Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0022250 | OGI:07068620 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:24569203-24571238 | ||||||||
| Gene Symbol | GE1, ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES | ||||||||||
| DNA seq | acgtcttcttcctcccaagaaaactcctctcacttcgcgaacgcttcccatggcgctctcctccatggccgcggcgcaagagagctccctcctcctcttcctcctcccgacgtcggccgcctccgtgttcccgccgctcatctccgtggtcgtcctcgccgcgctcctcctgtggctctcgccgggtggccccgcgtgggcgctgtcccgttgccgtggcacgccgccgccgccgggcgtggcggggggcgcggccagcgcgctgtccggccctgccgcgcaccgcgtgctcgccgggatttcgcgcgccgtcgagggcggcgcggcggtgatgtcgctctccgtcggcctcacccgcctcgtcgtggcgagccggccggagacggcgagggagatcctcgtcagcccggcgttcggcgaccgccccgtgaaggacgcggcgaggcagctgctgttccaccgcgccatggggttcgccccgtcgggcgacgcgcactggcgcgggctccgccgcgcctccgcggcgcacctcttcggcccgcgccgcgtggccgggtccgcgcccgagcgcgaggccatcggcgcccgcatagtcggcgacgtcgcctccctcatgtcccgccgcggcgaggtccccctccgccgcgtccttcacgccgcgtcgctcggccacgtcatggcgaccgtcttcggcaagcggcacggcgacatctcgatccaggacggcgagctcctggaggagatggtcaccgaagggtacgacctcctcggcaagttcaactgggccgaccacctgccattgctcaggtggctcgacctccagggcatccgccgccggtgcaacaggctagtccagaaggtggaggtgttcgtcggaaagatcatacaggagcacaaggcgaagcgagctgccggaggcgtcgccgtcgccgacggcgtcttgggcgacttcgtcgacgtcctcctcgacctccagggagaggagaagatgtcagactccgacatgatcgctgttctttgggtaagtctcctcgtcgtcgtcttcgtcgtaaagcttgagaaggaaacgtccatggcgttttcatggattggtttcttgtttttttcttcaggagatgatctttagagggacggacacggtggcgatcttgatggagtgggtgatggcgaggatggtgatgcacccggagatccaggcgaaggcgcaggcggaggtggacgccgccgtggggggacgccgcggccgcgtcgccgacggcgacgtggcgagcctcccctacatccagtccatcgtgaaggagacgctgcgcatgcacccgccgggcccgctcctgtcgtgggcgcgcctcgccgtgcacgacgcgcgcgtcggtggccacgccgtccccgccgggacgacggcgatggtgaacatgtgggcgatcgcccacgacgccgccgtctggccggagccggatgcgttccgcccggagcgcttctcggagggggaggacgtcggcgtgctcggcggcgacctccgcctcgcgccgttcggcgccggccgccgcgtctgccctggcaggatgctggcgctcgccaccgcccacctctggctcgcccagctgctgcacgccttcgactggtcccccaccgccgccggcgtcgacctgtccgagcgcctcggcatgtcgctggagatggcggcgccgctcgtgtgcaaggccgtggctagggcctgagccctagccgccgccgccgccattattgccattgatgtggctagcgacgttgtcgtgctcgcatccatactcctccataggcaactcgtctagccaatgaagaaagctactatctatctatctatcaagctagctgctactatcacaaaccgcatttcggcatcatcttaaattagctcttaggggtgtaggcgattttggtttcccccaaaaatttgctttgccagtcttttggtttaaatcgaggcattagttgtgaaacatcatgagaagttatttaaatctgaggaattttgtttgaaccttttctggtgtgct
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| CDS seq | atggcgctctcctccatggccgcggcgcaagagagctccctcctcctcttcctcctcccgacgtcggccgcctccgtgttcccgccgctcatctccgtggtcgtcctcgccgcgctcctcctgtggctctcgccgggtggccccgcgtgggcgctgtcccgttgccgtggcacgccgccgccgccgggcgtggcggggggcgcggccagcgcgctgtccggccctgccgcgcaccgcgtgctcgccgggatttcgcgcgccgtcgagggcggcgcggcggtgatgtcgctctccgtcggcctcacccgcctcgtcgtggcgagccggccggagacggcgagggagatcctcgtcagcccggcgttcggcgaccgccccgtgaaggacgcggcgaggcagctgctgttccaccgcgccatggggttcgccccgtcgggcgacgcgcactggcgcgggctccgccgcgcctccgcggcgcacctcttcggcccgcgccgcgtggccgggtccgcgcccgagcgcgaggccatcggcgcccgcatagtcggcgacgtcgcctccctcatgtcccgccgcggcgaggtccccctccgccgcgtccttcacgccgcgtcgctcggccacgtcatggcgaccgtcttcggcaagcggcacggcgacatctcgatccaggacggcgagctcctggaggagatggtcaccgaagggtacgacctcctcggcaagttcaactgggccgaccacctgccattgctcaggtggctcgacctccagggcatccgccgccggtgcaacaggctagtccagaaggtggaggtgttcgtcggaaagatcatacaggagcacaaggcgaagcgagctgccggaggcgtcgccgtcgccgacggcgtcttgggcgacttcgtcgacgtcctcctcgacctccagggagaggagaagatgtcagactccgacatgatcgctgttctttgggagatgatctttagagggacggacacggtggcgatcttgatggagtgggtgatggcgaggatggtgatgcacccggagatccaggcgaaggcgcaggcggaggtggacgccgccgtggggggacgccgcggccgcgtcgccgacggcgacgtggcgagcctcccctacatccagtccatcgtgaaggagacgctgcgcatgcacccgccgggcccgctcctgtcgtgggcgcgcctcgccgtgcacgacgcgcgcgtcggtggccacgccgtccccgccgggacgacggcgatggtgaacatgtgggcgatcgcccacgacgccgccgtctggccggagccggatgcgttccgcccggagcgcttctcggagggggaggacgtcggcgtgctcggcggcgacctccgcctcgcgccgttcggcgccggccgccgcgtctgccctggcaggatgctggcgctcgccaccgcccacctctggctcgcccagctgctgcacgccttcgactggtcccccaccgccgccggcgtcgacctgtccgagcgcctcggcatgtcgctggagatggcggcgccgctcgtgtgcaaggccgtggctagggcctga
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| Protein seq | MALSSMAAAQESSLLLFLLPTSAASVFPPLISVVVLAALLLWLSPGGPAWALSRCRGTPPPPGVAGGAASALSGPAAHRVLAGISRAVEGGAAVMSLSVGLTRLVVASRPETAREILVSPAFGDRPVKDAARQLLFHRAMGFAPSGDAHWRGLRRASAAHLFGPRRVAGSAPEREAIGARIVGDVASLMSRRGEVPLRRVLHAASLGHVMATVFGKRHGDISIQDGELLEEMVTEGYDLLGKFNWADHLPLLRWLDLQGIRRRCNRLVQKVEVFVGKIIQEHKAKRAAGGVAVADGVLGDFVDVLLDLQGEEKMSDSDMIAVLWEMIFRGTDTVAILMEWVMARMVMHPEIQAKAQAEVDAAVGGRRGRVADGDVASLPYIQSIVKETLRMHPPGPLLSWARLAVHDARVGGHAVPAGTTAMVNMWAIAHDAAVWPEPDAFRPERFSEGEDVGVLGGDLRLAPFGAGRRVCPGRMLALATAHLWLAQLLHAFDWSPTAAGVDLSERLGMSLEMAAPLVCKAVARA |
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| Function | Cytochrome P450 78A5 [UniProtKB/Swiss-Prot:Q9LMX7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0022250 | OsARC_07g0022250.01 | Chr07 | 24569203 | 24571238 | + | NAM | ||
| CDS seq | atggcgctctcctccatggccgcggcgcaagagagctccctcctcctcttcctcctcccgacgtcggccgcctccgtgttcccgccgctcatctccgtggtcgtcctcgccgcgctcctcctgtggctctcgccgggtggccccgcgtgggcgctgtcccgttgccgtggcacgccgccgccgccgggcgtggcggggggcgcggccagcgcgctgtccggccctgccgcgcaccgcgtgctcgccgggatttcgcgcgccgtcgagggcggcgcggcggtgatgtcgctctccgtcggcctcacccgcctcgtcgtggcgagccggccggagacggcgagggagatcctcgtcagcccggcgttcggcgaccgccccgtgaaggacgcggcgaggcagctgctgttccaccgcgccatggggttcgccccgtcgggcgacgcgcactggcgcgggctccgccgcgcctccgcggcgcacctcttcggcccgcgccgcgtggccgggtccgcgcccgagcgcgaggccatcggcgcccgcatagtcggcgacgtcgcctccctcatgtcccgccgcggcgaggtccccctccgccgcgtccttcacgccgcgtcgctcggccacgtcatggcgaccgtcttcggcaagcggcacggcgacatctcgatccaggacggcgagctcctggaggagatggtcaccgaagggtacgacctcctcggcaagttcaactgggccgaccacctgccattgctcaggtggctcgacctccagggcatccgccgccggtgcaacaggctagtccagaaggtggaggtgttcgtcggaaagatcatacaggagcacaaggcgaagcgagctgccggaggcgtcgccgtcgccgacggcgtcttgggcgacttcgtcgacgtcctcctcgacctccagggagaggagaagatgtcagactccgacatgatcgctgttctttgggagatgatctttagagggacggacacggtggcgatcttgatggagtgggtgatggcgaggatggtgatgcacccggagatccaggcgaaggcgcaggcggaggtggacgccgccgtggggggacgccgcggccgcgtcgccgacggcgacgtggcgagcctcccctacatccagtccatcgtgaaggagacgctgcgcatgcacccgccgggcccgctcctgtcgtgggcgcgcctcgccgtgcacgacgcgcgcgtcggtggccacgccgtccccgccgggacgacggcgatggtgaacatgtgggcgatcgcccacgacgccgccgtctggccggagccggatgcgttccgcccggagcgcttctcggagggggaggacgtcggcgtgctcggcggcgacctccgcctcgcgccgttcggcgccggccgccgcgtctgccctggcaggatgctggcgctcgccaccgcccacctctggctcgcccagctgctgcacgccttcgactggtcccccaccgccgccggcgtcgacctgtccgagcgcctcggcatgtcgctggagatggcggcgccgctcgtgtgcaaggccgtggctagggcctga
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| Protein seq | MALSSMAAAQESSLLLFLLPTSAASVFPPLISVVVLAALLLWLSPGGPAWALSRCRGTPPPPGVAGGAASALSGPAAHRVLAGISRAVEGGAAVMSLSVGLTRLVVASRPETAREILVSPAFGDRPVKDAARQLLFHRAMGFAPSGDAHWRGLRRASAAHLFGPRRVAGSAPEREAIGARIVGDVASLMSRRGEVPLRRVLHAASLGHVMATVFGKRHGDISIQDGELLEEMVTEGYDLLGKFNWADHLPLLRWLDLQGIRRRCNRLVQKVEVFVGKIIQEHKAKRAAGGVAVADGVLGDFVDVLLDLQGEEKMSDSDMIAVLWEMIFRGTDTVAILMEWVMARMVMHPEIQAKAQAEVDAAVGGRRGRVADGDVASLPYIQSIVKETLRMHPPGPLLSWARLAVHDARVGGHAVPAGTTAMVNMWAIAHDAAVWPEPDAFRPERFSEGEDVGVLGGDLRLAPFGAGRRVCPGRMLALATAHLWLAQLLHAFDWSPTAAGVDLSERLGMSLEMAAPLVCKAVARA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0603700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g41240 | RBH | 0.0 | 0.0 | 0.145769 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0603700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022450 | RBH | 0.0 | 0.0 | 0.328063 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022320 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021780 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022400 | RBH | 0.0 | 0.0 | 1.162733 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0405400 | RBH | 0.020791 | 0.0176175 | 0.0273985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0416900 | RBH | 0.045866 | 0.0181455 | 0.041609 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022300 | RBH | 0.0 | 1.553234 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022050 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0022080 | RBH | 0.0 | 0.0 | 0.807111 |
