Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0011980 | OGI:08043070 | 4/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:15351985-15352423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGTGACCGTGACCAGGACGGCACAACGAAATTCTATTTGTCAATCGTCCCATTAGTCAATCGCTATACGACACGTACAGGCTGGTGTAATTCCATTTGCCACAAATTCTTTTTCCCCCAAGACGCGGGAAATTCTTCCCATGCTAATGACAGCAGCAAAGCCGCAAAGCAAGCCAACGCCACGGCAGCTCGGCTCCGATCGGCCAAGGCCATGGCCGGCAATCACCGAAGCTCACAGCTACACCTCCTCCTCCTCTTCTGCTGCACCACCACCCTACGCGCCGCGGCGCTCTCCTTTGACTACGATTTCTCCGCGGACGCCGCGAAGAACTTGGTGTTCATGGGAGACGCGGCCCACGCCGGCGACCGGATCAACCTGTGGAGATTATGGGTACCCCATAACCACACGGCATGGTTATCCGACTAGTTATAGGGGA
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| CDS seq | ATGCGTGACCGTGACCAGGACGGCACAACGAAATTCTATTTGTCAATCGTCCCATTAGTCAATCGCTATACGACACGTACAGGCTGCAAAGCCGCAAAGCAAGCCAACGCCACGGCAGCTCGGCTCCGATCGGCCAAGGCCATGGCCGGCAATCACCGAAGCTCACAGCTACACCTCCTCCTCCTCTTCTGCTGCACCACCACCCTACGCGCCGCGGCGCTCTCCTTTGACTACGATTTCTCCGCGGACGCCGCGAAGAACTTGGTGTTCATGGGAGACGCGGCCCACGCCGGCGACCGGATCAACCTGTGGAGATTATGGGTACCCCATAACCACACGGCATGGTTATCCGACTAG |
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| Protein seq | MRDRDQDGTTKFYLSIVPLVNRYTTRTGCKAAKQANATAARLRSAKAMAGNHRSSQLHLLLLFCCTTTLRAAALSFDYDFSADAAKNLVFMGDAAHAGDRINLWRLWVPHNHTAWLSD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0011980 | OsARC_08g0011980.01 | Chr08 | 15351985 | 15352423 | + | NAM | ||
| CDS seq | ATGCGTGACCGTGACCAGGACGGCACAACGAAATTCTATTTGTCAATCGTCCCATTAGTCAATCGCTATACGACACGTACAGGCTGCAAAGCCGCAAAGCAAGCCAACGCCACGGCAGCTCGGCTCCGATCGGCCAAGGCCATGGCCGGCAATCACCGAAGCTCACAGCTACACCTCCTCCTCCTCTTCTGCTGCACCACCACCCTACGCGCCGCGGCGCTCTCCTTTGACTACGATTTCTCCGCGGACGCCGCGAAGAACTTGGTGTTCATGGGAGACGCGGCCCACGCCGGCGACCGGATCAACCTGTGGAGATTATGGGTACCCCATAACCACACGGCATGGTTATCCGACTAG
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| Protein seq | MRDRDQDGTTKFYLSIVPLVNRYTTRTGCKAAKQANATAARLRSAKAMAGNHRSSQLHLLLLFCCTTTLRAAALSFDYDFSADAAKNLVFMGDAAHAGDRINLWRLWVPHNHTAWLSD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0334300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g24770 | SBH | 2.847247 | 1.980998 | 0.176995 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0334300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011940 | RBH | 0.225447 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012080 | RBH | 0.192143 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012140 | RBH | 0.711444 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011880 | SBH | 12.138292 | 2.105417 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0231900 | SBH | 0.718593 | 4.9121045 | 0.228294 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011970 | RBH | 0.072100 | 0.270051 | 0.282663 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0245400 | SBH | 1.4823175 | 4.8161645 | 0.0924985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011460 | SBH | 0.320321 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011640 | RBH | 1.374467 | 2.478332 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011520 | RBH | 3.374974 | 0.419354 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012290 | RBH | 0.201019 | 0.000000 | 0.120326 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011520 | SBH | 0.076712 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011750 | RBH | 0.421809 | 0.0 | 0.198680 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011670 | SBH | 1.967866 | 1.836925 | 0.610196 |
