Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0027590 | OGI:07078940 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:28587489-28591691 | ||||||||
| Gene Symbol | C3H53, OsC3H53 | ||||||||||
| DNA seq | agaacaactcaagcctcgccgccgccgccgttcctctccgtatccgaCccccaccccggcaccagcaccgccccatggaggcggccaccgtcgccggagaaggtgaatctcaacgcaattgggacaggtgagtgattcaactcattcagagaaatacatatggtatgaggcgaaggccatgaagaaattataaaagaaaaaaagaaacttcctttttttttcttgtattgggactgcatttgctgatcagggggaccatgaacaccaacgctgacacatctccacattggcacaacagaatggtgcagcatcagcagtgagtggtccttcccctttcatcacacctacactgactgacttgttcatcttcttgtgattttacatacactacactagctaattaagccttcctctctctctctctctctctcactcaaacctgtcacttgttcttgggtccattacatatctgctgtactcactgccttgcacacagctgcaatcaggcagtagtagtgttacatgtatcttgtggttggtactagtactagtcttgtggctaaacatcacccctaatgctataaaactagtggctattttggtggtagcttatcaagagctttggggggtaattcatcaatggtggtgggtcggtgggtggtaatagtaactaagattaactaaggtgatatgatatggtagtaataggaggggctctaaatttttatctgaatggcactgcattttaaaacattggtggtgtggttggtggtggcttgattgatgctgctgctgctgcttctcttctggaggccagggcatcctctttcttctctttatggtttaataaagctatcttcttgaaaaatgaaaaagaaaaggaaagtaaaaaaaaaggggggtgactgaaactaacactatgctgcaacttctccactcttttcctataTtccactattctcTttttctttgctgctagtattcctgcaaggggcaagtgatggcaaggacagaggaaaagagagtaaggcaccatcattccaatggggggtgaaaagcaaatgattcaatactaggaagcatggagttgagagcttgatatagactttgtggaaaggcaagaggactgaggtgcttactaggattaggcagtagtagtattactcacttccattcagaacaactttacattccgatcgcgccgtgatcggaggccagcctgcatgcatatgaatgaatgatagcactcagcaaatcatggcgcccagatgcatactgtactaatttgcaatactaaaatagcacttggggccatacattattatgatgcatacctggacatggggaagaaataaggttttggtgagggcatgtccaaggcagaaggtaggagatggttagtgccgccattgctggcgccattgttgatgccaacataggtggcgctacaaccagtcgacgcggtggcggagatctccgcctcagtgggagcgaaaggatcgcgagcaaatcccgcggacttggtcggcgacgcaaacgggctgtccggcagattatgctccacactgccaaagagagcaagcacaatgggcagaggaaaaaagatcagtttggtgaaatgttacttgtctgcattgctggacgaaagctaagtgtggcgaaaataacaaatgattaaatgatgacgatgagacaatatgttaatcgcaaaattccacctttggtcactgtctgtgttagggctggaggactctccggtggattcctccttatcggctccgttgaccgccttcttgtgagcaagaaggaagccgcttcccttaccgagctcccctataagcaagcaaatccgccatggtaaacattagcaacactgcatctggcgcggcaacaggtgaaacgtcgttcggtcggatacaccaggtcctaccggaatcgggaggcgactcgccggtcgcgttggcggcggtctgagaagcgctgaaaggattgccaatgggggtcggcgccgcggcggcgcgcgactttaagtctagcagctgcagccccatgaggcggcggctgtggagctcgatcgcctgctgcagctcggcggcctgctgctgctcctccagcttcctcctcagcagcatctcattcgcgctgttggagtgctgcagcattctcgcacctgacaccattacaaacagactcatgcgatttcagcaacaatcattcacccaatcaccatgaagaagatgatcgcaaaagctcaccgagctggtgcatgtcgaaggggtctctggcatcgagtccagttggagtagtgcagctggagaagtccaccctctcgcccggctggtgctgcttcctgcaaagtaacagcaagttacaaattggttataggggatcaacctagagaggcaatgtggactgtaagtaagctcggcttgcctgtacttgtcggggaccttgcccttctccttgtatggcttgacgagcacgcgggcgtcgcagatgaagtgcgggttgcccttggcgagaatcagcttcaccgtctccgggtagacgaaggtgacgaagccgaacatgcgcttctgctggtacgggatgcgaacgtcgtggacggggccgtagatgcttcaattgagagggcatcatcagattaaagctatggcatggcggtgacggtgggcggtgggattatagtatactacctgaagtagttggagacgtcctcctcgcggaaggtgctatccgccgggaaggtgaggtaaatctggcgcgagccggggttcatcatgctcgcgaagtcggcgcgctccagccgcggccgccccatgaacttgtgcgcctcgtcgccgcctagcatcagcgccgccgctgccgccgccctgcaaatcgacggaatcggagctaagttaaagggatactggtactccaggaggagctcggaggtggaaaaagttggcacctctggctctcgttctgctgctgctgctgctggaggagcaagctcaaacacttggtggctgcggatggcgagccggggagtgagccggtgggcgagtaggggaaggcggcggcggcgaggcgctgggacttggagcggatgaggaagtcctgacactgctgctccacggcggaggggtccatcttgccggcggcgtcgtcggggaggccgccgtggacgaaccggcaagcgctgccgttcttgcagtagccgcgcgTAGTAGAGGCACGGCTTCCAGCCGAGGCCGTCGGCGCCGCCGAGGCAGAGCTCGCTGACCGACGCGCTCCGGCGGTGTCCGGGGCCACCGTTCGCCCACCCTAGGTTGTAGGAGAAAAGGCCGCCGTCGCCTCCGCCGGGGCTCCGGCACTCGCCGCCGTCGAACATGGGCATCTGGTGCCCCGCGGGGACGCCGCCCTCGTTGAGGAACGCGAGCTGGTCCTGCAGCTGGAGCTCGTCCATGAGCGGGTCGCCGCCGAAGAAGGGCGATGGCGGGCCCCCGCCGTTGGCCGGGCTGATGAGCTCGTCGCCGAGGCCGACCATCTCCTCCCCGGCGCCATTGCTGATGCTGTTGTTCCTCGAAAACACCGGGGGAGGCGCCCACGAGGAGGGGGAGGACACCGAGAGCGGCGAGGGCGCGGTGCCGCAGCGCCCGGAGTTCTGCCGCGAGAGCATGAAGGGCGAGTGGGCGGCggccgcggccgccgccacggaggtgggcgtcccgggcccggacgccgggaggaggccgagctccttcctggccttggccatgacggtgtggagcagcgcctcggggccgaaagcgaggcgtatcatctccttctcgccatggtcctggatgaggaggaagcccatgatcttggctgcgtggtccgggtcgagcgcctggatccgcgagaacaccaccttggtcgcctcgtaggcgtccatggcgagctccacagcaagcaagcaatcgagcttcttcgtcctcctcctccgctttctttaccacaacactcgttgcttcttggcttcttggcttcttgctccgctgctgctgctgagctgtgttctattaccaccactagagtgtgcagcaaagcaagctcaaagaagaagaagacgagagagagatcagtgggagcggcgccactgaggcagtgaagagcagaggaagagctccattttcccccagaggaagaagagctcgctcgcagccgagctagaac
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| CDS seq | atggacgcctacgaggcgaccaaggtggtgttctcgcggatccaggcgctcgacccggaccacgcagccaagatcatgggcttcctcctcatccaggaccatggcgagaaggagatgatacgcctcgctttcggccccgaggcgctgctccacaccgtcatggccaaggccaggaaggagctcggcctcctcccggcgtccgggcccgggacgcccacctccgtggcggcggccgcggccGCCGCCCACTCGCCCTTCATGCTCTCGCGGCAGAACTCCGGGCGCTGCGGCACCGCGCCCTCGCCGCTCTCGGTGTCCTCCCCCTCCTCGTGGGCGCCTCCCCCGGTGTTTTCGAGGAACAACAGCATCAGCAATGGCGCCGGGGAGGAGATGGTCGGCCTCGGCGACGAGCTCATCAGCCCGGCCAACGGCGGGGGCCCGCCATCGCCCTTCTTCGGCGGCGACCCGCTCATGGACGAGCTCCAGCTGCAGGACCAGCTCGCGTTCCTCAACGAGGGCGGCGTCCCCGCGGGGCACCAGATGCCCATGTTCGACGGCGGCGAGTGCCGGAGCCCCGGCGGAGGCGACGGCGGCCTTTTCTCCTACAACCTAGGGTGGGCGAACGGTGGCCCCGGACACCGCCGGAGCGCGTCGGTCAGCGAGCTCTGCCTCGGCGGCGCCGACGGCCTCGGCTGGAAGCCGTGCCTCTACTAcgcgcggctactgcaagaacggcagcgcttgccggttcgtccacggcggcctccccgacgacgccgccggcaagatggacccctccgccgtggagcagcagtgtcaggacttcctcatccgctccaagtcccagcgcctcgccgccgccgccttcccctactcgcccaccggctcactccccggctcgccatccgcagccaccaagtgtttgagcttgctcctccagcagcagcagcagcagaacgagagccagaggtgccaactttttccacctccgagctcctcctggagtaccagtatccctttaacttagctccgattccgtcgatttgcagggcggcggcagcggcggcgctgatgctaggcggcgacgaggcgcacaagttcatggggcggccgcggctggagcgcgccgacttcgcgagcatgatgaaccccggctcgcgccagatttacctcaccttcccggcggatagcaccttccgcgaggaggacgtctccaactacttcagcatctacggccccgtccacgacgttcgcatcccgtaccagcagaagcgcatgttcggcttcgtcaccttcgtctacccggagacggtgaagctgattctcgccaagggcaacccgcacttcatctgcgacgcccgcgtgctcgtcaagccatacaaggagaagggcaaggtccccgacaagaagcagcaccagccgggcgagagggtggacttctccagctgcactactccaactggactcgatgccagagaccccttcgacatgcaccagctcggtgcgagaatgctgcagcactccaacagcgcgaatgagatgctgctgaggaggaagctggaggagcagcagcaggccgccgagctgcagcaggcgatcgagctccacagccgccgcctcatggggctgcagctgctagacttaaagtcgcgcgccgccgcggcgccgacccccattggcaatcctttcagcgcttctcagaccgccgccaacgcgaccggcgagtcgcctcccgattccggggagctcggtaagggaagcggcttccttcttgctcacaagaaggcggtcaacggagccgataaggaggaatccaccggagagtcctccagccctaacacagacagtgaccaaagtgtggagcataatctgccggacagcccgtttgcgtcgccgaccaagtccgcgggatttgctcgcgatcctttcgctcccactgaggcggagatctccgccaccgcgtcgactggttgtagcgccacctatgttggcatcaacaatggcgccagcaatggcggcactaaccatctcctaccttctgccttggacatgccctcaccaaaaccttatttcttccccatgtccaggctggcctccgatcacggcgcgatcggaatgtaa
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| Protein seq | MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQMPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYARLLQERQRLPVRPRRPPRRRRRQDGPLRRGAAVSGLPHPLQVPAPRRRRLPLLAHRLTPRLAIRSHQVFELAPPAAAAAEREPEVPTFSTSELLLEYQYPFNLAPIPSICRAAAAAALMLGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDLKSRAAAAPTPIGNPFSASQTAANATGESPPDSGELGKGSGFLLAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLPDSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYVGINNGASNGGTNHLLPSALDMPSPKPYFFPMSRLASDHGAIGM |
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| Function | Zinc finger CCCH domain-containing protein 22 [UniProtKB/Swiss-Prot:Q10M00] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0027590 | OsARC_07g0027590.01 | Chr07 | 28587489 | 28591410 | - | NAM | ||
| CDS seq | atggacgcctacgaggcgaccaaggtggtgttctcgcggatccaggcgctcgacccggaccacgcagccaagatcatgggcttcctcctcatccaggaccatggcgagaaggagatgatacgcctcgctttcggccccgaggcgctgctccacaccgtcatggccaaggccaggaaggagctcggcctcctcccggcgtccgggcccgggacgcccacctccgtggcggcggccgcggccGCCGCCCACTCGCCCTTCATGCTCTCGCGGCAGAACTCCGGGCGCTGCGGCACCGCGCCCTCGCCGCTCTCGGTGTCCTCCCCCTCCTCGTGGGCGCCTCCCCCGGTGTTTTCGAGGAACAACAGCATCAGCAATGGCGCCGGGGAGGAGATGGTCGGCCTCGGCGACGAGCTCATCAGCCCGGCCAACGGCGGGGGCCCGCCATCGCCCTTCTTCGGCGGCGACCCGCTCATGGACGAGCTCCAGCTGCAGGACCAGCTCGCGTTCCTCAACGAGGGCGGCGTCCCCGCGGGGCACCAGATGCCCATGTTCGACGGCGGCGAGTGCCGGAGCCCCGGCGGAGGCGACGGCGGCCTTTTCTCCTACAACCTAGGGTGGGCGAACGGTGGCCCCGGACACCGCCGGAGCGCGTCGGTCAGCGAGCTCTGCCTCGGCGGCGCCGACGGCCTCGGCTGGAAGCCGTGCCTCTACTAcgcgcggctactgcaagaacggcagcgcttgccggttcgtccacggcggcctccccgacgacgccgccggcaagatggacccctccgccgtggagcagcagtgtcaggacttcctcatccgctccaagtcccagcgcctcgccgccgccgccttcccctactcgcccaccggctcactccccggctcgccatccgcagccaccaagtgtttgagcttgctcctccagcagcagcagcagcagaacgagagccagaggtgccaactttttccacctccgagctcctcctggagtaccagtatccctttaacttagctccgattccgtcgatttgcagggcggcggcagcggcggcgctgatgctaggcggcgacgaggcgcacaagttcatggggcggccgcggctggagcgcgccgacttcgcgagcatgatgaaccccggctcgcgccagatttacctcaccttcccggcggatagcaccttccgcgaggaggacgtctccaactacttcagcatctacggccccgtccacgacgttcgcatcccgtaccagcagaagcgcatgttcggcttcgtcaccttcgtctacccggagacggtgaagctgattctcgccaagggcaacccgcacttcatctgcgacgcccgcgtgctcgtcaagccatacaaggagaagggcaaggtccccgacaagaagcagcaccagccgggcgagagggtggacttctccagctgcactactccaactggactcgatgccagagaccccttcgacatgcaccagctcggtgcgagaatgctgcagcactccaacagcgcgaatgagatgctgctgaggaggaagctggaggagcagcagcaggccgccgagctgcagcaggcgatcgagctccacagccgccgcctcatggggctgcagctgctagacttaaagtcgcgcgccgccgcggcgccgacccccattggcaatcctttcagcgcttctcagaccgccgccaacgcgaccggcgagtcgcctcccgattccggggagctcggtaagggaagcggcttccttcttgctcacaagaaggcggtcaacggagccgataaggaggaatccaccggagagtcctccagccctaacacagacagtgaccaaagtgtggagcataatctgccggacagcccgtttgcgtcgccgaccaagtccgcgggatttgctcgcgatcctttcgctcccactgaggcggagatctccgccaccgcgtcgactggttgtagcgccacctatgttggcatcaacaatggcgccagcaatggcggcactaaccatctcctaccttctgccttggacatgccctcaccaaaaccttatttcttccccatgtccaggctggcctccgatcacggcgcgatcggaatgtaa
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| Protein seq | MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKELGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQMPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYARLLQERQRLPVRPRRPPRRRRRQDGPLRRGAAVSGLPHPLQVPAPRRRRLPLLAHRLTPRLAIRSHQVFELAPPAAAAAEREPEVPTFSTSELLLEYQYPFNLAPIPSICRAAAAAALMLGGDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDLKSRAAAAPTPIGNPFSASQTAANATGESPPDSGELGKGSGFLLAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLPDSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYVGINNGASNGGTNHLLPSALDMPSPKPYFFPMSRLASDHGAIGM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0027590 | OsARC_07g0027590.02 | Chr07 | 28587674 | 28591691 | - | IsoSeq | ||
| CDS seq | gttctagctcggctgcgagcgagctcttcttcctctgggggaaaatggagctcttcctctgctcttcactgcctcagtggcgccgctcccactgatctctctctcgtcttcttcttctttgagcttgctttgctgcacactctagtggtggtaatagaacacagctcagcagcagcagcggagcaagaagccaagaagccaagaagcaacgagtgttgtggtaaagaaagcggaggaggaggacgaagaagctcgattgcttgcttgctgtggagctcgccatggacgcctacgaggcgaccaaggtggtgttctcgcggatccaggcgctcgacccggaccacgcagccaagatcatgggcttcctcctcatccaggaccatggcgagaagg
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| Protein seq | VLARLRASSSSSGGKWSSSSALHCLSGAAPTDLSLVFFFFELALLHTLVVVIEHSSAAAAEQEAKKPRSNECCGKESGGGGRRSSIACLLWSSPWTPTRRPRWCSRGSRRSTRTTQPRSWASSSSRTMARR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 28589838 | 28589928 | - | OsARC_07g0027590.02 | OsARC_07g0027590.02,OsARC_07g0027590.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.849398 | 0.847848 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0682400 | RBH | 2.524903 | 3.839534 | 10.752971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48410 | RBH | 2.284558 | 2.550245 | 3.374367 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0682400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027950 | RBH | 2.942695 | 14.450002 | 23.248264 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028000 | RBH | 1.601344 | 6.825154 | 8.118484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027780 | RBH | 5.789593 | 10.961436 | 20.722769 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016240 | RBH | 0.053127 | 0.248509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027880 | RBH | 12.426309 | 30.952799 | 42.653637 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0470500 | RBH | 23.3798015 | 44.386715 | 29.142561 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028320 | RBH | 1.170341 | 0.883723 | 3.350162 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0484700 | RBH | 25.55303 | 24.720108 | 102.9081955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027600 | RBH | 0.426780 | 0.554226 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028060 | RBH | 1.384100 | 7.461694 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027780 | RBH | 25.981697 | 35.916985 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0028100 | RBH | 2.567808 | 2.639494 | 3.510532 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027670 | RBH | 1.874229 | 18.043051 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027740 | RBH | 1.320669 | 6.218166 | 10.013795 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027490 | RBH | 6.816236 | 17.469801 | 13.457932 |
