Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_09g0001340 | OGI:09006630 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr09:2889803-2895970 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACATCTCTACTGAACTCATCGATCGTGACAAAAGTTGTAAACAATCGTGGGATTTCAAGCTGCTGTACATCTCTGTAGCGGAATATACAAATTACAAACATTCACATTCACAAGGAACCCATCATCCAGCAACAAGCAGCAGCATATTACAGGACACGAAACTGATGTTTTTGTTTCGGGATTGAAAATGCATGGTTGACAACCTGGTTAGATCATCAATGCAAGTCTGCCAATCAATTGACGTTATATTTTCCCATCTGCCAGACTCATATTTAGGGCCATGATAGATCGACCTCTCAATTTTAGCAGTAGAAATCGTGGTTATATATACACGCAGAAACAACACCGACAAGTTGCAATCGAAAAACTAACTGATTGAGGGCAAGGCAGGTGGAGTGTAGCCAAGACCAGAATCCCCGCCAAAGGAACCAGGTTCAACATGTCTAACCTGGCCGTGCTGACGGATATGGCGAAGGAGCCTAGCCAGAAAAGCATTGTTGCAGATTGTAGAACTATCACAGACAAGTGCGACATGACGGCGTGCCCTTGTGATGGCCACATTCATGCGCCTGTTGTCGCCAAGGAATCCTACAGCTCCCAAAGTGTTTGAACGAACCTAACAGGATTGAATAGAAATATCTTAGAGCCTTCATAGAAGTATTAAAGTTGGGTTAAGAATGACCTGCAACTTTTATTGACATGAGATTATATGGTTCAACACGGCATTTGAAGTACCACGGTCACCTTACAGCAAACCAAGAAGGACTACCCTATAAAGACAGCAAAGGAAGTGTGTACCATTGATATGACCACGGCATCTGCCTCCCTCCCTTGGAAGCTATCTATAGTTGAAACCTCAACACCAGAAGCCTCTGGATAATCTTCTAGCCTGTCTCTTAATAGTTGTACTTGCGCAATGTAAGGTGACTGGACGGCAATCGCGGTTGGAGAGACACCTGCACAAATTGTTTTCAGCAGTCCATTCATCAATAATCTGTGCAGCATTAGGAATAAAACAACTACGGGCAAATAAAAAATTAGGATACAAAGTGTGCTGCAAGTTGAACACAAAATCTTAGTGTGGTGTAATTAATTAAAGGAAAACAGGCACATACCACATTGTACAAGGTTCAAAACATGCTGTGAAACTACATCTGCCTCGCCATTGTTATAAAAAGATCCTGTACCAGCAGGGTCTAAATGCTCCTCACAGTCAATATTCAAACTTCCGTACGGCATACGAGTGTCAAGTAAAAGAAAGGCACACCGAGTTATCCAAGTTTCCTGAAAGACGGTAATTTTAATCCATTATCAATATGATGCATACATTAATCAACCATAAAATATAATCAATCTTTTAAAACAAATGCAATTGTTTCTGGATAACAATTCGGACCTCCACACCTTTAATAGATGCATTTGTACCTACCTATTGCAATGGATCTCAAATACATAAAACTTAAGTTATAAGGTTAAAAATGCCAAAATAATCATCCCTGAATACAAAAAACTGCATACATGATTTGCATCAAATAAATCAGCCTCTGCATATACATTCATAGAGGTTGTGTTCCTGTACCAAATTATTCCTACAAACAACACATATGTATACGTAGATCCAGAGAGGAAACAACATTTGAGAGACTCCGTTATAAAGCAAGCCATGACCAACATCCATTTTAGTATAATTATTATGGCCTAGAACATTTCGTAGTTACAGCCATGCAAAATTGTAATCAACATATGTCTCATATATCATCTCTTAGCTTCCATTTGGCAAGACTTATTTACACAAAAGGGGATTAAGCTCCAATTATATTGAAAGCAGTTCACATTATGTTGAATTCAAAACGGAGGAAGTCTTAGTATTGCCTACACTTTAAGTCATATAGCAACAGAAAATCTCCATACAATTTATACCCTTCATCTTCATGCAAACTTAATTGTGGTTCATGAAAATAAAATTGAAGTATGCTCATGAACAAGGGCATCACACAAACCATGTTCATTTAGGCATGAAATCAACATGAAAAATTATGTAAAAATGGAACCAAACCCCAATTTAAACTATCAACAAGACCAGATACATTTTATGTAGAATAAAAAAATGAAATCCCTAAGAAACTAATATTAAAACTCAAAAGGCATTGAAAATAAAAGGGCATTTCATCTTCATGCTTTTCGGCAACTGGGATGAGAAAAACTACCCCCTGCAAAATTCTGATAGGTTTATGGAAACAGGAACAGAGAGCATCAGTACCTTGATAAATGGGTAATCAGCAAGAAGATGAGAAGCAACGGATGGGGAGGATTTGAGAAAACCATCATACATCTCGTTAGATGCCCAACTGGCAATTGAATCATGCATTCTGTATTGTGTTGTTAATTTCGTTGTCAGTAGTTCATTATGCAACGATGAAGCTCTTTCGAGTAAAGACATTGCTAGTCCACCTTGCATAGCCTCTCTTGATAAAACAACAGGTGCAAGCTGCCGTTGATCACCAGCAAGAATGCATCTTTTTCCTTGTAAGATAGGGATCCAGCATGAGGGTTCGATTGCTTGTCCTGCTTCATCAATAATTACTAAGTCAAAGCAACCAATCCTCCTCACAAGTGGGTCAGCTGCCCCAATATTAGTTGATAGGACAACATCAGCATTTGAAAGGACCTCTCTGATTATTTCCTTTTCCTTCTTTTTAAAGTTCTTCCCAAGCTGCTTCAACAGTTGACGTATACCTGCGGCTAATGTATCATCCTGTATGCAATGCTTCAAGTCCTTTCTCAAGTCGGATTTTTTCCTCTCGAACTCTTCTGTGAACTTCTGAAGTCTTCTGTTCACAAGCTCTCCCAAGGACCTTGAAGCAACAGATGGAGATATCCTAGCAGGATTTCCAACTCGTACTGTGTCCAGTCCAGTATCTGACAACTTCTCCACCATGTTATCAACTGCTGCATTGCTTGGAGCAGTTACGAGAACGCGTTCACCCTTTCGGACAGCACATGCAATGAGATAACTAAGCAAACCAGTCTTGCCCGTGCCAGGAGGTCCTTGGATTATTAGGACAGGCCTTTTGTTGTTCAAGCCTAGTGTGATAGCTTTTAACTGGGAGGCATCAAAGTCATATTTGTTCTTTTTCAATAGCTCATCATCATGTATTGTTGATTCTCCCCAATCAGCCAGATTATTCTGCTCCATCATCATCATGTCTTCCTTGTCCCCAAACAGAGTGGCTACTACTCCAATGGAAGAATTCTTTTTCTGTAAACCTTTCCTTTGAAGAAGCATCAGTGCTTCACAATTTCGCTGCCAAATCATACACAAACCAATAGGCTAAACGTTCAAGCTTTGTTCATCCTTTTAGTAAAACTTGAAACAAAATCAACATATTTTCAACCTTGTAGGAAAGAATGAAATAATCTGTGATCACAGAACACCTAACATTAGCCAGTCCAGTTTTCAACAAAAAAGTCCTGTCCTGATCACTTCTTCCATGCAAATATTTATGTTAGAAGCCAGTGTTTAGTTTCATCAGATTATGCAAATTTCAAATTAAATTAAAAAATCCATAGTTTTCTACTCAGAAACTAGACCTAGCCCCAATTGCTAATAGACAATCATTTGTAACAAAATTCATTATACCACACCAACGTTAGCATGACACTCGCACAAGAAAATAAATACTGGATTGACACAAACAAAATTTAATTCAGACACAGCGGTAACCACTTACTTTTGGGGATACTGATTTTAATTTTTAAAACAGCAAGATCAGTAATAAACTAATTTATTTTTACATCTCAATTGTCTTCATACCTAGCATTCCTACATAACATATTTAGGTTTGATTTATCATATGCAGAAAGTTCGGAACTTTAAGAATCCTTACCACTCCTTTTATAAACATGTAAGTTAGGTACCTAGGTTGCATATCATATATATACATATGGCTCAAATTTTCGAAAGGGTAATGTTGCATAGTATCAAGTATTAACAATTAAATGGTTTTGTTAGGCTAGGTGCCTAGGTGCCTAAATTGCATTACCTCTTGAAAAAAGATTACTAACAATTAAATGGTATTGTATGGGGAAGAAATTACTTTTAGCCTTTTAGGTCCAAACAGACTGATACTTCTGTGACATGGCTCAGAATGCTAACACCCATCTCATGCATCTAAAGGAAGGGATGCATGGGACTAGGGGTTACATCAACTAAATTGCATTACCTCATATGTAAGTGCGTCAGCCAATGCCTGAATCCTGTCAATCCGCACATTTTTCCCAAAAAGCTTGGAGAACGTAGGATCACCACGGCGGGATTTCAGTGTCACGGTAATGCTGCAACCATCCTCACCAAGATTATATATAAAGCCTTGCATGCAAGATGTGGTAATTTCCCCCCGGTTATCACATGTCCTGATACAAACCATATCCCCAGGAGAGAGTGTGGTTGGAGGCAATCTATGGTTATCTTTCACTCTAAATAGGACCAGATGCTGGCCATCCAACCCTGCACAAAACAAGATTTAAAACAAAGTAATAAATAGGAGAAACTTTAGTTCGTATAGCAAAATCGAGTATCAAACCTCAAGTTAGTCTTATCTGCATATGCATATTTGCATGCATAAATATAAGCAGCCATATCTTACTACGGTACTAACCAAAAAGAAGCAGATAAAAATCACTATCCTGGCAGCACATATTTAGAATTACTAACCAACGAACAATATAAAAAGAGTATAATGCACTGACCAGTTGAACTGCTGATAACATTCAAATTGCAAATGGTATCGCACTGCTCTTGCTGTGACTGCCCATGAGTGACTAAGTACTCTACTGGTTTGAGTGGCTTCTTTGAGTTCCCATCCATCACAGGGGTGGCATTCAGTTCTTCTTGTGTAAACTCCAGCTCCGCATCTCGTTCTATATGTAGAAGGTCTGACATTTTCTTGACAAAGTCTTCAATTTTGGTCTGCATCAACCTTGTCTTATCAAGACTTATGCCAAGAGTACTGTGCGTAGTAGGAGCTTTAGGTTTGCGGGCAGCTGCTCGATGCTGAGCTGAGTTAGCCAATTCTTTCAGAAGCATCCAAGATTGAGTGGTGCGCCAATCAGAAATAAGACCCTGGTTCTGTTGTTTCAACAGAACATCACGGAGTTCCCTTTGAAAGTGGTCAAAGAGGGTAGGATAGTGAGTAGAGGCCTTGAGGCAGAGCGCCTCCTGTCCCTTGGGCATGGGAATTGCTGATAGATAAGGCTGTGCAAGCATCACAAATCCGAGGTTGTCTTCAGATGATCCACCATCCAGTAAGAATGTTGCTCCATCGTTCTGCATTTCTGTGGAAGCATATTTTATAGCCATTGAGTGCATACCCTGCTTTAGCCATTGTACCACGCACCGGCCCAACTCCTTCTTCCCAATGGGGTCGCCACTCTCATAAAGAGTATTTACCCTAATGGACACTTCCTCCGCAGATGGAACACACTCCCCTTCATCTTTTGCTGTCTCCTTCCTCTTTCTCCCCCTCCTCCTCCTCCTTCCTTCCTTTCTTGTACCGTTATCAGTGATGCCATGAGGGAGAGAAGAACGGGAATCAGCCGGAAGTAATGTTTGTTCTCTAGGTCCTGCAGATGAAACTAACAGGAGATGACTTTGCTGTGAACAAGTGTTAGGAGCTGAACTAGAGCTGCAGGGAAAAGATGGGAATGGAAGCAACTTCAGCTCTCTCCTCCTTAGGTGCAGTGCAGTGGCACGAGAAGAAAAGAACCTGAAAGACAGAACATGAGAAGACATGCTCAGCCCAGGAAAGCTAGATATGGAGGCGAGAGGAAGACGAGAAGAAATCACTACCAGTAAGTGAACTTAAAAGGAAAATATTGACAGATACAGCTACATGGGCATATGAGCTTAGGACTCAGGATTTCTCACTGATATTTTGTAAGCTTGATAGCCATGCTGGTGACTTGCAGAGTTGTGGTGAAGGCAAATGCTACGTTACCTTCAATCCATACATATACTAGCACTGGTGTTTACCACTTCCGTAGCTGTGCAGTCTCTCTGTGTTGTACACGTTTTCTCCAGCTACACCTTGCTCCATAGTCTCTGAAGCTCCTCACAGTTCAGTTCTAACCCACCAATTGCCATGCCCTTTTTGATTTTTCACTTATCCC
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| CDS seq | ATGGCTATCAAGCTTACAAAATATCAGTTCTTTTCTTCTCGTGCCACTGCACTGCACCTAAGGAGGAGAGAGCTGAAGTTGCTTCCATTCCCATCTTTTCCCTGCAGCTCTAGTTCAGCTCCTAACACTTGTTCACAGCAAAGTCATCTCCTGTTAGTTTCATCTGCAGGACCTAGAGAACAAACATTACTTCCGGCTGATTCCCGTTCTTCTCTCCCTCATGGCATCACTGATAACGGTACAAGAAAGGAAGGAAGGAGGAGGAGGAGGGGGAGAAAGAGGAAGGAGACAGCAAAAGATGAAGGGGAGTGTGTTCCATCTGCGGAGGAAGTGTCCATTAGGGTAAATACTCTTTATGAGAGTGGCGACCCCATTGGGAAGAAGGAGTTGGGCCGGTGCGTGGTACAATGGCTAAAGCAGGGTATGCACTCAATGGCTATAAAATATGCTTCCACAGAAATGCAGAACGATGGAGCAACATTCTTACTGGATGGTGGATCATCTGAAGACAACCTCGGATTTGTGATGCTTGCACAGCCTTATCTATCAGCAATTCCCATGCCCAAGGGACAGGAGGCGCTCTGCCTCAAGGCCTCTACTCACTATCCTACCCTCTTTGACCACTTTCAAAGGGAACTCCGTGATGTTCTGTTGAAACAACAGAACCAGGGTCTTATTTCTGATTGGCGCACCACTCAATCTTGGATGCTTCTGAAAGAATTGGCTAACTCAGCTCAGCATCGAGCAGCTGCCCGCAAACCTAAAGCTCCTACTACGCACAGTACTCTTGGCATAAGTCTTGATAAGACAAGGTTGATGCAGACCAAAATTGAAGACTTTGTCAAGAAAATGTCAGACCTTCTACATATAGAACGAGATGCGGAGCTGGAGTTTACACAAGAAGAACTGAATGCCACCCCTGTGATGGATGGGAACTCAAAGAAGCCACTCAAACCAGTAGAGTACTTAGTCACTCATGGGCAGTCACAGCAAGAGCAGTGCGATACCATTTGCAATTTGAATGTTATCAGCAGTTCAACTGGGTTGGATGGCCAGCATCTGGTCCTATTTAGAGTGAAAGATAACCATAGATTGCCTCCAACCACACTCTCTCCTGGGGATATGGTTTGTATCAGGACATGTGATAACCGGGGGGAAATTACCACATCTTGCATGCAAGGCTTTATATATAATCTTGGTGAGGATGGTTGCAGCATTACCGTGACACTGAAATCCCGCCGTGGTGATCCTACGTTCTCCAAGCTTTTTGGGAAAAATGTGCGGATTGACAGGATTCAGGCATTGGCTGACGCACTTACATATGAGCGAAATTGTGAAGCACTGATGCTTCTTCAAAGGAAAGGTTTACAGAAAAAGAATTCTTCCATTGGAGTAGTAGCCACTCTGTTTGGGGACAAGGAAGACATGATGATGATGGAGCAGAATAATCTGGCTGATTGGGGAGAATCAACAATACATGATGATGAGCTATTGAAAAAGAACAAATATGACTTTGATGCCTCCCAGTTAAAAGCTATCACACTAGGCTTGAACAACAAAAGGCCTGTCCTAATAATCCAAGGACCTCCTGGCACGGGCAAGACTGGTTTGCTTAGTTATCTCATTGCATGTGCTGTCCGAAAGGGTGAACGCGTTCTCGTAACTGCTCCAAGCAATGCAGCAGTTGATAACATGGTGGAGAAGTTGTCAGATACTGGACTGGACACAGTACGAGTTGGAAATCCTGCTAGGATATCTCCATCTGTTGCTTCAAGGTCCTTGGGAGAGCTTGTGAACAGAAGACTTCAGAAGTTCACAGAAGAGTTCGAGAGGAAAAAATCCGACTTGAGAAAGGACTTGAAGCATTGCATACAGGATGATACATTAGCCGCAGGTATACGTCAACTGTTGAAGCAGCTTGGGAAGAACTTTAAAAAGAAGGAAAAGGAAATAATCAGAGAGGTCCTTTCAAATGCTGATGTTGTCCTATCAACTAATATTGGGGCAGCTGACCCACTTGTGAGGAGGATTGGTTGCTTTGACTTAGTAATTATTGATGAAGCAGGACAAGCAATCGAACCCTCATGCTGGATCCCTATCTTACAAGGAAAAAGATGCATTCTTGCTGGTGATCAACGGCAGCTTGCACCTGTTGTTTTATCAAGAGAGGCTATGCAAGGTGGACTAGCAATGTCTTTACTCGAAAGAGCTTCATCGTTGCATAATGAACTACTGACAACGAAATTAACAACACAATACAGAATGCATGATTCAATTGCCAGTTGGGCATCTAACGAGATGTATGATGGTTTTCTCAAATCCTCCCCATCCGTTGCTTCTCATCTTCTTGCTGATTACCCATTTATCAAGGAAACTTGGATAACTCGGTGTGCCTTTCTTTTACTTGACACTCGTATGCCGTACGGAAGTTTGAATATTGACTGTGAGGAGCATTTAGACCCTGCTGGTACAGGATCTTTTTATAACAATGGCGAGGCAGATGTAGTTTCACAGCATGTTTTGAACCTTGTACAATGTGGTGTCTCTCCAACCGCGATTGCCGTCCAGTCACCTTACATTGCGCAAGTACAACTATTAAGAGACAGGCTAGAAGATTATCCAGAGGCTTCTGGTGTTGAGGTTTCAACTATAGATAGCTTCCAAGGGAGGGAGGCAGATGCCGTGGTCATATCAATGGTTCGTTCAAACACTTTGGGAGCTGTAGGATTCCTTGGCGACAACAGGCGCATGAATGTGGCCATCACAAGGGCACGCCGTCATGTCGCACTTGTCTGTGATAGTTCTACAATCTGCAACAATGCTTTTCTGGCTAGGCTCCTTCGCCATATCCGTCAGCACGGCCAGGTTAGACATGTTGAACCTGGTTCCTTTGGCGGGGATTCTGGTCTTGGCTACACTCCACCTGCCTTGCCCTCAATCAGTTAG
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| Protein seq | MAIKLTKYQFFSSRATALHLRRRELKLLPFPSFPCSSSSAPNTCSQQSHLLLVSSAGPREQTLLPADSRSSLPHGITDNGTRKEGRRRRRGRKRKETAKDEGECVPSAEEVSIRVNTLYESGDPIGKKELGRCVVQWLKQGMHSMAIKYASTEMQNDGATFLLDGGSSEDNLGFVMLAQPYLSAIPMPKGQEALCLKASTHYPTLFDHFQRELRDVLLKQQNQGLISDWRTTQSWMLLKELANSAQHRAAARKPKAPTTHSTLGISLDKTRLMQTKIEDFVKKMSDLLHIERDAELEFTQEELNATPVMDGNSKKPLKPVEYLVTHGQSQQEQCDTICNLNVISSSTGLDGQHLVLFRVKDNHRLPPTTLSPGDMVCIRTCDNRGEITTSCMQGFIYNLGEDGCSITVTLKSRRGDPTFSKLFGKNVRIDRIQALADALTYERNCEALMLLQRKGLQKKNSSIGVVATLFGDKEDMMMMEQNNLADWGESTIHDDELLKKNKYDFDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVTAPSNAAVDNMVEKLSDTGLDTVRVGNPARISPSVASRSLGELVNRRLQKFTEEFERKKSDLRKDLKHCIQDDTLAAGIRQLLKQLGKNFKKKEKEIIREVLSNADVVLSTNIGAADPLVRRIGCFDLVIIDEAGQAIEPSCWIPILQGKRCILAGDQRQLAPVVLSREAMQGGLAMSLLERASSLHNELLTTKLTTQYRMHDSIASWASNEMYDGFLKSSPSVASHLLADYPFIKETWITRCAFLLLDTRMPYGSLNIDCEEHLDPAGTGSFYNNGEADVVSQHVLNLVQCGVSPTAIAVQSPYIAQVQLLRDRLEDYPEASGVEVSTIDSFQGREADAVVISMVRSNTLGAVGFLGDNRRMNVAITRARRHVALVCDSSTICNNAFLARLLRHIRQHGQVRHVEPGSFGGDSGLGYTPPALPSIS |
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| Function | DNA-binding protein SMUBP-2 [UniProtKB/Swiss-Prot:P40694] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0001340 | OsARC_09g0001340.02 | Chr09 | 2892245 | 2895222 | - | NAM | ||
| CDS seq | ATGCACTCAATGGCTATAAAATATGCTTCCACAGAAATGCAGAACGATGGAGCAACATTCTTACTGGATGGTGGATCATCTGAAGACAACCTCGGATTTGTGATGCTTGCACAGCCTTATCTATCAGCAATTCCCATGCCCAAGGGACAGGAGGCGCTCTGCCTCAAGGCCTCTACTCACTATCCTACCCTCTTTGACCACTTTCAAAGGGAACTCCGTGATGTTCTGTTGAAACAACAGAACCAGGGTCTTATTTCTGATTGGCGCACCACTCAATCTTGGATGCTTCTGAAAGAATTGGCTAACTCAGCTCAGCATCGAGCAGCTGCCCGCAAACCTAAAGCTCCTACTACGCACAGTACTCTTGGCATAAGTCTTGATAAGACAAGGTTGATGCAGACCAAAATTGAAGACTTTGTCAAGAAAATGTCAGACCTTCTACATATAGAACGAGATGCGGAGCTGGAGTTTACACAAGAAGAACTGAATGCCACCCCTGTGATGGATGGGAACTCAAAGAAGCCACTCAAACCAGTAGAGTACTTAGTCACTCATGGGCAGTCACAGCAAGAGCAGTGCGATACCATTTGCAATTTGAATGTTATCAGCAGTTCAACTGGGTTGGATGGCCAGCATCTGGTCCTATTTAGAGTGAAAGATAACCATAGATTGCCTCCAACCACACTCTCTCCTGGGGATATGGTTTGTATCAGGACATGTGATAACCGGGGGGAAATTACCACATCTTGCATGCAAGGCTTTATATATAATCTTGGTGAGGATGGTTGCAGCATTACCGTGACACTGAAATCCCGCCGTGGTGATCCTACGTTCTCCAAGCTTTTTGGGAAAAATGTGCGGATTGACAGGATTCAGGCATTGGCTGACGCACTTACATATGAGCGAAATTGTGAAGCACTGATGCTTCTTCAAAGGAAAGGTTTACAGAAAAAGAATTCTTCCATTGGAGTAGTAGCCACTCTGTTTGGGGACAAGGAAGACATGATGATGATGGAGCAGAATAATCTGGCTGATTGGGGAGAATCAACAATACATGATGATGAGCTATTGAAAAAGAACAAATATGACTTTGATGCCTCCCAGTTAAAAGCTATCACACTAGGCTTGAACAACAAAAGGCCTGTCCTAATAATCCAAGGACCTCCTGGCACGGGCAAGACTGGTTTGCTTAGTTATCTCATTGCATGTGCTGTCCGAAAGGGTGAACGCGTTCTCGTAACTGCTCCAAGCAATGCAGCAGTTGATAACATGGTGGAGAAGTTGTCAGATACTGGACTGGACACAGTACGAGTTGGAAATCCTGCTAGGATATCTCCATCTGTTGCTTCAAGGTCCTTGGGAGAGCTTGTGAACAGAAGACTTCAGAAGTTCACAGAAGAGTTCGAGAGGAAAAAATCCGACTTGAGAAAGGACTTGAAGCATTGCATACAGGATGATACATTAGCCGCAGGTATACGTCAACTGTTGAAGCAGCTTGGGAAGAACTTTAAAAAGAAGGAAAAGGAAATAATCAGAGAGGTCCTTTCAAATGCTGATGTTGTCCTATCAACTAATATTGGGGCAGCTGACCCACTTGTGAGGAGGATTGGTTGCTTTGACTTAGACAAGCAATCGAACCCTCATGCTGGATCCCTATCTTACAAGGAAAAAGATGCATTCTTGCTGGTGATCAACGGCAGCTTGCACCTGTTGTTTTATCAAGAGAGGCTATGCAAGGTGGACTAG
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| Protein seq | MHSMAIKYASTEMQNDGATFLLDGGSSEDNLGFVMLAQPYLSAIPMPKGQEALCLKASTHYPTLFDHFQRELRDVLLKQQNQGLISDWRTTQSWMLLKELANSAQHRAAARKPKAPTTHSTLGISLDKTRLMQTKIEDFVKKMSDLLHIERDAELEFTQEELNATPVMDGNSKKPLKPVEYLVTHGQSQQEQCDTICNLNVISSSTGLDGQHLVLFRVKDNHRLPPTTLSPGDMVCIRTCDNRGEITTSCMQGFIYNLGEDGCSITVTLKSRRGDPTFSKLFGKNVRIDRIQALADALTYERNCEALMLLQRKGLQKKNSSIGVVATLFGDKEDMMMMEQNNLADWGESTIHDDELLKKNKYDFDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVTAPSNAAVDNMVEKLSDTGLDTVRVGNPARISPSVASRSLGELVNRRLQKFTEEFERKKSDLRKDLKHCIQDDTLAAGIRQLLKQLGKNFKKKEKEIIREVLSNADVVLSTNIGAADPLVRRIGCFDLDKQSNPHAGSLSYKEKDAFLLVINGSLHLLFYQERLCKVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_09g0001340 | OsARC_09g0001340.01 | Chr09 | 2889803 | 2895970 | - | NAM | ||
| CDS seq | ATGGCTATCAAGCTTACAAAATATCAGTTCTTTTCTTCTCGTGCCACTGCACTGCACCTAAGGAGGAGAGAGCTGAAGTTGCTTCCATTCCCATCTTTTCCCTGCAGCTCTAGTTCAGCTCCTAACACTTGTTCACAGCAAAGTCATCTCCTGTTAGTTTCATCTGCAGGACCTAGAGAACAAACATTACTTCCGGCTGATTCCCGTTCTTCTCTCCCTCATGGCATCACTGATAACGGTACAAGAAAGGAAGGAAGGAGGAGGAGGAGGGGGAGAAAGAGGAAGGAGACAGCAAAAGATGAAGGGGAGTGTGTTCCATCTGCGGAGGAAGTGTCCATTAGGGTAAATACTCTTTATGAGAGTGGCGACCCCATTGGGAAGAAGGAGTTGGGCCGGTGCGTGGTACAATGGCTAAAGCAGGGTATGCACTCAATGGCTATAAAATATGCTTCCACAGAAATGCAGAACGATGGAGCAACATTCTTACTGGATGGTGGATCATCTGAAGACAACCTCGGATTTGTGATGCTTGCACAGCCTTATCTATCAGCAATTCCCATGCCCAAGGGACAGGAGGCGCTCTGCCTCAAGGCCTCTACTCACTATCCTACCCTCTTTGACCACTTTCAAAGGGAACTCCGTGATGTTCTGTTGAAACAACAGAACCAGGGTCTTATTTCTGATTGGCGCACCACTCAATCTTGGATGCTTCTGAAAGAATTGGCTAACTCAGCTCAGCATCGAGCAGCTGCCCGCAAACCTAAAGCTCCTACTACGCACAGTACTCTTGGCATAAGTCTTGATAAGACAAGGTTGATGCAGACCAAAATTGAAGACTTTGTCAAGAAAATGTCAGACCTTCTACATATAGAACGAGATGCGGAGCTGGAGTTTACACAAGAAGAACTGAATGCCACCCCTGTGATGGATGGGAACTCAAAGAAGCCACTCAAACCAGTAGAGTACTTAGTCACTCATGGGCAGTCACAGCAAGAGCAGTGCGATACCATTTGCAATTTGAATGTTATCAGCAGTTCAACTGGGTTGGATGGCCAGCATCTGGTCCTATTTAGAGTGAAAGATAACCATAGATTGCCTCCAACCACACTCTCTCCTGGGGATATGGTTTGTATCAGGACATGTGATAACCGGGGGGAAATTACCACATCTTGCATGCAAGGCTTTATATATAATCTTGGTGAGGATGGTTGCAGCATTACCGTGACACTGAAATCCCGCCGTGGTGATCCTACGTTCTCCAAGCTTTTTGGGAAAAATGTGCGGATTGACAGGATTCAGGCATTGGCTGACGCACTTACATATGAGCGAAATTGTGAAGCACTGATGCTTCTTCAAAGGAAAGGTTTACAGAAAAAGAATTCTTCCATTGGAGTAGTAGCCACTCTGTTTGGGGACAAGGAAGACATGATGATGATGGAGCAGAATAATCTGGCTGATTGGGGAGAATCAACAATACATGATGATGAGCTATTGAAAAAGAACAAATATGACTTTGATGCCTCCCAGTTAAAAGCTATCACACTAGGCTTGAACAACAAAAGGCCTGTCCTAATAATCCAAGGACCTCCTGGCACGGGCAAGACTGGTTTGCTTAGTTATCTCATTGCATGTGCTGTCCGAAAGGGTGAACGCGTTCTCGTAACTGCTCCAAGCAATGCAGCAGTTGATAACATGGTGGAGAAGTTGTCAGATACTGGACTGGACACAGTACGAGTTGGAAATCCTGCTAGGATATCTCCATCTGTTGCTTCAAGGTCCTTGGGAGAGCTTGTGAACAGAAGACTTCAGAAGTTCACAGAAGAGTTCGAGAGGAAAAAATCCGACTTGAGAAAGGACTTGAAGCATTGCATACAGGATGATACATTAGCCGCAGGTATACGTCAACTGTTGAAGCAGCTTGGGAAGAACTTTAAAAAGAAGGAAAAGGAAATAATCAGAGAGGTCCTTTCAAATGCTGATGTTGTCCTATCAACTAATATTGGGGCAGCTGACCCACTTGTGAGGAGGATTGGTTGCTTTGACTTAGTAATTATTGATGAAGCAGGACAAGCAATCGAACCCTCATGCTGGATCCCTATCTTACAAGGAAAAAGATGCATTCTTGCTGGTGATCAACGGCAGCTTGCACCTGTTGTTTTATCAAGAGAGGCTATGCAAGGTGGACTAGCAATGTCTTTACTCGAAAGAGCTTCATCGTTGCATAATGAACTACTGACAACGAAATTAACAACACAATACAGAATGCATGATTCAATTGCCAGTTGGGCATCTAACGAGATGTATGATGGTTTTCTCAAATCCTCCCCATCCGTTGCTTCTCATCTTCTTGCTGATTACCCATTTATCAAGGAAACTTGGATAACTCGGTGTGCCTTTCTTTTACTTGACACTCGTATGCCGTACGGAAGTTTGAATATTGACTGTGAGGAGCATTTAGACCCTGCTGGTACAGGATCTTTTTATAACAATGGCGAGGCAGATGTAGTTTCACAGCATGTTTTGAACCTTGTACAATGTGGTGTCTCTCCAACCGCGATTGCCGTCCAGTCACCTTACATTGCGCAAGTACAACTATTAAGAGACAGGCTAGAAGATTATCCAGAGGCTTCTGGTGTTGAGGTTTCAACTATAGATAGCTTCCAAGGGAGGGAGGCAGATGCCGTGGTCATATCAATGGTTCGTTCAAACACTTTGGGAGCTGTAGGATTCCTTGGCGACAACAGGCGCATGAATGTGGCCATCACAAGGGCACGCCGTCATGTCGCACTTGTCTGTGATAGTTCTACAATCTGCAACAATGCTTTTCTGGCTAGGCTCCTTCGCCATATCCGTCAGCACGGCCAGGTTAGACATGTTGAACCTGGTTCCTTTGGCGGGGATTCTGGTCTTGGCTACACTCCACCTGCCTTGCCCTCAATCAGTTAG
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| Protein seq | MAIKLTKYQFFSSRATALHLRRRELKLLPFPSFPCSSSSAPNTCSQQSHLLLVSSAGPREQTLLPADSRSSLPHGITDNGTRKEGRRRRRGRKRKETAKDEGECVPSAEEVSIRVNTLYESGDPIGKKELGRCVVQWLKQGMHSMAIKYASTEMQNDGATFLLDGGSSEDNLGFVMLAQPYLSAIPMPKGQEALCLKASTHYPTLFDHFQRELRDVLLKQQNQGLISDWRTTQSWMLLKELANSAQHRAAARKPKAPTTHSTLGISLDKTRLMQTKIEDFVKKMSDLLHIERDAELEFTQEELNATPVMDGNSKKPLKPVEYLVTHGQSQQEQCDTICNLNVISSSTGLDGQHLVLFRVKDNHRLPPTTLSPGDMVCIRTCDNRGEITTSCMQGFIYNLGEDGCSITVTLKSRRGDPTFSKLFGKNVRIDRIQALADALTYERNCEALMLLQRKGLQKKNSSIGVVATLFGDKEDMMMMEQNNLADWGESTIHDDELLKKNKYDFDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVTAPSNAAVDNMVEKLSDTGLDTVRVGNPARISPSVASRSLGELVNRRLQKFTEEFERKKSDLRKDLKHCIQDDTLAAGIRQLLKQLGKNFKKKEKEIIREVLSNADVVLSTNIGAADPLVRRIGCFDLVIIDEAGQAIEPSCWIPILQGKRCILAGDQRQLAPVVLSREAMQGGLAMSLLERASSLHNELLTTKLTTQYRMHDSIASWASNEMYDGFLKSSPSVASHLLADYPFIKETWITRCAFLLLDTRMPYGSLNIDCEEHLDPAGTGSFYNNGEADVVSQHVLNLVQCGVSPTAIAVQSPYIAQVQLLRDRLEDYPEASGVEVSTIDSFQGREADAVVISMVRSNTLGAVGFLGDNRRMNVAITRARRHVALVCDSSTICNNAFLARLLRHIRQHGQVRHVEPGSFGGDSGLGYTPPALPSIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.903266 | 0.284931 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0130800 | RBH | 39.052601 | 20.519218 | 5.439079 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g04440 | RBH | 11.030986 | 9.014250 | 1.041970 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0130800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001450 | RBH | 2.674027 | 3.335674 | 11.000190 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001430 | RBH | 2.385545 | 4.118243 | 7.506771 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001460 | RBH | 4.696714 | 7.177604 | 18.625793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001520 | RBH | 71.768677 | 10.411531 | 22.742601 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0033500 | RBH | 16.7660805 | 36.0669765 | 37.22706 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001510 | RBH | 1.278538 | 0.254889 | 1.946836 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0045200 | RBH | 30.3479845 | 71.050106 | 38.011944 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001460 | RBH | 2.599065 | 0.417068 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001470 | RBH | 6.359878 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001570 | RBH | 34.441418 | 22.022106 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001460 | RBH | 3.071156 | 0.0 | 3.177739 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001490 | RBH | 1.530817 | 5.844650 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001540 | RBH | 3.008613 | 3.579425 | 3.202252 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0001500 | RBH | 6.941922 | 20.213181 | 7.176626 |
