Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0005520 | OGI:08012150 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:4793833-4794125 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAAAGTTGCTTCTTCTCTAGACTGGGGCCTCCTCGATTCGGACTACCTACGAAAGGTAAAGCACAGGTTCTGCCTTGTTCATTTCAACATACTAGCTTGCTTGACTTGGGTTGTTAGATGGCTGGTGGGCACACACACCGGACGGAGGCGGAGCTCAAAGCCTTCCTGGACAGTTGCATGGAGGAAATCGAGGGCCGCACCATCACCGGCAGCTGCTCGAAAGCTCAGGACTACGTCAATCTGCAGGCCGCGATTTACGAGAAGGCCAGCAAGGTTGTGAACAAGAACTAG |
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| CDS seq | ATGAAAGTTGCTTCTTCTCTAGACTGGGGCCTCCTCGATTCGGACTACCTACGAAAGATGGCTGGTGGGCACACACACCGGACGGAGGCGGAGCTCAAAGCCTTCCTGGACAGTTGCATGGAGGAAATCGAGGGCCGCACCATCACCGGCAGCTGCTCGAAAGCTCAGGACTACGTCAATCTGCAGGCCGCGATTTACGAGAAGGCCAGCAAGGTTGTGAACAAGAACTAG |
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| Protein seq | MKVASSLDWGLLDSDYLRKMAGGHTHRTEAELKAFLDSCMEEIEGRTITGSCSKAQDYVNLQAAIYEKASKVVNKN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0005520 | OsARC_08g0005520.01 | Chr08 | 4793833 | 4794125 | + | NAM | ||
| CDS seq | ATGAAAGTTGCTTCTTCTCTAGACTGGGGCCTCCTCGATTCGGACTACCTACGAAAGATGGCTGGTGGGCACACACACCGGACGGAGGCGGAGCTCAAAGCCTTCCTGGACAGTTGCATGGAGGAAATCGAGGGCCGCACCATCACCGGCAGCTGCTCGAAAGCTCAGGACTACGTCAATCTGCAGGCCGCGATTTACGAGAAGGCCAGCAAGGTTGTGAACAAGAACTAG
More
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| Protein seq | MKVASSLDWGLLDSDYLRKMAGGHTHRTEAELKAFLDSCMEEIEGRTITGSCSKAQDYVNLQAAIYEKASKVVNKN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005530 | RBH | 0.0 | 0.0 | 1.407886 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005520 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005600 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008700 | RBH | 8.410414 | 2.827331 | 15.061779 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0071400 | RBH | 1.3318955 | 0 | 6.591211 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0076400 | RBH | 0 | 0.0414925 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0042290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005180 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005170 | RBH | 0.0 | 0.0 | 0.0 |
