Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0024460 | OGI:07038690 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:26247206-26249305 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | atgctcgccgccgccgtcaaggggaggatcaaatcgcggccacggctacctcctctcgcctcgccggcgacgacttccacatgcgctcccgctcccgccgccaccgctcgccgcggctctcatgcggccgcgtctcaagtcgtctcccacgcgtcgctcctcctccggctgcagtcgtgcccggatttccaggaggcacggaggcttcacgcggcggtcctcgtcggcggccacggccacggcaccgtcctcgtcgcgcagttggtgcgcgcgtacgcgaagctcggggatgtcgcgcacgcgctgcgggtgttcgacggaatgccgaggaggaactccttcgcgtggaacgccgtgatcaagggccttgtcgacgctggtagattctcggaggcgctggagatgttttgggggatggtgaacgatggctcgatagcggtggatggtttcacgtatccgcctgtcatcaaggcgtgtgctgcgcttggagctgttgcgcaggggaggaaggtatgggagatggtggaggctgacattgccagcggtaatgcgtggcccaacgtgtttgtgcagtgcgcgcttgtggatatgtttgcaaagtgtgggtgcttggatgaagcaaggaatgtttttgagagcatgcaagtgagggatttggctgcgtggactgcgatgattggaggaactgtgcattcagggaactggcttgaggtggtggatttgttcaatcacatgagatcagaagggtttggggttgactctctaattgctgcaactgtcatttcagcgtgtgggagagcaggtgaattgcaggttggaactgcattgcatggatgtgctgtgaaaagtggagcaagtggtgatatatatgtttccaacgccttggtagatatgtactgcaaatgcggttgcatagagatggctgattgtcttttctggtctacaaattccaaagatgttgtctcctggagtagcttgattgtggggtattcacaaaatggaatgcataatgtgagtgtcagtttgttctgtgaaatgatctctttggggataaaccccaactctagtactctggcaagcatacttccttgtctttctgtgctgaagttaatcaggagtggaaaagaaattcattgcttctctataagacatggacttgagagaagtgagtttgtagtgagcgcacttatagacttgtacagcaaacaggggttgataaggttggcagaaactatattttggcttacgctggacaaagatctagccatttggaactcaatggttgcaggatatgctgtgaatggatattcagactctgcattctgcgcattgaggttattacagaaagtgggtttaaaacctgatcatgtgactgttgtttcagttcttcctttatgcaatcaacaccatatgctcatccagggtaaggaactacatgcatatgtgatcaagtattgtattaactcagtctgctcagtcaataatgcacttctagatatgtattgcaagtgtggtttcctagaagtagctaaagaggtttttcaactgatgacagaacgcaatacagttacatataacatactgatttcttcttttggaaagcataaccatgaagatcaagccctatcatttttcgatctaatgaagagagatggaattgctccagataaagtgacttttgtggcactactatcttgttgtagccatgctggtctcattgacaagggtttgcacttatatcattccatgttacatgactacaatatttctccagagaaggaacactactcatgcattgttgatctctacagcagatgtgggaagcttgatgaggcttggtgtttcatgtcaaatatggcagaagagccagaaatcgatgtccttggagggctcttggcagcatgtagagtgcataatagaatggacattgctgagctggttgggaaaagaatatttgagcaaaatcccaatgatcctggctatcatattctgctttctaatatctacgccgatgctggaatgtggtctgatgtgacaaggataagaactatgatacaagagagaaatttgaagaaggaaacaggaaatagcttgacctaa
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| CDS seq | atgctcgccgccgccgtcaaggggaggatcaaatcgcggccacggctacctcctctcgcctcgccggcgacgacttccacatgcgctcccgctcccgccgccaccgctcgccgcggctctcatgcggccgcgtctcaagtcgtctcccacgcgtcgctcctcctccggctgcagtcgtgcccggatttccaggaggcacggaggcttcacgcggcggtcctcgtcggcggccacggccacggcaccgtcctcgtcgcgcagttggtgcgcgcgtacgcgaagctcggggatgtcgcgcacgcgctgcgggtgttcgacggaatgccgaggaggaactccttcgcgtggaacgccgtgatcaagggccttgtcgacgctggtagattctcggaggcgctggagatgttttgggggatggtgaacgatggctcgatagcggtggatggtttcacgtatccgcctgtcatcaaggcgtgtgctgcgcttggagctgttgcgcaggggaggaaggtatgggagatggtggaggctgacattgccagcggtaatgcgtggcccaacgtgtttgtgcagtgcgcgcttgtggatatgtttgcaaagtgtgggtgcttggatgaagcaaggaatgtttttgagagcatgcaagtgagggatttggctgcgtggactgcgatgattggaggaactgtgcattcagggaactggcttgaggtggtggatttgttcaatcacatgagatcagaagggtttggggttgactctctaattgctgcaactgtcatttcagcgtgtgggagagcaggtgaattgcaggttggaactgcattgcatggatgtgctgtgaaaagtggagcaagtggtgatatatatgtttccaacgccttggtagatatgtactgcaaatgcggttgcatagagatggctgattgtcttttctggtctacaaattccaaagatgttgtctcctggagtagcttgattgtggggtattcacaaaatggaatgcataatttaatcaggagtggaaaagaaattcattgcttctctataagacatggacttgagagaagatatgctgtgaatggatattcagactctgcattctgcgcattgaggttattacagaaagtgggtttaaaacctgatcatgtgactgttgtttcagttcttcctttatgcaatcaacaccatatgctcatccaggagaaggaacactactcatgcattgttgatctctacagcagatgtgggaagcttgatgaggcttggtgtttcatgtcaaatatggcagaagagccagaaatcgatgtccttggagggctcttggcagcatgtagagtgcataatagaatggacattgctgagctggttgggaaaagaatatttgagcaaaatcccaatgatcctggctatcatattctgctttctaatatctacgccgatgctggaatgtggtctgatgtgacaaggataagaactatgatacaagagagaaatttgaagaaggaaacaggaaatagcttgacctaa
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| Protein seq | MLAAAVKGRIKSRPRLPPLASPATTSTCAPAPAATARRGSHAAASQVVSHASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSIAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNAWPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCIEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNLIRSGKEIHCFSIRHGLERRYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETGNSLT |
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| Function | Pentatricopeptide repeat-containing protein At2g01510, mitochondrial [UniProtKB/Swiss-Prot:Q9ZVF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0024460 | OsARC_07g0024460.01 | Chr07 | 26247206 | 26249305 | + | NAM | ||
| CDS seq | atgctcgccgccgccgtcaaggggaggatcaaatcgcggccacggctacctcctctcgcctcgccggcgacgacttccacatgcgctcccgctcccgccgccaccgctcgccgcggctctcatgcggccgcgtctcaagtcgtctcccacgcgtcgctcctcctccggctgcagtcgtgcccggatttccaggaggcacggaggcttcacgcggcggtcctcgtcggcggccacggccacggcaccgtcctcgtcgcgcagttggtgcgcgcgtacgcgaagctcggggatgtcgcgcacgcgctgcgggtgttcgacggaatgccgaggaggaactccttcgcgtggaacgccgtgatcaagggccttgtcgacgctggtagattctcggaggcgctggagatgttttgggggatggtgaacgatggctcgatagcggtggatggtttcacgtatccgcctgtcatcaaggcgtgtgctgcgcttggagctgttgcgcaggggaggaaggtatgggagatggtggaggctgacattgccagcggtaatgcgtggcccaacgtgtttgtgcagtgcgcgcttgtggatatgtttgcaaagtgtgggtgcttggatgaagcaaggaatgtttttgagagcatgcaagtgagggatttggctgcgtggactgcgatgattggaggaactgtgcattcagggaactggcttgaggtggtggatttgttcaatcacatgagatcagaagggtttggggttgactctctaattgctgcaactgtcatttcagcgtgtgggagagcaggtgaattgcaggttggaactgcattgcatggatgtgctgtgaaaagtggagcaagtggtgatatatatgtttccaacgccttggtagatatgtactgcaaatgcggttgcatagagatggctgattgtcttttctggtctacaaattccaaagatgttgtctcctggagtagcttgattgtggggtattcacaaaatggaatgcataatttaatcaggagtggaaaagaaattcattgcttctctataagacatggacttgagagaagatatgctgtgaatggatattcagactctgcattctgcgcattgaggttattacagaaagtgggtttaaaacctgatcatgtgactgttgtttcagttcttcctttatgcaatcaacaccatatgctcatccaggagaaggaacactactcatgcattgttgatctctacagcagatgtgggaagcttgatgaggcttggtgtttcatgtcaaatatggcagaagagccagaaatcgatgtccttggagggctcttggcagcatgtagagtgcataatagaatggacattgctgagctggttgggaaaagaatatttgagcaaaatcccaatgatcctggctatcatattctgctttctaatatctacgccgatgctggaatgtggtctgatgtgacaaggataagaactatgatacaagagagaaatttgaagaaggaaacaggaaatagcttgacctaa
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| Protein seq | MLAAAVKGRIKSRPRLPPLASPATTSTCAPAPAATARRGSHAAASQVVSHASLLLRLQSCPDFQEARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSIAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNAWPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCIEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNLIRSGKEIHCFSIRHGLERRYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETGNSLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.039768 | 0.018978 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0635800 | RBH | 0.115271 | 0.117822 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44170 | RBH | 0.077952 | 0.079245 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0635800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024630 | RBH | 0.484938 | 0.751467 | 3.284462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024690 | RBH | 0.434959 | 3.372666 | 0.824791 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024550 | RBH | 3.452181 | 1.906891 | 1.856833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019080 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024590 | RBH | 0.000000 | 0.000000 | 1.441131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0459100 | SBH | 0.6188405 | 1.2842735 | 0.402419 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025120 | RBH | 0.0 | 0.202625 | 0.132603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0444700 | RBH | 0.655224 | 2.45133 | 3.7549425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024370 | RBH | 0.154278 | 0.034766 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024510 | RBH | 0.223285 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024350 | RBH | 0.077016 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024330 | RBH | 0.041092 | 0.0 | 0.211389 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024390 | RBH | 0.0 | 0.0 | 0.512011 |
