Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0014660 | OGI:08053470 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:19179030-19186515 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcccatggccgttcccgctggaccgacatggaggtccgattgtttcttgaaagctgcctggaggaaatagcggctcacaacatcatcaccactcgcaaccccaacccggtcgcatgggacaatttggctacaaaaatgtttgccaagtgtcggaagacggtgaacagggcccaggttcagtacatttggcgtgtctgtcggaagcagttcaacatgtgggcgtggtttgagtcgcaggctaccggtctcggtcgtgatccgcgtacgagtgccattctcgccgacgacgcctggtggagaatgcaagaaggggtatgtcacttatcatttacggagtacattattatgcatgtctctgtgaatacatgtcactaattcgtagcataccagccatgtcctagtttttccaatagggattgtttatttgtgatgtaaatcattggagtaggcaatatgttcgatgcaattagcgctaaccaaatatagcaaacgcttcagttaagtttttaagatattatgcttgtatttgtgtgaactgttgtgcttgtattcgtaacaactgctgtgctaggacatgtttgcatattaccattgagcatttgcatatcacaccattgtcgggtcaaattttgtactccatccgtttcacaatgtaagtcattctagtatttattttccacatttatattgatgtcaatgaatctagacatatatttatctagattcattaacatcaatatgaatgtggaaaatgctaaaatgacttacattatgaaacggaggaagtacctcccatctgaagcattttcttgcccatttttactgagacgctgatcctctaataaaattagaaaggctataactttactcgtttgtcagagtataactttacgacggttataagctagtgtttgtccggcttttggactggtttttcaacttctgcattgcatttatctctgaacaattataatatgccgtgcattaattattgaaatcatttctcgtgaaaaagaaatgatgtgttatttcgacagattgttttattgactagatgagcattcatttatgtacagcctcatggtctaatgcctgctttgtaggccatggcatttgccctgattacattaaattatttctttcgatgtgtttgtttaattaacactgaccatgatccaccttctcactcacctcacctgatgctcttaaatgtgtataaccacgttggcctggaatctttctcctagcttatgtgtacagatttggaaagtttgcagttccagatttcaaggcaatacataataatacatatttttcacatgttctatatttttttataatagaatataatatcccgacctttgctcaagatgagctacagccaattattacaaagtagcactcaagataatagtatagttcaaataaaatagaacacacttaaataggaaaagctaaaataaggagaacacatttattccagcctatttgtgaatctccatccatagacacatttgtaattgtgcccaaaaccggagccaatgagttgccctgaaaattacctgcatataggaaataaatgacgatttgtcaaaaaccatatcatttctactcaaccatagagcccaacaaatcactacaagaaatatgaccttctgtgacgaattcctcgtgacgtcggattcgtcattagcacattccattttatgacgattagtatgagacggggtaacttagtgacgaaaaaaaggtgttcgtcgttaatatcaactagaaatcgtcacaaagtatttcaatgggacattgtgacgaatattaatttgtcataaacgacaaatagcaaacgtcacagatttatatgatgcatttctagaaaaatataataaaagttaaagcaatttaatcaagtgaatcaatgaggaaactaaaatttttcctttaaaaatcatagccagaaatatttttttaatattatacatgttctaaattattctatgaaattttcagtgaattttcggggctcaatacctaattttaataccacaaaattcatttaacctattaaaataaatagaaaacaaattaaattccctctctctcgttgggcctttttcggcccaagtgttactttctccctccttagcccacagcttccctctccctctttgggccggcttccccttcccctcctccctctttgggctgccggcccagtccttttgctactccctcgccgagaagtccattttgcctccctcctctcaattcaaataaattttcgggtagtaaaaaatttaaaatgaaaaaattctcaacaaaaaagttgtataactcatcaatatctacaacttttattttggtcattttactatatgaccttgtttcaataatttgaatttgaatttcaaattatgataacttcaaacaacatttttaaatactaaatgatttcaactgaaaaaatcatcaacaacaaatttgtataactcatcaatatctataacttttattttcgtcattttgctatatgactttgtttcaataatttgaatttcaatttcaaattatgataacttcaaacaacatttttaaatactaaatgatttcaactgaaaaagtcatcaacaataaatttgtataactcatcaatatctataacttttattttagtcatttcttcatccgacaaagtaatagtagcattgttcataaaatttacatctctctccaatggtttataaactatataagagatatatacattcttctgaacaatattacaaatcactttgacggatgaagaaatgacccaaataaaagttatagatcttaatgagttataccactttgttattgatgactttttcagttgaaatcatttagtacttataaatgttgtttgaagttatcataatttgaaattcaaattcatactgttcaaacaaagtcatatagaaaaatgaccaaaacagaagttgtagatcttgataagttatacaactttggtgttgaaaactttccaatttgaaatcatttactatccgaaaagttatttgaatttcttatattttaaaattcaaattttatatagttcaatcaaactcggatggagaaatgaccaaaagaaaattggtagatatcaatgagttgtacaacttttgttttttacaactttttcatacgagttgatttagtgccataaaaatcgattcaaaatttcaatgaaaattttctctcctcgccatttcgaaaatttcatctctccacctcttctctccccccccccctgatattttcccattctcagtcctcaaacgttctcttcctctctcactctctctcctctccctctctttctcttcctctctcggcgcccccgtcgctcgggctgccctccgcgcgcggccgctcctccccggtggtggtggtggcagcggcgccgaccccgacgacggcgttgacgagtgggcgacgacgacgatgacacgggtggtgccggcggcggatggcgacctcgggcaggagcggcgatggcgtcggcgggcggcggatccggcggcgctgccctcgggagggccggatccgccgccatagggagtggctacggtggcggcgggcggcggctcggcgacctcggctcggcggcccgccatcccctcctcaccgccgctgacaacgacgacgacgaggcgaccctcccccctcctcaacaccgcggcggcgggggcggcttggccaccccgcgcggatccggtgccgccgacgataaggcagctatagctttactcaaagtgatttggcaacaagtagtataagcatatggcatgtcatcagatggatctgtgcttcgtaattgcaagcacgttaacatagtttagcttagccttaaaaccatcccctgcagcaggtttggttggttggggcatcgatctgtcatgtgagaggaggagaaggtagctataactagtgaaatgccatcagtgcaaaccaccacaaggaatcaggcatcagcatcagtcatcacttggatttgtctgcgtgtgtgtgtgtgtgcatcttttgtgcatgcatatatgggtactagcataactttataggaggcatttagacacagccacagcagcagtgtactgctctgaagatctgcaatatatgttgtttgttgttgccgaaaaggagaaagtccttcacatctatcactgtctaactctccaccagaagcaatttgcattttttgcattcctcacctcacctcacagaaacataattcttgacttgtaatcaaattgaagccatgtttgttaatctcatcagaattcagaaaccatccatttttcagaagaaagtatatatataaatcgttttgcctgatctctgagcttgcttagtttctttgttacaaaatgctgaaccgagctgaactgaaaatttcagaaatgtgtgatgtgcaggtggagataatcagaggaatatgacaaattatgttaggttaggtttcctatcagtttattttttaattatggtctagagcaatcaagtgtacttacaaactaaattatatgcccatgttcagtcttttgttttgtatgcaaaatgggtattggttttgtcagcagttatttttgtagtttgtaaatttcagcaagtatatattagttctgttaacaaatttcagaaagtatatattagttttgtaaatgcagtagaattgtcaccatatatgatttttttttatcatccacactttactgttataatggctgaaaatttgtcgataaagcactacgtacacagccaattgagtttgcaattcagtttgttttgtcgtagagggaagggggaggggttctgcttgcagtaggcttacattactatggctatgtttcacatgtcttggcttgtataactctattgttttgatttgctatgcctatgttctctttctatttaggtacttactagtactatatgttcagtttgcaatgcctatgcctatgcctgtgcctcaatttgcaatgcaggggttcaaagctttgtatggccatatgcaggggttcaaagttttgtatggttgtggttacaaatattgtgctactaatgtttgcttttctataggacaagtgtgaaagaaacttaaccatgagaatgttccatactattctattgttccatgttccttttaactgtgaaacacagcaaaggacaggatctcattgacatgccatggtaagatatcagtaaattgcttcgcttcttttttactgttatatgagaaatgagtataactccatggtctactttatgcataagttacctttgatctgttcaagtagttttcagtgtacttgaattctttgttcatggttatgtacataaataagtagtttagattagatattgtaaattttctctttcagcagctgaaactaaacatgcatttacaaattgtttgcatgtaatttcagagataaggtttgttgtcttgctgattcacgaagagatggcagtatggttggtgtgatttcgacacgtgacattgtgtttggtaagtggacctatgatcgtatttggacatggttgggtcggcccatgtggacatgtgactttgttttggtcagtgacttatggctggatatggtgactgatgtattgaacttgattattttgctatctgggtatgcatggtcaatgtactgatgtattttgttttggaaagttaccttgtaatgtattttgtatcaaaattgtgattgtatttgaatatgtgaatgggttgacccatatgtatttgcaatgtatcatatgtcaactgaattttattggatattaactgggctacaatctttgtgctatatgtttgttgttgggtatattgcttgggcctttattgtctttcaaaatgggcttgacccactcatttttttttgatactactgtaaatggattaatataattgggctgaaatagtgtataaatccctcctcaattgggctcagcccataaacaggctgaaaatatgctacatcatggatgggccaagctaaaatctagacgggcttgccattgggctaagcccataatcatgttgctcaccacatgggccttaacaggccacatggcatcttatgacgatttttgggcttgatggtgacgaaaatggacgtcatagacttacgacgacagaaggatcgtcactagattaatgacgaaaaaataaggtttcgtcatagaacgtcattagagacacatgatagcatgataggtgatgaatggattttcgtcacgggagcgtctcagattacggaacgtgacgaaaaattcaatgtttgtgacgtaaatgaagcgtcacctatcataagatttcttgtagtgaaatggccgaagcttcgacaagtaccagtttactctttttttggtcaacccccaaaagccacctataaaaaatataagatatactaattggaaggttaaaaccaaaagaaaactgaactgccctatataggactataggtgcagcatcttttttcaactgtctataggactgtaggaggtgcatcataaaaatgcatcttcacatatcatttgcatggctgctggcgacaggccaaacctaaggcagacaagtagctgtttatgcagctaatgatgggcataaaccatgctgcttctctggcacaggcagatagcaaaaggtcaccaaacaaagtaaagctttaggcatggcatttggcaaagtaagcaagctgtagatagatagacatacaattaacaaaggcaatccatatccaccatctgaatgagagttatggaggctggtagtagcaaagtgatgtgacgagaggtttggggacatttgtttactgtggtctgtccagtatgtacctgcgtgttgttggcacatcttcactcacttgccatgcctgtgttaatgatgctaatgatggccaagccccattttcactcacttgccatgcctgtctgtgggtgacatccacttctcttcagccatataggcaacagcatgttcagtttgactgaaattattaggctaatgcttgcagtacattattaatttttagtatttggtagcattgtgtgaccgatgtgtagttatcagtatacacaaagttttttaagttgactacagacttgctgaaagtaaaattattaccgggcaatattttttagcatgaacacctactactaatttgttgcatacgaattttaaggctgcagctgtaacatttcgcactgtccattctgacttgtgcatgtctaaatgtcacagatcaagaaaggcgtgagcaccttcagaaatgatcctctcaagcacattcagctgcaccacgcggtgttcgaggggcgcaccgttgtcggcaaccactcagacattgctggagcatcaccaacacaagaacaagcacaagttcaatggcaagctgttgatgttgcgcagctcacagccgcttacaggtttgtgtga
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| CDS seq | atgtcccatggccgttcccgctggaccgacatggaggtccgattgtttcttgaaagctgcctggaggaaatagcggctcacaacatcatcaccactcgcaaccccaacccggtcgcatgggacaatttggctacaaaaatgtttgccaagtgtcggaagacggtgaacagggcccaggttcagtacatttggcgtgtctgtcggaagcagttcaacatgtgggcgtggtttgagtcgcaggctaccggtctcggtcgtgatccgcgtacgagtgccattctcgccgacgacgcctggtggagaatgcaagaagggatcaagaaaggcgtgagcaccttcagaaatgatcctctcaagcacattcagctgcaccacgcggtgttcgaggggcgcaccgttgtcggcaaccactcagacattgctggagcatcaccaacacaagaacaagcacaagttcaatggcaagctgttgatgttgcgcagctcacagccgcttacaggtttgtgtga
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| Protein seq | MSHGRSRWTDMEVRLFLESCLEEIAAHNIITTRNPNPVAWDNLATKMFAKCRKTVNRAQVQYIWRVCRKQFNMWAWFESQATGLGRDPRTSAILADDAWWRMQEGIKKGVSTFRNDPLKHIQLHHAVFEGRTVVGNHSDIAGASPTQEQAQVQWQAVDVAQLTAAYRFV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0014660 | OsARC_08g0014660.01 | Chr08 | 19179030 | 19186515 | + | NAM | ||
| CDS seq | atgtcccatggccgttcccgctggaccgacatggaggtccgattgtttcttgaaagctgcctggaggaaatagcggctcacaacatcatcaccactcgcaaccccaacccggtcgcatgggacaatttggctacaaaaatgtttgccaagtgtcggaagacggtgaacagggcccaggttcagtacatttggcgtgtctgtcggaagcagttcaacatgtgggcgtggtttgagtcgcaggctaccggtctcggtcgtgatccgcgtacgagtgccattctcgccgacgacgcctggtggagaatgcaagaagggatcaagaaaggcgtgagcaccttcagaaatgatcctctcaagcacattcagctgcaccacgcggtgttcgaggggcgcaccgttgtcggcaaccactcagacattgctggagcatcaccaacacaagaacaagcacaagttcaatggcaagctgttgatgttgcgcagctcacagccgcttacaggtttgtgtga
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| Protein seq | MSHGRSRWTDMEVRLFLESCLEEIAAHNIITTRNPNPVAWDNLATKMFAKCRKTVNRAQVQYIWRVCRKQFNMWAWFESQATGLGRDPRTSAILADDAWWRMQEGIKKGVSTFRNDPLKHIQLHHAVFEGRTVVGNHSDIAGASPTQEQAQVQWQAVDVAQLTAAYRFV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g29610 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014590 | RBH | 0.102120 | 0.0 | 2.184200 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014440 | RBH | 0.0 | 1.113256 | 0.700939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014500 | RBH | 1.003475 | 0.000000 | 1.192780 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0287100 | RBH | 0.1223065 | 0 | 1.2521905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014510 | RBH | 0.0 | 0.000000 | 0.260011 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0310500 | RBH | 0.172606 | 0 | 0.3959365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014030 | RBH | 0.072881 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014120 | RBH | 0.225241 | 2.471299 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014010 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014760 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014160 | RBH | 0.138634 | 0.740958 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014170 | SBH | 0.447432 | 1.925169 | 2.174773 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014330 | RBH | 0.0 | 0.0 | 0.000000 |
