Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0024550 | OGI:07073420 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:26317961-26319935 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaactgtaaatacaaaacaatccaattgtacaccgaaaagagtataccgctcatccaagtatttcctttaggagttcattagtttgtgttctttttgcctttactggtaaatcgctacctcctgggcaaattggctactgacagtgtataaaagtatgatgtagacaatctaagtgtacataaatagttacctcatcttgtgttcctttgaagttatgtgttgaatgtgtaagtttgtgtcttgttttggtaaaagcatgttaagttcaccagtaatccttgcatgagcactgcccttcactgaaatgatggaaacggttccggtctctaacaatcaacttgcgatcatacaccaaggagatcaacttcatagctgaatggcaatcttcacaagctctaagattcttcgttattcgaatagttgacctcgcaggggtagttagcagcgcaaaagcaatggccagcttctcactatgttcagccaaggagcgttccttagattgctcatcaatatcttgcaataccaaacctgtcataggcttataacctgcttgttttaaccgatccatcatctcttccaacactctgtagatctccttggaccttggatgcaatctatcaccagagacaaactcatgaatcttttcatcccattcaattgaacttcttccaggaatcctctgaatattgtcccttctaatcgtcttcctcatttctgcaacaccttcccaagagtttgcctgtgcatatatatttgacaatagcacatagtgtccatcaccaagaggatccagaactcgcagtttggccatggcttcctctgcaatctccacattcttatggatgcgacaggccccaagtagtgctctccagataattgtgtcgggttcgaatgtcatgctcctgatgagttgtcttgcctcctcaacatggcctgaacgccccagaagatcaaccatacatccatagtgctcaactgttggctctataccatgaacttcattcattgatctaaaatacttcttgccttcgctcacaaggccaacatgagtacacgcgataagaacaccgacgaaggtgaccccattcggtttcatcccttcagatatcatcttcgagaacaagctgagcgactcatggccaagcccgtgattggccagtccgataatcattgaactccaagtttgcacatccttctctggcattctgtcgaacattctctgtgcactctcaatgtcaccacacttggcatacatgtcgatcagagcagtgccaagcttcaagtccagctctatcctgttgctctccacgaagcggtgtacctctgcaccaacggccagcgctcccaaatcactgcacgccgagaccacgctcaccaaggtaatgcagtccgggatgatgctggcggcgtgcatctcccgccacagctccagcgcttccttggatcgccggctcttagcgtaagcggagatcatcgagctccaggagaaggcatccctgtcctccgtcccgtcgaatatctccctcgccaagccgacctcccctctcatggcgtacccatggatcatcgtgttccaggacaccaagtccctcatcggcattccgtcgaacaccttcctggcctccgcgacctcggagcgcgagacgtacgcagcgagcatgacgttgcagaggaacacgtcgcgcaggggcgcctcgtcgaaggcgtcccgcgcgaggtcgacgcgccccgccttggcgtacatctcgacgagcgcggtgcggacgaagaggtcggcggcggcgaaccccgacctgagcgcgcgcgcgtggagcgcggcgccgacggacacgggcgccgccgcggacccgcacgcctggagcgcgacggagagcgagaaggaggtggcgaggagccgcggcgcgcgcgggaggagccctgcgaggaggcggagggactgcagcgggaggctcgcgcggaggtaggcgcgcat
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| CDS seq | atgcgcgcctacctccgcgcgagcctcccgctgcagtccctccgcctcctcgcagggctcctcccgcgcgcgccgcggctcctcgccacctccttctcgctctccgtcgcgctccaggcgtgcgggtccgcggcggcgcccgtgtccgtcggcgccgcgctccacgcgcgcgcgctcaggtcggggttcgccgccgccgacctcttcgtccgcaccgcgctcgtcgagatgtacgccaaggcggggcgcgtcgacctcgcgcgggacgccttcgacgaggcgcccctgcgcgacgtgttcctctgcaacgtcatgctcgctgcgtacgtctcgcgctccgaggtcgcggaggccaggaaggtgttcgacggaatgccgatgagggacttggtgtcctggaacacgatgatccatgggtacgccatgagaggggaggtcggcttggcgagggagatattcgacgggacggaggacagggatgccttctcctggagctcgatgatctccgcttacgctaagagccggcgatccaaggaagcgctggagctgtggcgggagatgcacgccgccagcatcatcccggactgcattaccttggtgagcgtggtctcggcgtgcagtgatttgggagcgctggccgttggtgcagaggtacaccgcttcgtggagagcaacaggatagagctggacttgaagcttggcactgctctgatcgacatgtatgccaagtgtggtgacattgagagtgcacagagaatgttcgacagaatgccagagaaggatgtgcaaacttggagttcaatgattatcggactggccaatcacgggcttggccatgagtcgctcagcttgttctcgaagatgatatctgaagggatgaaaccgaatggggtcaccttcgtcggtgttcttatcgcgtgtactcatgttggccttgtgagcgaaggcaagaagtattttagatcaatgaatgaagttcatggtatagagccaacagttgagcactatggattttaa
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| Protein seq | MRAYLRASLPLQSLRLLAGLLPRAPRLLATSFSLSVALQACGSAAAPVSVGAALHARALRSGFAAADLFVRTALVEMYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRMFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGF |
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| Function | Pentatricopeptide repeat-containing protein At4g18840 [UniProtKB/Swiss-Prot:O49399] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0024550 | OsARC_07g0024550.01 | Chr07 | 26317961 | 26319935 | - | NAM | ||
| CDS seq | atgcgcgcctacctccgcgcgagcctcccgctgcagtccctccgcctcctcgcagggctcctcccgcgcgcgccgcggctcctcgccacctccttctcgctctccgtcgcgctccaggcgtgcgggtccgcggcggcgcccgtgtccgtcggcgccgcgctccacgcgcgcgcgctcaggtcggggttcgccgccgccgacctcttcgtccgcaccgcgctcgtcgagatgtacgccaaggcggggcgcgtcgacctcgcgcgggacgccttcgacgaggcgcccctgcgcgacgtgttcctctgcaacgtcatgctcgctgcgtacgtctcgcgctccgaggtcgcggaggccaggaaggtgttcgacggaatgccgatgagggacttggtgtcctggaacacgatgatccatgggtacgccatgagaggggaggtcggcttggcgagggagatattcgacgggacggaggacagggatgccttctcctggagctcgatgatctccgcttacgctaagagccggcgatccaaggaagcgctggagctgtggcgggagatgcacgccgccagcatcatcccggactgcattaccttggtgagcgtggtctcggcgtgcagtgatttgggagcgctggccgttggtgcagaggtacaccgcttcgtggagagcaacaggatagagctggacttgaagcttggcactgctctgatcgacatgtatgccaagtgtggtgacattgagagtgcacagagaatgttcgacagaatgccagagaaggatgtgcaaacttggagttcaatgattatcggactggccaatcacgggcttggccatgagtcgctcagcttgttctcgaagatgatatctgaagggatgaaaccgaatggggtcaccttcgtcggtgttcttatcgcgtgtactcatgttggccttgtgagcgaaggcaagaagtattttagatcaatgaatgaagttcatggtatagagccaacagttgagcactatggattttaa
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| Protein seq | MRAYLRASLPLQSLRLLAGLLPRAPRLLATSFSLSVALQACGSAAAPVSVGAALHARALRSGFAAADLFVRTALVEMYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRMFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.061375 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0636900 | RBH | 0.317509 | 0.000000 | 0.611036 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44299 | RBH | 0.271551 | 0.184647 | 0.252643 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0636900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024720 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024780 | RBH | 0.000000 | 1.586146 | 0.313708 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024640 | RBH | 0.0 | 0.000000 | 1.087013 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019080 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024680 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0434900 | RBH | 0.8098995 | 2.108205 | 1.5208545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0446100 | RBH | 0.67931 | 2.1985025 | 3.980497 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024480 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024600 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024530 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024740 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024440 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024420 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024480 | RBH | 0.0 | 0.000000 | 0.000000 |
