Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_08g0004070 | OGI:08009050 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr08:3579846-3583625 | ||||||||
| Gene Symbol | PRP5, OsPRP5, OsRH42, RH42 | ||||||||||
| DNA seq | TCACTGAAATGGTGCCACCGCACCGATTTATTCAAAGCAAGAATATAAGACAAGTTATTAGGTTTATAGCATCAAAAGCCAACAAGCACTTCCAAAATTGCACTAGAAAGCTCAGCACCTTCTCTTGCATTTAGCATGCCCCATTAGTGCTCGGGGTGAACAATGTAACATAGCTTGAGAGCTATGTTCACATAACAGTGTTCACAACAGACTGCCTGGAACACATCCTGTGTTAACAGCAAGCTACCACCACTGTTAATAGTAGCTACAGAAATTGTCAAAACATTCTAGATTAGACAATCTCCACAATAACCATGCAATAATAAGTTTAAAAGTAAGCATTAGCTGCCATGCACGATAGCTAAGATTTAAAATATGAGCCGCGCATATGGAAGAACCAATCCAAGAATAGCACTGTGGTCTGCAAACCCATGAAAGCTGCACTGCAAAAATAGAGAGAGTGTCAGTAAATAAAATACACCAGCCAACAATAACACAGAAACTATCAGGCAGTCAAAATAAGACAAAGGAATAAGAAATACATCGATTGGGTTTAATATTCAATCCTAGATGCTATGCTTTTTTTTCCTGCATACCTTGTCAAGAAAATCCCTACATCTGTTCCGCCCCTCAAATAACAGAGTACTTTCCAGTTTGGGCAGAACCAGGAAGGTTCAGAGCATGGTTGGCACAATCTTCAAGGACACGCTTCAATTCTGCTTTCGCCTTCTTGACAGATAGCTCAGTGGGGCCCTCTATGAACAGGTACAGCTTGCGTTCATTAGCACCAACAATTTTTCCTTGAGGAAAAAAGGTTCCCCTTGTAGTGATTGCAGCACCCGTCCATTCCTGGATAGGACCCAATGTTTCTTTGTGAGTGATCTTCCAGCGGGCATTTTGTGGGAAATCATTAATCTCAAGCTCAGCCTCATAATGTTCTGGGACTGCATGTGCTTGTATCCTTGCCAGATTTTGCTGTATGTTAAATGCAGCCTGCAGTGCACGTGCTGTGGCCTCGTTATTCTGTGTGTTTGAAGCAATGGCTAGAGGAAGCAAGGGCCCTACAGAAGTGCCTTGTGTTTGCTGGTTGGCATTGCTAGCAGCCTTTGCTGCAACCATAGCAGCAGCAGCTTGAGCAGCAGCAATAGCTTGTGCCGCAAGGTCACCTCCCGCCTTACGAACCCCTCCTTCCTCATCAGAATCTGAATCTGACTTGTCCTCCTCATAACCATATTCCCTTGCCTGAGCCTTCTTTGCAGATTTCCGTGCTTCATCCTCCTCTTCATTGAACTTGAAACCGCTTCCACCATATCCTGTTCCATGGGCCTGCTCTGTTCCCTGCTTCACCTTTGCCATAAAACGATCAGCTAGACCTTTCAGGTCCTCTGGAACAGCCTGCTCTGAGAGCTCCAAAGCTTTAACAAGGTCTGGAGCATAACGCTCCTCTTCCTCAGAAATAAAAGTCACGGCAAATCCCTTCCTCCCAGCACGTCCAGTTCGCCCAACACGATGAACATAATCCTCATAGTGGTTCGGGACATCATAATTCACAACAAGCTCAAGCTCCTTGACATCTAAACCCCTAGCAGCAACACTGGTAGCAATCAGCAAGCTGCACACATTGCTCTTGAAATCAGCTAGTGTTGATTCACGGTCAGTCTGGTCTTTCCCACCATGCAGGGATAGGCATGGATATCCATGCTGGAACAGGTCTTTGAGTAGAGAATCACATTTATCTTGTGAATGGACAAAAACAAGAATTTTACCTTTATCAAACCACTCTCCAAGCAGCTCCAACAGCCTAAAGAACCTCTCATTTTCTGGCCGCACCTCAACCAGTTGTGTGATATCTTTGTTGACGACACTCCTCCCACCCACCTGGATCTCAACAGGCTTTGTCAGCACCTTACGGGCCAGTATCTCCACCTGACGTGGAAAAGTGGCTGAGAAAAGAACTGTCTGCCTATCTGGACGAGTATTCTGAACTATCCGAGTAATCTGAGGCTCAAAACCCATATCAAACATCCTATCAGCTTCATCCATCACCAAGAATGTAACTCTCCGAAGATTAGTAATCTTCCCACTGCTTGTGCAAAGAATATCAATCATCCTGCCTGGTGTACAAACAACAATTTCAGCACCCCTCTTCAGTTCACTGATCTGCTGGGCAACTCCAGAACCTCCATAGATAGCAACACAGTTGATGCCAAGCGCCTTCGAAAACTTCTTGATGTCTGAATGTATCTGCACCACAAGCTCTCTAGTAGGAGCCATTATAAGCCCAATTGGGCCATCTCCAGGAACAACAGCCGGCTGATCTTTGACATGCCTCAGCATAGGCAGGACAAATGCTAGAGTCTTGCCTGATCCAGTCTTTGCAATTCCTATACAATCACGCCCACTCATTATGATCGGCAGTGCTTGTGCCTGTATAGACATCGGTTTCTCGAAACCAAGTTTCTTGATTGTATCAAGGAGCTTGCTGGTAAGCCCACTCTGCACCCATGTCTTTATTGGCTTGGGTACATCTTTCCCATGCACCTTGAGCTCCAACTGCTTCCGATAAGCTGCCACTTCCTCAGCTACCATCTTTGTAATATCCTTCACCTCAATGTAGAAATTCTTCCGGAACGGCTGGTAGTCGATCTTAGAATGGTCAACAATAGCCAACTTTTCTGCCTTTGTCTTCTTGACACGTTTCATGAACTCCTCATCATCCTCATCTTCGGAACCACCCTCATCATCCTCGTCATCTGCATAATCCGAGTCTGAGTCTTCTCCTTGTATAATTCTCCCCATCACCTTCTTTGGCCCCTTTTTATCCCCATTAGTCACAGCATCCTTAGCACTCTTATCATTCTTGTCATCCACATTGGCAGCAGGCATGCTCTCAAGCTTTGCGACCTCAGGCAATACCATCGAGTTCATGAACGCATCAAGCGGATCAATCTCATCTTCATCCATAGCATTGGCGCCGTTTGCATTATCACCCCCATTCGGAACATCAACGTCCATGGCACCGGCACCAGAACCACCATTATCATCGGATTTCTTACCATCCTCTTGGTTCCCCTCCTCATCAGACTCCTCGCCGTCCAAGGTCCACTTCTTCCCGGCATTGCCGCCATCTTCTGCTTCTGCGGGGGCCGCGGCGGCGGCGGCTGAGGTACCAACTCCGGCCTCCTCCTGCTCGCGGCGCTTCGTCTCCTCCTCGCGGCGCTTCATCTCCTGCCACTCCTTGATGCGGCGGCGCCGCGTCTCCATCTCTTCGTCCAGCTGCTTCTGCTCCTCCTCCTTCTTCTTCTGGCGCCGCCTCTCGGCCTCCTCCACATCCACCACCTCCTCCTCCCTGGCCCCCGAAGCCGGCCCCTCCGGCTCCGCGTCGCGGTGGTGGTGGTGGTGGTGCGACGACCGGCGGCGGCGCTTGCGGTCGCGGTCCACATCCTCCTCCTCCTCCTCCGCCGCCGCCTCCCGCCTCCTCGACCTCTCCTCGCGGTCCCTCTCCTCGCGCCGCCGCGCACGCTCCCTCTCCTTCTCCTTCTCCCGCTCCTCCCGCTCCCGCGCCTTCCGCTCCTCGCGATCCCGTTCCTTCTCCCTGTGGCGGCGCTCCCGGTCCCGGTCCCGATCCCGGTCGTCATCCCGGTCCTCGCGGTGGTGGTGGCGAGAGGAGGATCTCTCGCGGTCGCGGTCGCGGTGGTGGCGGGAGGAGGACCGCTCGCGGTCCTTCTCCTTGTCGCGGCGGTGGTGCTTGGAGGAGCCGGCCTCGTCGCTAGACCCCAT
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| CDS seq | ATGGGGTCTAGCGACGAGGCCGGCTCCTCCAAGCACCACCGCCGCGACAAGGAGAAGGACCGCGAGCGGTCCTCCTCCCGCCACCACCGCGACCGCGACCGCGAGAGATCCTCCTCTCGCCACCACCACCGCGAGGACCGGGATGACGACCGGGATCGGGACCGGGACCGGGAGCGCCGCCACAGGGAGAAGGAACGGGATCGCGAGGAGCGGAAGGCGCGGGAGCGGGAGGAGCGGGAGAAGGAGAAGGAGAGGGAGCGTGCGCGGCGGCGCGAGGAGAGGGACCGCGAGGAGAGGTCGAGGAGGCGGGAGGCGGCGGCGGAGGAGGAGGAGGAGGATGTGGACCGCGACCGCAAGCGCCGCCGCCGGTCGTCGCACCACCACCACCACCACCGCGACGCGGAGCCGGAGGGGCCGGCTTCGGGGGCCAGGGAGGAGGAGGTGGTGGATGTGGAGGAGGCCGAGAGGCGGCGCCAGAAGAAGAAGGAGGAGGAGCAGAAGCAGCTGGACGAAGAGATGGAGACGCGGCGCCGCCGCATCAAGGAGTGGCAGGAGATGAAGCGCCGCGAGGAGGAGACGAAGCGCCGCGAGCAGGAGGAGGCCGGAGTTGGTACCTCAGCCGCCGCCGCCGCGGCCCCCGCAGAAGCAGAAGATGGCGGCAATGCCGGGAAGAAGTGGACCTTGGACGGCGAGGAGTCTGATGAGGAGGGGAACCAAGAGGATGGTAAGAAATCCGATGATAATGGTGGTTCTGGTGCCGGTGCCATGGACGTTGATGTTCCGAATGGGGGTGATAATGCAAACGGCGCCAATGCTATGGATGAAGATGAGATTGATCCGCTTGATGCGTTCATGAACTCGATGGTATTGCCTGAGGTCGCAAAGCTTGAGAGCATGCCTGCTGCCAATGTGGATGACAAGAATGATAAGAGTGCTAAGGATGCTGTGACTAATGGGGATAAAAAGGGGCCAAAGAAGGTGATGGGGAGAATTATACAAGGAGAAGACTCAGACTCGGATTATGCAGATGACGAGGATGATGAGGGTGGTTCCGAAGATGAGGATGATGAGGAGTTCATGAAACGTGTCAAGAAGACAAAGGCAGAAAAGTTGGCTATTGTTGACCATTCTAAGATCGACTACCAGCCGTTCCGGAAGAATTTCTACATTGAGGTGAAGGATATTACAAAGATGGTAGCTGAGGAAGTGGCAGCTTATCGGAAGCAGTTGGAGCTCAAGGTGCATGGGAAAGATGTACCCAAGCCAATAAAGACATGGGTGCAGAGTGGGCTTACCAGCAAGCTCCTTGATACAATCAAGAAACTTGGTTTCGAGAAACCGATGTCTATACAGGCACAAGCACTGCCGATCATAATGAGTGGGCGTGATTGTATAGGAATTGCAAAGACTGGATCAGGCAAGACTCTAGCATTTGTCCTGCCTATGCTGAGGCATGTCAAAGATCAGCCGGCTGTTGTTCCTGGAGATGGCCCAATTGGGCTTATAATGGCTCCTACTAGAGAGCTTGTGGTGCAGATACATTCAGACATCAAGAAGTTTTCGAAGGCGCTTGGCATCAACTGTGTTGCTATCTATGGAGGTTCTGGAGTTGCCCAGCAGATCAGTGAACTGAAGAGGGGTGCTGAAATTGTTGTTTGTACACCAGGCAGGATGATTGATATTCTTTGCACAAGCAGTGGGAAGATTACTAATCTTCGGAGAGTTACATTCTTGGTGATGGATGAAGCTGATAGGATGTTTGATATGGGTTTTGAGCCTCAGATTACTCGGATAGTTCAGAATACTCGTCCAGATAGGCAGACAGTTCTTTTCTCAGCCACTTTTCCACGTCAGGTGGAGATACTGGCCCGTAAGGTGCTGACAAAGCCTGTTGAGATCCAGGTGGGTGGGAGGAGTGTCGTCAACAAAGATATCACACAACTGGTTGAGGTGCGGCCAGAAAATGAGAGGTTCTTTAGGCTGTTGGAGCTGCTTGGAGAGTGGTTTGATAAAGGTAAAATTCTTGTTTTTGTCCATTCACAAGATAAATGTGATTCTCTACTCAAAGACCTGTTCCAGCATGGATATCCATGCCTATCCCTGCATGGTGGGAAAGACCAGACTGACCGTGAATCAACACTAGCTGATTTCAAGAGCAATGTGTGCAGCTTGCTGATTGCTACCAGTGTTGCTGCTAGGGGTTTAGATGTCAAGGAGCTTGAGCTTGTTGTGAATTATGATGTCCCGAACCACTATGAGGATTATGTTCATCGTGTTGGGCGAACTGGACGTGCTGGGAGGAAGGGATTTGCCGTGACTTTTATTTCTGAGGAAGAGGAGCGTTATGCTCCAGACCTTGTTAAAGCTTTGGAGCTCTCAGAGCAGGCTGTTCCAGAGGACCTGAAAGGTCTAGCTGATCGTTTTATGGCAAAGGTGAAGCAGGGAACAGAGCAGGCCCATGGAACAGGATATGGTGGAAGCGGTTTCAAGTTCAATGAAGAGGAGGATGAAGCACGGAAATCTGCAAAGAAGGCTCAGGCAAGGGAATATGGTTATGAGGAGGACAAGTCAGATTCAGATTCTGATGAGGAAGGAGGGGTTCGTAAGGCGGGAGGTGACCTTGCGGCACAAGCTATTGCTGCTGCTCAAGCTGCTGCTGCTATGGTTGCAGCAAAGGCTGCTAGCAATGCCAACCAGCAAACACAAGGCACTTCTGTAGGGCCCTTGCTTCCTCTAGCCATTGCTTCAAACACACAGAATAACGAGGCCACAGCACGTGCACTGCAGGCTGCATTTAACATACAGCAAAATCTGGCAAGGATACAAGCACATGCAGTCCCAGAACATTATGAGGCTGAGCTTGAGATTAATGATTTCCCACAAAATGCCCGCTGGAAGATCACTCACAAAGAAACATTGGGTCCTATCCAGGAATGGACGGGTGCTGCAATCACTACAAGGGGAACCTTTTTTCCTCAAGGAAAAATTGTTGGTGCTAATGAACGCAAGCTGTACCTGTTCATAGAGGGCCCCACTGAGCTATCTGTCAAGAAGGCGAAAGCAGAATTGAAGCGTGTCCTTGAAGATTGTGCCAACCATGCTCTGAACCTTCCTGGTTCTGCCCAAACTGGAAAGTACTCTGTTATTTGA
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| Protein seq | MGSSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEEQKQLDEEMETRRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDEEGNQEDGKKSDDNGGSGAGAMDVDVPNGGDNANGANAMDEDEIDPLDAFMNSMVLPEVAKLESMPAANVDDKNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMVAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAASNANQQTQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAKAELKRVLEDCANHALNLPGSAQTGKYSVI |
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| Function | DEAD-box ATP-dependent RNA helicase 42 [UniProtKB/Swiss-Prot:Q84UQ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0004070 | OsARC_08g0004070.02 | Chr08 | 3580113 | 3583625 | - | NAM | ||
| CDS seq | ATGGGGTCTAGCGACGAGGCCGGCTCCTCCAAGCACCACCGCCGCGACAAGGAGAAGGACCGCGAGCGGTCCTCCTCCCGCCACCACCGCGACCGCGACCGCGAGAGATCCTCCTCTCGCCACCACCACCGCGAGGACCGGGATGACGACCGGGATCGGGACCGGGACCGGGAGCGCCGCCACAGGGAGAAGGAACGGGATCGCGAGGAGCGGAAGGCGCGGGAGCGGGAGGAGCGGGAGAAGGAGAAGGAGAGGGAGCGTGCGCGGCGGCGCGAGGAGAGGGACCGCGAGGAGAGGTCGAGGAGGCGGGAGGCGGCGGCGGAGGAGGAGGAGGAGGATGTGGACCGCGACCGCAAGCGCCGCCGCCGGTCGTCGCACCACCACCACCACCACCGCGACGCGGAGCCGGAGGGGCCGGCTTCGGGGGCCAGGGAGGAGGAGGTGGTGGATGTGGAGGAGGCCGAGAGGCGGCGCCAGAAGAAGAAGGAGGAGGAGCAGAAGCAGCTGGACGAAGAGATGGAGACGCGGCGCCGCCGCATCAAGGAGTGGCAGGAGATGAAGCGCCGCGAGGAGGAGACGAAGCGCCGCGAGCAGGAGGAGGCCGGAGTTGGTACCTCAGCCGCCGCCGCCGCGGCCCCCGCAGAAGCAGAAGATGGCGGCAATGCCGGGAAGAAGTGGACCTTGGACGGCGAGGAGTCTGATGAGGAGGGGAACCAAGAGGATGGTAAGAAATCCGATGATAATGGTGGTTCTGGTGCCGGTGCCATGGACGTTGATGTTCCGAATGGGGGTGATAATGCAAACGGCGCCAATGCTATGGATGAAGATGAGATTGATCCGCTTGATGCGTTCATGAACTCGATGGTATTGCCTGAGGTCGCAAAGCTTGAGAGCATGCCTGCTGCCAATGTGGATGACAAGAATGATAAGAGTGCTAAGGATGCTGTGACTAATGGGGATAAAAAGGGGCCAAAGAAGGTGATGGGGAGAATTATACAAGGAGAAGACTCAGACTCGGATTATGCAGATGACGAGGATGATGAGGGTGGTTCCGAAGATGAGGATGATGAGGAGTTCATGAAACGTGTCAAGAAGACAAAGGCAGAAAAGTTGGCTATTGTTGACCATTCTAAGATCGACTACCAGCCGTTCCGGAAGAATTTCTACATTGAGGTGAAGGATATTACAAAGATGGTAGCTGAGGAAGTGGCAGCTTATCGGAAGCAGTTGGAGCTCAAGGTGCATGGGAAAGATGTACCCAAGCCAATAAAGACATGGGTGCAGAGTGGGCTTACCAGCAAGCTCCTTGATACAATCAAGAAACTTGGTTTCGAGAAACCGATGTCTATACAGGCACAAGCACTGCCGATCATAATGAGTGGGCGTGATTGTATAGGAATTGCAAAGACTGGATCAGGCAAGACTCTAGCATTTGTCCTGCCTATGCTGAGGCATGTCAAAGATCAGCCGGCTGTTGTTCCTGGAGATGGCCCAATTGGGCTTATAATGGCTCCTACTAGAGAGCTTGTGGTGCAGATACATTCAGACATCAAGAAGTTTTCGAAGGCGCTTGGCATCAACTGTGTTGCTATCTATGGAGGTTCTGGAGTTGCCCAGCAGATCAGTGAACTGAAGAGGGGTGCTGAAATTGTTGTTTGTACACCAGGCAGGATGATTGATATTCTTTGCACAAGCAGTGGGAAGATTACTAATCTTCGGAGAGTTACATTCTTGGTGATGGATGAAGCTGATAGGATGTTTGATATGGGTTTTGAGCCTCAGATTACTCGGATAGTTCAGAATACTCGTCCAGATAGGCAGACAGTTCTTTTCTCAGCCACTTTTCCACGTCAGGTGGAGATACTGGCCCGTAAGGTGCTGACAAAGCCTGTTGAGATCCAGGTGGGTGGGAGGAGTGTCGTCAACAAAGATATCACACAACTGGTTGAGGTGCGGCCAGAAAATGAGAGGTTCTTTAGGCTGTTGGAGCTGCTTGGAGAGTGGTTTGATAAAGGTAAAATTCTTGTTTTTGTCCATTCACAAGATAAATGTGATTCTCTACTCAAAGACCTGTTCCAGCATGGATATCCATGCCTATCCCTGCATGGTGGGAAAGACCAGACTGACCGTGAATCAACACTAGCTGATTTCAAGAGCAATGTGTGCAGCTTGCTGATTGCTACCAGTGTTGCTGCTAGGGGTTTAGATGTCAAGGAGCTTGAGCTTGTTGTGAATTATGATGTCCCGAACCACTATGAGGATTATGTTCATCGTGTTGGGCGAACTGGACGTGCTGGGAGGAAGGGATTTGCCGTGACTTTTATTTCTGAGGAAGAGGAGCGTTATGCTCCAGACCTTGTTAAAGCTTTGGAGCTCTCAGAGCAGGCTGTTCCAGAGGACCTGAAAGGTCTAGCTGATCGTTTTATGGCAAAGGTGAAGCAGGGAACAGAGCAGGCCCATGGAACAGGATATGGTGGAAGCGGTTTCAAGTTCAATGAAGAGGAGGATGAAGCACGGAAATCTGCAAAGAAGGCTCAGGCAAGGGAATATGGTTATGAGGAGGACAAGTCAGATTCAGATTCTGATGAGGAAGGAGGGGTTCGTAAGGCGGGAGGTGACCTTGCGGCACAAGCTATTGCTGCTGCTCAAGCTGCTGCTGCTATGGTTGCAGCAAAGGCTGCTAGCAATGCCAACCAGCAAACACAAGGCACTTCTGTAGGGCCCTTGCTTCCTCTAGCCATTGCTTCAAACACACAGAATAACGAGGCCACAGCACGTGCACTGCAGGCTGCATTTAACATACAGCAAAATCTGGCAAGGATACAAGCACATGCAGTCCCAGAACATTATGAGGCTGAGCTTGAGATTAATGATTTCCCACAAAATGCCCGCTGGAAGATCACTCACAAAGAAACATTGGGTCCTATCCAGGAATGGACGGGTGCTGCAATCACTACAAGGGGAACCTTTTTTCCTCAAGGAAAAATTGTTGGTGCTAATGAACGCAAGCTGTACCTGTTCATAGAGGGCCCCACTGAGCTATCTGTCAAGAAGGCGAAAGCAGAATTGAAGCGTGTCCTTGAAGATTGTGCCAACCATGCTCTGAACCTTCCTGGTTCTGCCCAAACTGGAAAGTACTCTGTTATTTGA
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| Protein seq | MGSSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEEQKQLDEEMETRRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDEEGNQEDGKKSDDNGGSGAGAMDVDVPNGGDNANGANAMDEDEIDPLDAFMNSMVLPEVAKLESMPAANVDDKNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMVAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAASNANQQTQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAKAELKRVLEDCANHALNLPGSAQTGKYSVI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_08g0004070 | OsARC_08g0004070.01 | Chr08 | 3579846 | 3583625 | - | NAM | ||
| CDS seq | ATGGGGTCTAGCGACGAGGCCGGCTCCTCCAAGCACCACCGCCGCGACAAGGAGAAGGACCGCGAGCGGTCCTCCTCCCGCCACCACCGCGACCGCGACCGCGAGAGATCCTCCTCTCGCCACCACCACCGCGAGGACCGGGATGACGACCGGGATCGGGACCGGGACCGGGAGCGCCGCCACAGGGAGAAGGAACGGGATCGCGAGGAGCGGAAGGCGCGGGAGCGGGAGGAGCGGGAGAAGGAGAAGGAGAGGGAGCGTGCGCGGCGGCGCGAGGAGAGGGACCGCGAGGAGAGGTCGAGGAGGCGGGAGGCGGCGGCGGAGGAGGAGGAGGAGGATGTGGACCGCGACCGCAAGCGCCGCCGCCGGTCGTCGCACCACCACCACCACCACCGCGACGCGGAGCCGGAGGGGCCGGCTTCGGGGGCCAGGGAGGAGGAGGTGGTGGATGTGGAGGAGGCCGAGAGGCGGCGCCAGAAGAAGAAGGAGGAGGAGCAGAAGCAGCTGGACGAAGAGATGGAGACGCGGCGCCGCCGCATCAAGGAGTGGCAGGAGATGAAGCGCCGCGAGGAGGAGACGAAGCGCCGCGAGCAGGAGGAGGCCGGAGTTGGTACCTCAGCCGCCGCCGCCGCGGCCCCCGCAGAAGCAGAAGATGGCGGCAATGCCGGGAAGAAGTGGACCTTGGACGGCGAGGAGTCTGATGAGGAGGGGAACCAAGAGGATGGTAAGAAATCCGATGATAATGGTGGTTCTGGTGCCGGTGCCATGGACGTTGATGTTCCGAATGGGGGTGATAATGCAAACGGCGCCAATGCTATGGATGAAGATGAGATTGATCCGCTTGATGCGTTCATGAACTCGATGGTATTGCCTGAGGTCGCAAAGCTTGAGAGCATGCCTGCTGCCAATGTGGATGACAAGAATGATAAGAGTGCTAAGGATGCTGTGACTAATGGGGATAAAAAGGGGCCAAAGAAGGTGATGGGGAGAATTATACAAGGAGAAGACTCAGACTCGGATTATGCAGATGACGAGGATGATGAGGGTGGTTCCGAAGATGAGGATGATGAGGAGTTCATGAAACGTGTCAAGAAGACAAAGGCAGAAAAGTTGGCTATTGTTGACCATTCTAAGATCGACTACCAGCCGTTCCGGAAGAATTTCTACATTGAGGTGAAGGATATTACAAAGATGGTAGCTGAGGAAGTGGCAGCTTATCGGAAGCAGTTGGAGCTCAAGGTGCATGGGAAAGATGTACCCAAGCCAATAAAGACATGGGTGCAGAGTGGGCTTACCAGCAAGCTCCTTGATACAATCAAGAAACTTGGTTTCGAGAAACCGATGTCTATACAGGCACAAGCACTGCCGATCATAATGAGTGGGCGTGATTGTATAGGAATTGCAAAGACTGGATCAGGCAAGACTCTAGCATTTGTCCTGCCTATGCTGAGGCATGTCAAAGATCAGCCGGCTGTTGTTCCTGGAGATGGCCCAATTGGGCTTATAATGGCTCCTACTAGAGAGCTTGTGGTGCAGATACATTCAGACATCAAGAAGTTTTCGAAGGCGCTTGGCATCAACTGTGTTGCTATCTATGGAGGTTCTGGAGTTGCCCAGCAGATCAGTGAACTGAAGAGGGGTGCTGAAATTGTTGTTTGTACACCAGGCAGGATGATTGATATTCTTTGCACAAGCAGTGGGAAGATTACTAATCTTCGGAGAGTTACATTCTTGGTGATGGATGAAGCTGATAGGATGTTTGATATGGGTTTTGAGCCTCAGATTACTCGGATAGTTCAGAATACTCGTCCAGATAGGCAGACAGTTCTTTTCTCAGCCACTTTTCCACGTCAGGTGGAGATACTGGCCCGTAAGGTGCTGACAAAGCCTGTTGAGATCCAGGTGGGTGGGAGGAGTGTCGTCAACAAAGATATCACACAACTGGTTGAGGTGCGGCCAGAAAATGAGAGGTTCTTTAGGCTGTTGGAGCTGCTTGGAGAGTGGTTTGATAAAGGTAAAATTCTTGTTTTTGTCCATTCACAAGATAAATGTGATTCTCTACTCAAAGACCTGTTCCAGCATGGATATCCATGCCTATCCCTGCATGGTGGGAAAGACCAGACTGACCGTGAATCAACACTAGCTGATTTCAAGAGCAATGTGTGCAGCTTGCTGATTGCTACCAGTGTTGCTGCTAGGGGTTTAGATGTCAAGGAGCTTGAGCTTGTTGTGAATTATGATGTCCCGAACCACTATGAGGATTATGTTCATCGTGTTGGGCGAACTGGACGTGCTGGGAGGAAGGGATTTGCCGTGACTTTTATTTCTGAGGAAGAGGAGCGTTATGCTCCAGACCTTGTTAAAGCTTTGGAGCTCTCAGAGCAGGCTGTTCCAGAGGACCTGAAAGGTCTAGCTGATCGTTTTATGGCAAAGGTGAAGCAGGGAACAGAGCAGGCCCATGGAACAGGATATGGTGGAAGCGGTTTCAAGTTCAATGAAGAGGAGGATGAAGCACGGAAATCTGCAAAGAAGGCTCAGGCAAGGGAATATGGTTATGAGGAGGACAAGTCAGATTCAGATTCTGATGAGGAAGGAGGGGTTCGTAAGGCGGGAGGTGACCTTGCGGCACAAGCTATTGCTGCTGCTCAAGCTGCTGCTGCTATGGTTGCAGCAAAGGCTGCTAGCAATGCCAACCAGCAAACACAAGGCACTTCTGTAGGGCCCTTGCTTCCTCTAGCCATTGCTTCAAACACACAGAATAACGAGGCCACAGCACGTGCACTGCAGGCTGCATTTAACATACAGCAAAATCTGGCAAGGATACAAGCACATGCAGTCCCAGAACATTATGAGGCTGAGCTTGAGATTAATGATTTCCCACAAAATGCCCGCTGGAAGATCACTCACAAAGAAACATTGGGTCCTATCCAGGAATGGACGGGTGCTGCAATCACTACAAGGGGAACCTTTTTTCCTCAAGGAAAAATTGTTGGTGCTAATGAACGCAAGCTGTACCTGTTCATAGAGGGCCCCACTGAGCTATCTGTCAAGAAGGCGAAAGCAGAATTGAAGCGTGTCCTTGAAGATTGTGCCAACCATGCTCTGAACCTTCCTGGTTCTGCCCAAACTGGAAAGTACTCTGTTATTTGA
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| Protein seq | MGSSDEAGSSKHHRRDKEKDRERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEEQKQLDEEMETRRRRIKEWQEMKRREEETKRREQEEAGVGTSAAAAAAPAEAEDGGNAGKKWTLDGEESDEEGNQEDGKKSDDNGGSGAGAMDVDVPNGGDNANGANAMDEDEIDPLDAFMNSMVLPEVAKLESMPAANVDDKNDKSAKDAVTNGDKKGPKKVMGRIIQGEDSDSDYADDEDDEGGSEDEDDEEFMKRVKKTKAEKLAIVDHSKIDYQPFRKNFYIEVKDITKMVAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADRFMAKVKQGTEQAHGTGYGGSGFKFNEEEDEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAAMVAAKAASNANQQTQGTSVGPLLPLAIASNTQNNEATARALQAAFNIQQNLARIQAHAVPEHYEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTFFPQGKIVGANERKLYLFIEGPTELSVKKAKAELKRVLEDCANHALNLPGSAQTGKYSVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 3580283 | 3580442 | - | OsARC_08g0004070.01 | OsARC_08g0004070.02,OsARC_08g0004070.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.493778 | 0.355043 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0159900 | RBH | 4.799808 | 8.299121 | 8.987772 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g06344 | RBH | 3.972323 | 3.088064 | 1.453672 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0159900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004060 | RBH | 1.143349 | 6.481281 | 11.694591 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004120 | RBH | 1.138848 | 3.152001 | 7.505219 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004080 | RBH | 2.827880 | 6.437799 | 20.785265 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003880 | RBH | 15.418186 | 16.181643 | 33.406940 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0053000 | RBH | 9.0615505 | 19.5060615 | 19.3097475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003730 | RBH | 0.556081 | 0.883878 | 3.490994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0057700 | RBH | 9.907876 | 22.523938 | 21.9223055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003780 | RBH | 0.843852 | 0.414331 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003800 | RBH | 1.273388 | 19.419432 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0003640 | RBH | 21.485395 | 21.271276 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003890 | RBH | 2.219411 | 1.870189 | 2.791044 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003830 | RBH | 0.932162 | 8.899903 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003740 | RBH | 1.235469 | 4.616004 | 3.745946 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0003650 | SBH | 4.686070 | 23.430990 | 8.849060 |
