Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0019580 | OGI:08068200 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:24569236-24570387 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTGGTACGGCGGCCGTGGCCGTGGTGCGCTCGCCGCCGCCGCCGCCGGCGGCGGCCATACCTCTTCATGCTGGCACGCTGACGCGTACACAGGTTGAGTCGTCGTCGTCGTCGTCGCCGTCGCCAGAGCTATGCCGCGCGGATGCAGCGGTGTCAAGTGATGGTGCTCCGGTGGCTCCGTTCGGCGCCGCCCGCGGTGTTCGTCAGCGTCGGCGCCGCTGCCGGAGACGGGCGCCGGCGCGTCGTCGTATTCCGCGGGGAGGCGGTGGAACGTGGGGCTGGCGAACGCGGCGGCGACGACGACGACGGTGGTGGCGGCGACGAGCGGGCCCGCCACGGCGCCTCCGACGATCTGGCCGTGTGGCCCCGCGAGAGATATCGAGAGGCCGCCGAGCGCGGCGCGTGGCGCCGCCGCGGCCATGGCGGGCGGGAGGAACGTCGCCGATATGGAGAGGATCTCGTACCGGCCGTGGAACACGACCACGGCGGCGGCGCCGCCGCCGCCGATCTCCGCCGCGGCGCCGGAAGGCAACGGGTGGCGGAGCGAGACGTTGGCGACGGCGCCCGTCCCGGCGAGCACGCAGATCCCGAGGCCACGGCGGCGCGCGTACCCCGCGAGCGCGCCGGCGACGTCCCCGCCGCCCGGGATCTCCAGCACGTGCGACCGCATCGCCGCCGCCGCCGCCGGCTCGGCCGCCGCCGCCTCACGCATGACGACCACCGGCGGCTTCGGCTTGTTCTTGGACCCCGGCGGCCGCCCCCTCCTCCTCTTACCCACCACCACCACCGCAGCAACACCCTCGCCGCCGCCGCCCGCCGTCGTCTCCTCCGCCGCGCCACCACCACCATCACGGCTGTCCACCTCGTCAGAGAAGCACTCCAGCTGCTGCTTCTTCTCGCCCATGGCGCCGCCGCCGACGACGAGCTTGCCATCGCCTTCTCCTCCTCCCAGCTGACTCCTCCTCTCCATACCTCCCTCACAAGCAGCAGCTAGCTACTCCAGCTTGGAGTGTGAGTGCAATAATAGCTAAGCTAGGAGGAGGGTCCCTGGCTGCTTTACCCTACCGGGAGAGATTTCTTGCCGGGAGAGGGAGCACGGCGAGGTGTAAGTGTAAGTGAAGCAAAGCTGGAGAGAGGAGAGACAGGAGGA
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| CDS seq | ATGGAGAGGAGGAGTCAGCTGGGAGGAGGAGAAGGCGATGGCAAGCTCGTCGTCGGCGGCGGCGCCATGGGCGAGAAGAAGCAGCAGCTGGAGTGCTTCTCTGACGAGGTGGACAGCCGTGATGGTGGTGGTGGCGCGGCGGAGGAGACGACGGCGGGCGGCGGCGGCGAGGGTGTTGCTGCGGTGGTGGTGGTGGGTAAGAGGAGGAGGGGGCGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCGGTGGTCGTCATGCGTGAGGCGGCGGCGGCCGAGCCGGCGGCGGCGGCGGCGATGCGGTCGCACGTGCTGGAGATCCCGGGCGGCGGGGACGTCGCCGGCGCGCTCGCGGGGTACGCGCGCCGCCGTGGCCTCGGGATCTGCGTGCTCGCCGGGACGGGCGCCGTCGCCAACGTCTCGCTCCGCCACCCGTTGCCTTCCGGCGCCGCGGCGGAGATCGGCGGCGGCGGCGCCGCCGCCGTGGTCGTGTTCCACGGCCGGTACGAGATCCTCTCCATATCGGCGACGTTCCTCCCGCCCGCCATGGCCGCGGCGGCGCCACGCGCCGCGCTCGGCGGCCTCTCGATATCTCTCGCGGGGCCACACGGCCAGATCGTCGGAGGCGCCGTGGCGGGCCCGCTCGTCGCCGCCACCACCGTCGTCGTCGTCGCCGCCGCGTTCGCCAGCCCCACGTTCCACCGCCTCCCCGCGGAATACGACGACGCGCCGGCGCCCGTCTCCGGCAGCGGCGCCGACGCTGACGAACACCGCGGGCGGCGCCGAACGGAGCCACCGGAGCACCATCACTTGACACCGCTGCATCCGCGCGGCATAGCTCTGGCGACGGCGACGACGACGACGACGACTCAACCTGTGTACGCGTCAGCGTGCCAGCATGAAGAGGTATGGCCGCCGCCGGCGGCGGCGGCGGCGAGCGCACCACGGCCACGGCCGCCGTACCAATAG
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| Protein seq | MERRSQLGGGEGDGKLVVGGGAMGEKKQQLECFSDEVDSRDGGGGAAEETTAGGGGEGVAAVVVVGKRRRGRPPGSKNKPKPPVVVMREAAAAEPAAAAAMRSHVLEIPGGGDVAGALAGYARRRGLGICVLAGTGAVANVSLRHPLPSGAAAEIGGGGAAAVVVFHGRYEILSISATFLPPAMAAAAPRAALGGLSISLAGPHGQIVGGAVAGPLVAATTVVVVAAAFASPTFHRLPAEYDDAPAPVSGSGADADEHRGRRRTEPPEHHHLTPLHPRGIALATATTTTTTQPVYASACQHEEVWPPPAAAAASAPRPRPPYQ |
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| Function | AT-hook motif nuclear-localized protein 17 [UniProtKB/Swiss-Prot:Q9LTA2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0019580 | OsARC_08g0019580.01 | Chr08 | 24569236 | 24570387 | - | NAM | ||
| CDS seq | ATGGAGAGGAGGAGTCAGCTGGGAGGAGGAGAAGGCGATGGCAAGCTCGTCGTCGGCGGCGGCGCCATGGGCGAGAAGAAGCAGCAGCTGGAGTGCTTCTCTGACGAGGTGGACAGCCGTGATGGTGGTGGTGGCGCGGCGGAGGAGACGACGGCGGGCGGCGGCGGCGAGGGTGTTGCTGCGGTGGTGGTGGTGGGTAAGAGGAGGAGGGGGCGGCCGCCGGGGTCCAAGAACAAGCCGAAGCCGCCGGTGGTCGTCATGCGTGAGGCGGCGGCGGCCGAGCCGGCGGCGGCGGCGGCGATGCGGTCGCACGTGCTGGAGATCCCGGGCGGCGGGGACGTCGCCGGCGCGCTCGCGGGGTACGCGCGCCGCCGTGGCCTCGGGATCTGCGTGCTCGCCGGGACGGGCGCCGTCGCCAACGTCTCGCTCCGCCACCCGTTGCCTTCCGGCGCCGCGGCGGAGATCGGCGGCGGCGGCGCCGCCGCCGTGGTCGTGTTCCACGGCCGGTACGAGATCCTCTCCATATCGGCGACGTTCCTCCCGCCCGCCATGGCCGCGGCGGCGCCACGCGCCGCGCTCGGCGGCCTCTCGATATCTCTCGCGGGGCCACACGGCCAGATCGTCGGAGGCGCCGTGGCGGGCCCGCTCGTCGCCGCCACCACCGTCGTCGTCGTCGCCGCCGCGTTCGCCAGCCCCACGTTCCACCGCCTCCCCGCGGAATACGACGACGCGCCGGCGCCCGTCTCCGGCAGCGGCGCCGACGCTGACGAACACCGCGGGCGGCGCCGAACGGAGCCACCGGAGCACCATCACTTGACACCGCTGCATCCGCGCGGCATAGCTCTGGCGACGGCGACGACGACGACGACGACTCAACCTGTGTACGCGTCAGCGTGCCAGCATGAAGAGGTATGGCCGCCGCCGGCGGCGGCGGCGGCGAGCGCACCACGGCCACGGCCGCCGTACCAATAG
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| Protein seq | MERRSQLGGGEGDGKLVVGGGAMGEKKQQLECFSDEVDSRDGGGGAAEETTAGGGGEGVAAVVVVGKRRRGRPPGSKNKPKPPVVVMREAAAAEPAAAAAMRSHVLEIPGGGDVAGALAGYARRRGLGICVLAGTGAVANVSLRHPLPSGAAAEIGGGGAAAVVVFHGRYEILSISATFLPPAMAAAAPRAALGGLSISLAGPHGQIVGGAVAGPLVAATTVVVVAAAFASPTFHRLPAEYDDAPAPVSGSGADADEHRGRRRTEPPEHHHLTPLHPRGIALATATTTTTTQPVYASACQHEEVWPPPAAAAASAPRPRPPYQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0478466 | RBH | 0.366033 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g37345 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0478466 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0019550 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0019470 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0019370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013300 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0019440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0375900 | RBH | 0.816619 | 1.1949165 | 5.200937 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0019360 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0395500 | RBH | 1.019644 | 5.149126 | 0.97466 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0018670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0018950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0018790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0019630 | RBH | 0.148879 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019180 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019320 | RBH | 0.0 | 0.0 | 0.0 |
