Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0017730 | OGI:08062990 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:22432755-22436560 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tggcatacacccctaacacccaagttagaagtattcttaggttcaaagacacctgtttcttcttcaaattctttacgcactgtgagatgttaactgcagcctgcacagcatcaccgctatgcattgtccccaggggatgttactccaggattttgtatgtacgctccatttttacaccgtgcctgtacatattgaaagcatgactggtttcttcaacttggattatcaaagtcatcgtaaaactccttccttcagttgcatcagatgagtacggaggctggactcctgtacctgaatcaacaccatgcaaagattgaattgatgttagtacattgcacagttaagtaaggcagatcatgttgtacaaatgaagtctggggtgtatgcaaggacaaagtatttctgcaaatggccagaactatggctactgatgcctactagaaattgtcagtttccaatcagataagaaccagatgttcatcccatcaaataaatccaaatcagacaaggcatgcaactcttgcaggacatgctacagggattgtggatatctatgctgccctctggctgtgtctgcagactgtttctggcaggttgaccaactaaagtggttggattaatgcagaaaacaagtcgagtaaccaacaactagttttccaaaggtgggtagctactgtggagaactaatggttagaagtgcaaatggctcggctcatgaaagctttgtgcaagggaagctcggtttggctcggctcgctacgagcaacgagctaaaactaaggctctgctcagctcgttaatgggctcaagcaggtctaggagaaatcaagcaacattttaacacatagaatgtgcaataaagtgatagatttcttcaatatgtcatcccaacacataaatagacaatatgacaatcaattttaccattttcaacaaataaatagctagaaaaggtacaaaattactgtatatgaccctattgtactgagccaaatgagcttgtgagcggctcgtgagccagcttaggcttggctcatttcaaaaatgagctaggaaggagcttgggcttgtcttgtttggctttcgagccgagctatgcgagcacgaaccaagcttgagcctgagtttattgtccaccctactaatgggggttttaaagtggaatgttctttcgaaagttcagacagcgattcataaatacctgtagttttgctgccgtagctaagagctctctacactcaccaagggcaaccttttcttgccttgccatgtctgaaagttcagaaaccaaagacgtcctaccttcaacctggtacacatatcctaattaatgttactaaaagcaacaaagacattgtatcctaataaattgcgggcaaattagagtatgtactaattttaaaagttttagtttatcaaacaatattctgaaaaaaaaattgaatgttagaacctgagctgctcctctttttttgaaaaagaaaaatatatggtacgtttatatctaacctttgataggaggtacaaaattgaggaactcaaagcttgcataacatcaaccgctgagcttatagaattcttaactgcaacagcatctgcctgttaaataacagtattgtcagcataccagacaaaccaagataagagtattcgatcaaaaaaggaacaagataagtgtaactgcaaatccaagatcatttgacattaagcaatgatggcttgatcacgtacctgtgctcctgatgtaactggaaggcgaagtgtgcatgcttgtaaagcttcaatagccccaatcaaagtactaccgttctctccttctagttccggccaatgttgaagataagcaatctgaatcacaacaatatggcgagaagtaacccaccaaggattttttttagatataaaaaaattgaaatgggctaaacaccccaaatcaccaaataaccgtactttaatcaaaatctgaaatttttcaatgaattcaataaatttcgaaaaaaaaaatcagggggcacaattaccaaaaaaatcactgaaagattaaaatttacagtacttcttccctgaatttgaaaaaatgtcagccaaatcagaagaagatttttccagagggacggtattacccaatcaccaactttttttttgttattttcagccccatatttaaaaaccacattttttttcaaattttgaatgacttcgaatcaaatttaaaggaagcatatttagaggaaaatttcaaccaagtacctgctcttttaaaacgtagtacagtttgagctcttgctgcaggagttgaacatcaattcttctgactgtaacagaatcccgcagctgcacgatacttttccacacactgtaaagaatactctgttttacatgggaggagagaaatactatattagttgaacattgcttgcccaatgaaaaaaataataataaagagaatgcacccactaagaaacaatggcttcatcaggcacaaacttgagcaaagcaattagagaacagacaggagcaaaaccaatatagcatacctctatgctactcttttggaaggttagtgtatcttctgaacgagcatatacaaactgccactgcaggcatctattatacagcagacgtaattggtgaatattctcaaactggcttgcactcttcttccctttcctcgcatcaactatatagttaaacacaggaggtgcaacgcctgattgacttgttgaacaacatcgtgatcggcaaggtgccgaaggccttgtcctcaaaggactttgaaaggctgtagaagcaggggatgcagctgacaagaccttgtttggtgacgacgagcgatgtagaacaggtgaagacagagtcctgctcgggcgagtagcagctttagagttttctgatgtctgtgaagaaacatcactaccagattctgtcttatcctctcttctgctctcatgtgtagccaatctctttgccaatccgttcaatggctgattcagaccattggctttgacttcagctggacaaatcctccttggtgaaagcccccttgtagggtttgatggagtaactgacctgataggcgtgttggcaacaccattgcttctcgaagttaagacggcagagccatggccacccatcattgccgccggccatcggtgttgctcaacgaccctcttgtttggagtctctgatggccgagcattctcacattggttgccaatgttcctccctctgagaggacttcttttcctctcagtctcggtcacgtttcttgcctgcaccttggtctggtcagaagatgagccatcagcaagcttgtgtctcttcttggcagaggttgccattgccatggactccttctgaagcaatggaggcacgctacgagctgatgcccacaagccatcagggggctttgtactggctgcacgacgagagatgccatgtacctcggtggctgccgcaacacgcaccggtgtcctgggcctcgacgcagcgccgccaccaccaccggacggcgtcgagctggaagaaggcgtggaagacctcctcctctcagctgactgtgctctgtttgtcgatgctgtgccttcagctgctgaagccctgctcagacttggagacgtgcatcgcctcaccgaggaagcagcagcctgtggcgccggcgtgccgccggacttgaacctggaggccacctccctcctccgacctgccggagcagcaatgttcttctccggtggcaccagcggctgccgcaaggcgcagtcgacggtacctgcggccttcctccccgctgtcttcacggcatccat
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| CDS seq | atggatgccgtgaagacagcggggaggaaggccgcaggtaccgtcgactgcgccttgcggcagccgctggtgccaccggagaagaacattgctgctccggcaggtcggaggagggaggtggcctccaggttcaagtccggcggcacgccggcgccacaggctgctgcttcctcggtgaggcgatgcacgtctccaagtctgagcagggcttcagcagctgaaggcacagcatcgacaaacagagcacagtcagctgagaggaggaggtcttccacgccttcttccagctcgacgccgtccggtggtggtggcggcgctgcgtcgaggcccaggacaccggtgcgtgttgcggcagccaccgaggtacatggcatctctcgtcgtgcagccagtacaaagccccctgatggcttgtgggcatcagctcgtagcgtgcctccattgcttcagaaggagtccatggcaatggcaacctctgccaagaagagacacaagcttgctgatggctcatcttctgaccagaccaaggtgcaggcaagaaacgtgaccgagactgagaggaaaagaagtcctctcagagggaggaacattggcaaccaatgtgagaatgctcggccatcagagactccaaacaagagggtcgttgagcaacaccgatggccggcggcaatgatgggtggccatggctctgccgtcttaacttcgagaagcaatggtgttgccaacacgcctatcaggtcagttactccatcaaaccctacaagggggctttcaccaaggaggatttgtccagctgaagtcaaagccaatggtctgaatcagccattgaacggattggcaaagagattggctacacatgagagcagaagagaggataagacagaatctggtagtgatgtttcttcacagacatcagaaaactctaaagctgctactcgcccgagcaggactctgtcttcacctgttctacatcgctcgtcgtcaccaaacaaggtcttgtcagctgcatcccctgcttctacagcctttcaaagtcctttgaggacaaggccttcggcaccttgccgatcacgatgttgttcaacaagtcaatcaggcgttgcacctcctgtgtttaactatatagttgatgcgaggaaagggaagaagagtgcaagccagtttgagaatattcaccaattacgtctgctgtataatagatgcctgcagtggcagtttgtatatgctcgttcagaagatacactaaccttccaaaagagtagcatagagagtattctttacagtgtgtggaaaagtatcgtgcagctgcgggattctgttacagtcagaagaattgatgttcaactcctgcagcaagagctcaaactgtactacgttttaaaagagcagattgcttatcttcaacattggccggaactagaaggagagaacggtagtactttgattggggctattgaagctttacaagcatgcacacttcgccttccagttacatcaggagcacaggcagatgctgttgcagttaagaattctataagctcagcggttgatgttatgcaagctttgagttcctcaattttgtacctcctatcaaaggttgaaggtaggacgtctttggtttctgaactttcagacatggcaaggcaagaaaaggttgcccttggtgagtgtagagagctcttagctacggcagcaaaactacaggtacaggagtccagcctccgtactcatctgatgcaactgaaggaaggagttttacgatga
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| Protein seq | MDAVKTAGRKAAGTVDCALRQPLVPPEKNIAAPAGRRREVASRFKSGGTPAPQAAASSVRRCTSPSLSRASAAEGTASTNRAQSAERRRSSTPSSSSTPSGGGGGAASRPRTPVRVAAATEVHGISRRAASTKPPDGLWASARSVPPLLQKESMAMATSAKKRHKLADGSSSDQTKVQARNVTETERKRSPLRGRNIGNQCENARPSETPNKRVVEQHRWPAAMMGGHGSAVLTSRSNGVANTPIRSVTPSNPTRGLSPRRICPAEVKANGLNQPLNGLAKRLATHESRREDKTESGSDVSSQTSENSKAATRPSRTLSSPVLHRSSSPNKVLSAASPASTAFQSPLRTRPSAPCRSRCCSTSQSGVAPPVFNYIVDARKGKKSASQFENIHQLRLLYNRCLQWQFVYARSEDTLTFQKSSIESILYSVWKSIVQLRDSVTVRRIDVQLLQQELKLYYVLKEQIAYLQHWPELEGENGSTLIGAIEALQACTLRLPVTSGAQADAVAVKNSISSAVDVMQALSSSILYLLSKVEGRTSLVSELSDMARQEKVALGECRELLATAAKLQVQESSLRTHLMQLKEGVLR |
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| Function | AUGMIN subunit 8 [UniProtKB/Swiss-Prot:Q9SUH5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0017730 | OsARC_08g0017730.01 | Chr08 | 22432755 | 22436560 | - | NAM | ||
| CDS seq | atggatgccgtgaagacagcggggaggaaggccgcaggtaccgtcgactgcgccttgcggcagccgctggtgccaccggagaagaacattgctgctccggcaggtcggaggagggaggtggcctccaggttcaagtccggcggcacgccggcgccacaggctgctgcttcctcggtgaggcgatgcacgtctccaagtctgagcagggcttcagcagctgaaggcacagcatcgacaaacagagcacagtcagctgagaggaggaggtcttccacgccttcttccagctcgacgccgtccggtggtggtggcggcgctgcgtcgaggcccaggacaccggtgcgtgttgcggcagccaccgaggtacatggcatctctcgtcgtgcagccagtacaaagccccctgatggcttgtgggcatcagctcgtagcgtgcctccattgcttcagaaggagtccatggcaatggcaacctctgccaagaagagacacaagcttgctgatggctcatcttctgaccagaccaaggtgcaggcaagaaacgtgaccgagactgagaggaaaagaagtcctctcagagggaggaacattggcaaccaatgtgagaatgctcggccatcagagactccaaacaagagggtcgttgagcaacaccgatggccggcggcaatgatgggtggccatggctctgccgtcttaacttcgagaagcaatggtgttgccaacacgcctatcaggtcagttactccatcaaaccctacaagggggctttcaccaaggaggatttgtccagctgaagtcaaagccaatggtctgaatcagccattgaacggattggcaaagagattggctacacatgagagcagaagagaggataagacagaatctggtagtgatgtttcttcacagacatcagaaaactctaaagctgctactcgcccgagcaggactctgtcttcacctgttctacatcgctcgtcgtcaccaaacaaggtcttgtcagctgcatcccctgcttctacagcctttcaaagtcctttgaggacaaggccttcggcaccttgccgatcacgatgttgttcaacaagtcaatcaggcgttgcacctcctgtgtttaactatatagttgatgcgaggaaagggaagaagagtgcaagccagtttgagaatattcaccaattacgtctgctgtataatagatgcctgcagtggcagtttgtatatgctcgttcagaagatacactaaccttccaaaagagtagcatagagagtattctttacagtgtgtggaaaagtatcgtgcagctgcgggattctgttacagtcagaagaattgatgttcaactcctgcagcaagagctcaaactgtactacgttttaaaagagcagattgcttatcttcaacattggccggaactagaaggagagaacggtagtactttgattggggctattgaagctttacaagcatgcacacttcgccttccagttacatcaggagcacaggcagatgctgttgcagttaagaattctataagctcagcggttgatgttatgcaagctttgagttcctcaattttgtacctcctatcaaaggttgaaggtaggacgtctttggtttctgaactttcagacatggcaaggcaagaaaaggttgcccttggtgagtgtagagagctcttagctacggcagcaaaactacaggtacaggagtccagcctccgtactcatctgatgcaactgaaggaaggagttttacgatga
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| Protein seq | MDAVKTAGRKAAGTVDCALRQPLVPPEKNIAAPAGRRREVASRFKSGGTPAPQAAASSVRRCTSPSLSRASAAEGTASTNRAQSAERRRSSTPSSSSTPSGGGGGAASRPRTPVRVAAATEVHGISRRAASTKPPDGLWASARSVPPLLQKESMAMATSAKKRHKLADGSSSDQTKVQARNVTETERKRSPLRGRNIGNQCENARPSETPNKRVVEQHRWPAAMMGGHGSAVLTSRSNGVANTPIRSVTPSNPTRGLSPRRICPAEVKANGLNQPLNGLAKRLATHESRREDKTESGSDVSSQTSENSKAATRPSRTLSSPVLHRSSSPNKVLSAASPASTAFQSPLRTRPSAPCRSRCCSTSQSGVAPPVFNYIVDARKGKKSASQFENIHQLRLLYNRCLQWQFVYARSEDTLTFQKSSIESILYSVWKSIVQLRDSVTVRRIDVQLLQQELKLYYVLKEQIAYLQHWPELEGENGSTLIGAIEALQACTLRLPVTSGAQADAVAVKNSISSAVDVMQALSSSILYLLSKVEGRTSLVSELSDMARQEKVALGECRELLATAAKLQVQESSLRTHLMQLKEGVLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0442000 | RBH | 0.0 | 0.0 | 1.267298 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34320 | RBH | 0.0 | 0.0 | 0.329643 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0442000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017640 | RBH | 0.0 | 0.0 | 1.430969 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017490 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017440 | RBH | 0.0 | 0.000000 | 3.037264 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010710 | RBH | 0.068342 | 0.223834 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017580 | RBH | 0.0 | 0.0 | 1.998246 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0342500 | RBH | 4.3909795 | 0.1352125 | 0.8410145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017480 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0362600 | RBH | 4.5822025 | 0.0639165 | 5.933346 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017330 | RBH | 0.0 | 0.0 | 2.318150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017390 | RBH | 0.0 | 0.0 | 0.000000 |
