCGAACCTCCTAAGCTCCTCCTCCCCGCTAGCTTTCGCGGCGGCGGCGGCGGCGTGCTTGTTGCAGTACTCGACCACCTTGGCGAGGATGTCGGAGGCGACGTTGGCGAGAGGGATGGCGCCGTTGGTGGCGCAGTCATCCTCGATCATGTTACCCAACGTCTTGGACAGGCTCGCCGCCGCCTCCGACAGCTCGAATTTCACACCGTCCGAGCTGACCAGCAGGATCATCTTCTTGCCGTCGGCGGCAACGTCTGCTGCTGCTGCCGATGCCATCTCGGTGGCGCGCTTGCTGAACAAAGGCGTGAACTTCTGATCGATCAGATGAGTGCGCCCTAGCTTGTTGATCACGAACCTGTTTGCGTTTCTCTGCAACTGGATGGTTTGGAAATTGTTAGTTTTGGCGGTCTGTATATATGGATGAAGCCAGAGATTGACAAACTCCGAGACGGAGTCTGTTTTAATCTGTTGAAGTAAATCCGAGTCTAACTGGGTTTCTGATCTTTCGCGTTTCGTGTTTGGATCAGGGCGAGGTGGTCTGTTTTTATTGCGTGAAGAAATTATTACTCTGATGCGGTCATGCGCAGTGCGATCGAATTCAATCCAATATTTTCAAATCATTTTCGGTCATTTTTGCGTTAATTCGTCTATGAGATTAAAATAGGAGGAATTGCAAATCTGACCGTACTTTAAGAACTAACTATCAATTTAATTTTTGAGTAAATTGTATTAGCGGTACATAAACTTATCAGGTGGGTGCAATTTAGTGTGTGAACATGTAAAATGCTCGTTTTGGTGTATAAACTTGTCTGATACATGCAAACTAAGGCTAAAATGGCACGACACGACCGATTTTTCTATGTTGAACATTATAAATTATAAATTAGTAGATGAGTAAATGACTGCGTGCACATAGTAGTAGAAATATTATATTTATAAACTTAGTTTCCACTTTATCTTTATTTGTTTCTATCCCTTGCATTATTACTCGGTTTTTGATTTATGTAATCATTATGCCTTATTATATGTTTATCCTTCTTAGTCACATGTTTACATAGAGTTTAAATCAACAACAAAATCAACAAGATTAACCTTGCCGTGCAATTTTGACCTTGTTCGCACGCACCAAACAAGTTTGTGCACCAAAACGAGCGTTTTACAAGTTCATGTACTAGATTGTACCCATCTGACAAGTTCGCGTACTGCTGATGCAATTTACTCTTAATTTTTTTAAAGCCACATTGATCGTTTGACTCCTACAAACCGAAGATATGATCTGACTATTTTGTTAAAGCCATATATATAACGGTGTTAACTGAATCCTAAAATACCACTTTTGCCCATATTTCTTCAAAGCTTTTAGTTAGTTTGGCCTAATTATTGAATGGAGGAAATACTAAGAAAGATTTTTCACAAATTGTGCACTTTGTGTAGATTTTATAGATTTCCGACAAATTTGATTTAGATTTGTTATATTCTTCATTGGAGTCATCGTCGTCAATTCGTGCCAAGCAACAGCTAAAAAGAAATCCATGTATAAACTCATTACGTATGGATGAATAGTAGCGCTTAAATATAAGGAAGTTATTCTTTTTTTAATAATAGATATTGTTAGAATAGGTGTCGAATATACTAGTCCTATTTAGTTACAGTTAGACTTAGAGTTGTAATAGGTGTTAGGGGATACGTGGAGTTAGAGTCGAACTCTGTAACCCGACATCTCTCTTAAATAGAGAGGGGGGCATCACAATGTAACCATGGTAACTACAATAGCGTAGACACGCAGGGAGATGATGGCGGCATGGCCATGGACTCGTAGCGGCTAGGAGCTATATTGGTTGGGGAGGAGCGCCCATAATCAGAGCTTCGGGGATGTAGGCTTCGGCTGAACATCGTTAACAAATATCGTGTGTTCCTGTGTCGTCATTTGGTTTGTCTTGGGTGATCAATGACTGAAGCGATCGGGAAGGTTACTCGTCGTTCCGCTATATCGACTAACTTCTATAACAAGTGGTATCAAAGCAGAAGGTTTTAGCATTGAATCAGGAAGACATGTGGAGGAGGAAACACGAGGTGGGATCGCGCATCGACAGGAGATCATCAGTCGTGGCGATCGACAGGAGATCATCAGTCGTGGCGATGAGATCGATGGCGACGACCTCGCTCGCGATCAGACCGGCAATGGCGGAACGTGACTGGAAGACGAGGCCGGACGTGGCCGAAGGCGACCGGAGAGATCGGAGGGGTAGCGCCATGGACAGCGCGCCCGACGCACGCGGCGAACGCGGATCTGCGGCGGCAGGGAGGCCACTGACGGAAGGGCGAAACCGGCGAGCGTGGCGCGGCGCGGCGGACGTGCAGGGCCGTGACGACGGGGTCGTGGACGGTGAACACGAGGGTTGCGACTGCGGTGCGTGCAGGGGCACGGACGTCGTGCATGGAGGCACGACATACATGCATACGATGGTTATCAAGAGAGCAGAACAAATGTTTGGTACAGGTGCAGAGGTTAGGCGAGGAAGCAGGGAGGTATTGCTAGGCTGTTGGGTTCGGAACGGACTTGAATCCAAGCAGTAGTGTAATTAGGAGTCAGACACGGCTAGCATGCATGGACCAAATCTGATGTGGCCACGAGTGACACCTAGTTAAATTGGAAGGATTAAGACGGTAGAGATCCAACGAGCAATCAGCAAAAGACTCAAGCTTCGAATCGATAGAATTTCAGCACAAACCGAAAAGGACTTGAGCTTGCGTTTAACAGATCGGTGGAGCAGCTGAATGGCGGTAAAGTTCTTCAGGCAGGGAGAGGTGGCACAGGCTCCATTTGGGAGCAGCTGCTATGGGCTCTAGCAGAGAAGACAGGCCGACGTACGGCACAGTTCCAGGAGGCACAGATCTGCTTCGGCGAGAAGTGATCAGACGCGTGCTTGTTCTGATCAACGGGGTTCTGCAGTTCTGTGGTTGTTTGGTTTTTTTTGGTTCGCATGGCCAGACCGAGTAAATTGACTTACCTGCATGCAAGAAGTGATTAGTAGAGCAATTAAGTTTGTGCATGGCCATGGTCACGTGGATCATTAAATGCATGACTGTGCATTACTATGACAAGGTGTCACATGAATAGCTAGCAACATGCAGAGCTTGTGCGTTGGTGTCGCAGGCCATTGAGCAATGCATGGAGATCAAAGCAAGCAACGGACTTCATCAGGGGAGAATTGATATATCCATACAATGGACGAGATGGCATGAGCTAACTCGGTTGCGTTGGCATGGATAGGAGATCATATTTACCTGGAGTCCAGAACTTGATGATTGGTGCAAAGGGTTGGTTTGGCGGCGTGGCTCACGGGCACAAGACGGAAGGTATGGTGCAGCTTTGTGGTGATCAAGGTGATGCGGTGAGTATACGTCTCGGGAGAAGGTGCGTGAGGTGTGCATGTATGACGGTTAAACTGGGTCGGCAGGGTGGTCAGACCGACGGAATGGTTAGACTGCGGAGTTTGGACGGTTAGACCGGGTTCAACGGACGTGTGGTTCGTTGCAGGAACTTGTTAACGGATCTAGAAGAAGGACAGGAAGGTTCTACAGATGGATAGTTTGCAAGTGCGAAGGACGAGTAAACTAGCGGCAACAGGCTAGTCAGGTCGCATATGGAATTATTTGGTAGAAACATGATATATCTGGGACTTGATGAGGAGTTGAGATATATAGAGTTAGTCTAGCTAGAACTGAAGAAAAGATTCCGGGCAACAGCGGGTCAAATATCGTTGATGGGGTCGATGATACTGTTTGGCAGTGCATGATATATCCAAGATATGCAGGTTGGCATTATGGGGATATATGAAATCTGCGTCACTGAAGAGGAAGAGCAAGCGCTATGATGTTAATTTCTTCAAGTGATTCAAGGCAACGGTAAATTTTCTCAAAGTATCATAGGTTCAGTCTACGGATGAGGGAAAGCGGGGATGTTGGATTTATTAGCTCGGTTCATAAGACAACAAGCTAGGAAGAAAGGGTTCTCTTCAAGTCTGGTGAGTTTGATTTATCTATTTGGTGATGACGCAGGTTATCTGGCCATGGATTAGATCAAGTCAAATTTGAGATGGAAGATGGAGGTGAACATGGTCTTCGGGGAGTCTATGATGTTACAGCTAGGAAGAAATCCAATTTCGCTTGGCAAGACGACTGAGATGATAGGTGAGAAGGTGGAGCACTGTTGCGGGTGGAATCAAGAGAAAGAAATTACAGGGATAGCGGAGTCTCTTGAAGACGGTGGGTCTGGCGTAGACTCGTCGGACGGCTTGCGGTGAAGCTATAAAGAAGATAACCCAAGTCTGGAGGAATGGTGGATCGGCATGGTGATTCTACTGCTTCTGGGTAGCGTATATTCGCCAAGGTGGAGTTTGTTAGAATAGGTGTCGAATATACTAGTCCTATTTGGTTACAGTTGGACTTGGAGTTGTAATAGGTGTTAGGGGGTGGAGTTAGAGTCCAACTCTGTAACCCGGCATCTCTCTTAAATAGAGAGGGGCGCACCACAATGTAACCATGGCGACTACAATGTAGCGTAGACACGCAGGGAGATGATGACGGCGTGGCCATGGACTCGTAGCGGCTAGGAGCTATATTGGTTGGGGAGGAGCGCCCATAATCAGAGCCTCGGGGATGTAGGCTTTGGCTAAATCTCGTTAACAAATATCGTGTGTTCCTGTGTCGTCATCTGGTTTGTCTTGGGTGATCAATGATTGAAGCGATCGGGAAGGTTAGTCGTCGTTCCGCTATATCGACTAACTTCTATAACAGATATAATCTAATGGTGTAAAATAATGGGTCCACCAATTTAAGTAAAAATCAACGATGAGATTAGATATCGTCACGTGGTGGCTTAAGAGCGTTTGCTGAAGTGCCACGTGACAGCTTAAGAGCGCTTATAGGATGTTTAATGGATTTTTAGTAGATAATAATAGATAGATAATAGATAGATAGATGTGGACAATGCTAAAAAGTTTTATATTATGAAACGGATGGAGTATAAAACAGCGGGAATAGTAAATAACACGTGACAAATGCCTAAAACTCTAGTTCTCGAAAGCCCATTCGTTCTCCTTGCGGATCTCCTCCTCCTCCTCTGGTGTGAAGTCGTTGACGATCCCGAACGTGTCCCTGATCTCCTGTACCGTCTTGCCCTTGATCAAGTCAGCCATGTGTTGGCACGCAAGATCAAGTAGAGACGGCACGTTCAAGTAGTTGGCGGCCAAGATCAGGCCGAACAGCATCGTGTTGTCGACATCGATGAAGCTGGCATCGAAGCTCTTCAGCTCCTGATCCTTCACGGCGATGTCCTCGGCCGTGGCGGCGGCGGCGTGTTTCTTGCAGTACTCGAGCACCTTCGCGAGGACGTTGGAGGCGACGTTGGGGAGAGGGACGCCGTTCTCCGTGCATTCGTCCTCGATCATGTTGTTCACTAGCTTCGACATGCTCGCCTCTGCCTCCGTCACCTGGAAGTGCTGCCCGTCCGAGCTGATCAGAAGGATTTTGCTGTCGCCGGCGTCGGCTCCCTCCTTTACTGCCGCCAT
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| CDS seq | ATGGCGGCAGTAAAGGAGGGAGCCGACGCCGGCGACAGCAAAATCCTTCTGATCAGCTCGGACGGGCAGCACTTCCAGGTGACGGAGGCAGAGGCGAGCATGTCGAAGCTAGTGAACAACATGATCGAGGACGAATGCACGGAGAACGGCGTCCCTCTCCCCAACGTCGCCTCCAACGTCCTCGCGAAGGTGCTCGAGTACTGCAAGAAACACGCCGCCGCCGCCACGGCCGAGGACATCGCCGTGAAGGATCAGGAGCTGAAGAGCTTCGATGCCAGCTTCATCGATGTCGACAACACGATGCTGTTCGGCCTGATCTTGGCCGCCAACTACTTGAACGTGCCGTCTCTACTTGATCTTGCGTGCCAACACATGGCTGACTTGATCAAGGGCAAGACGACCGCCAAAACTAACAATTTCCAAACCATCCAGTTGCAGAGAAACGCAAACAGGTTCGTGATCAACAAGCTAGGGCGCACTCATCTGATCGATCAGAAGTTCACGCCTTTGTTCAGCAAGCGCGCCACCGAGATGGCATCGGCAGCAGCAGCAGACGTTGCCGCCGACGGCAAGAAGATGATCCTGCTGGTCAGCTCGGACGGTGTGAAATTCGAGCTGTCGGAGGCGGCGGCGAGCCTGTCCAAGACGTTGGGTAACATGATCGAGGATGACTGCGCCACCAACGGCGCCATCCCTCTCGCCAACGTCGCCTCCGACATCCTCGCCAAGGTGGTCGAGTACTGCAACAAGCACGCCGCCGCCGCCGCCGCGAAAGCTAGCGGGGAGGAGGAGCTTAGGAGGTTCGACGCTGAGTTCGTCAACATCGACAGGAAGAAGTTGTTCGGCCTGATCAATGCCGCCAACTTCCTGAACATGCCGTGCCTGCTGGAGCTGACATGCCAGCGCGCGGCGGACTTCATCAAAGACATGATGCCGGAGCAGGTCAGGAAGGTATTTGGGATCGAGAACGACTTCACGCCGGAGGAGGAGGCCGAGGTCCGTAACGAGAACGCCTGGGCCTATGAGATGTAG
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| Protein seq | MAAVKEGADAGDSKILLISSDGQHFQVTEAEASMSKLVNNMIEDECTENGVPLPNVASNVLAKVLEYCKKHAAAATAEDIAVKDQELKSFDASFIDVDNTMLFGLILAANYLNVPSLLDLACQHMADLIKGKTTAKTNNFQTIQLQRNANRFVINKLGRTHLIDQKFTPLFSKRATEMASAAAADVAADGKKMILLVSSDGVKFELSEAAASLSKTLGNMIEDDCATNGAIPLANVASDILAKVVEYCNKHAAAAAAKASGEEELRRFDAEFVNIDRKKLFGLINAANFLNMPCLLELTCQRAADFIKDMMPEQVRKVFGIENDFTPEEEAEVRNENAWAYEM |
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| Function | SKP1-like protein 5 [UniProtKB/Swiss-Prot:Q6H4D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0003330 | OsARC_09g0003330.01 | Chr09 | 6425742 | 6431539 | - | NAM | ||
| CDS seq | ATGGCGGCAGTAAAGGAGGGAGCCGACGCCGGCGACAGCAAAATCCTTCTGATCAGCTCGGACGGGCAGCACTTCCAGGTGACGGAGGCAGAGGCGAGCATGTCGAAGCTAGTGAACAACATGATCGAGGACGAATGCACGGAGAACGGCGTCCCTCTCCCCAACGTCGCCTCCAACGTCCTCGCGAAGGTGCTCGAGTACTGCAAGAAACACGCCGCCGCCGCCACGGCCGAGGACATCGCCGTGAAGGATCAGGAGCTGAAGAGCTTCGATGCCAGCTTCATCGATGTCGACAACACGATGCTGTTCGGCCTGATCTTGGCCGCCAACTACTTGAACGTGCCGTCTCTACTTGATCTTGCGTGCCAACACATGGCTGACTTGATCAAGGGCAAGACGACCGCCAAAACTAACAATTTCCAAACCATCCAGTTGCAGAGAAACGCAAACAGGTTCGTGATCAACAAGCTAGGGCGCACTCATCTGATCGATCAGAAGTTCACGCCTTTGTTCAGCAAGCGCGCCACCGAGATGGCATCGGCAGCAGCAGCAGACGTTGCCGCCGACGGCAAGAAGATGATCCTGCTGGTCAGCTCGGACGGTGTGAAATTCGAGCTGTCGGAGGCGGCGGCGAGCCTGTCCAAGACGTTGGGTAACATGATCGAGGATGACTGCGCCACCAACGGCGCCATCCCTCTCGCCAACGTCGCCTCCGACATCCTCGCCAAGGTGGTCGAGTACTGCAACAAGCACGCCGCCGCCGCCGCCGCGAAAGCTAGCGGGGAGGAGGAGCTTAGGAGGTTCGACGCTGAGTTCGTCAACATCGACAGGAAGAAGTTGTTCGGCCTGATCAATGCCGCCAACTTCCTGAACATGCCGTGCCTGCTGGAGCTGACATGCCAGCGCGCGGCGGACTTCATCAAAGACATGATGCCGGAGCAGGTCAGGAAGGTATTTGGGATCGAGAACGACTTCACGCCGGAGGAGGAGGCCGAGGTCCGTAACGAGAACGCCTGGGCCTATGAGATGTAG
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| Protein seq | MAAVKEGADAGDSKILLISSDGQHFQVTEAEASMSKLVNNMIEDECTENGVPLPNVASNVLAKVLEYCKKHAAAATAEDIAVKDQELKSFDASFIDVDNTMLFGLILAANYLNVPSLLDLACQHMADLIKGKTTAKTNNFQTIQLQRNANRFVINKLGRTHLIDQKFTPLFSKRATEMASAAAADVAADGKKMILLVSSDGVKFELSEAAASLSKTLGNMIEDDCATNGAIPLANVASDILAKVVEYCNKHAAAAAAKASGEEELRRFDAEFVNIDRKKLFGLINAANFLNMPCLLELTCQRAADFIKDMMPEQVRKVFGIENDFTPEEEAEVRNENAWAYEM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0274800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g10260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0274800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003380 | SBH | 0.000000 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003420 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0003350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003510 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0094300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0093800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003450 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003570 | SBH | 0.0 | 0.0 | 0.412472 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003480 | RBH | 0.0 | 0.0 | 0.0 |
