Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0021560 | OGI:07067330 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:24010831-24015856 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggagccaatcttagtagttagtcacagaagactgaacatggagaatattcaaaacaggttaggtacacgcaacagtattcaactggatacatgtagcaggacaaaaaaaaagtctctaaaatcgaccggcttctcacacgaccagccttggaagatcaagatctacaccagttacagctacaaaatccactagagtatgtctaaaggttacatctggggtctgaactctgaacgagattgatagccagattgtgctttatcataaccagcgtagcatagcaaatgcaagttataaccttggtagtgaagggtggtaaccagaataacccgaatagctactcgaagtagactgccctgctgcatcgttgtagcttccgtagccgcctgctgttggcggggcaccaggtccaccataagctactttgaactgattcgagttgtatgatgcaggagctactgagcctggtgtgtactggtatggctttgaggcactgtatggttcgctgtaagaagcataagcaggaggatcatatgttgcagagggtgcagtgtaatggtaccgatctgcatgtccatatcgatcaggataggaaggcattggtggagggggccgctgccaagtaccagccgggcctgaaggtctgcgaccagctgaaccaacaggatttggtggcctgcgagcagctgaattgccgaaagtgcgaggcttctttgcattatggcgcccagcttccaatggccttttctcacccttagattttagctcagcaacacgcttctggagaggtccaagaggatagtccttctgaagcttatactcttcaatgcattttattacagccctcaatgcaagtagttcccgagtctttgggtcatcctgaaaaaggatacaaacataaatgtaaaaccagaaaagaagattgggaaacagacatgaaatcattcaagtacgaagtaatatacaataatctacaatgttcaatagtactatcaagtagaaaagcagttgacagtcaaccaaacaagtccgcactgcattacagtcataagcactaaacagtggatgttgaaagtaaatttccatctgcgaagcaagatgaattcaatccaataatcctcgcagcaataaccaaccttgcaacaatgattcctgacttcaattgttttgtttatatgacaactcacaaattgctggtccatttgcaatacgcttaatagtatacttccttggtgaaacagtacagtggatgaactgtgacctaaacattgggaaattatccccatctcaaacatggtggaaagaccataccttcagagaagccgcgttgccgtccccattattgccaagtgaatcttttaattcctccacatatgtcttcagcagaggtgcaggagggaagctctcagaaagcccaaaggcatgtataaattgaactgcatcaatttgcctgtgtctattaaccaattccttgataatatctgcaaaatattgtcaacagaaggatcataaatttccaaacttatgcaaattaccaggttttcacataaagcaggaaggtttcaattccctagaaagctctgtggcttagtaataaatcaggaatggctgtggtctggtttaagggatgtgaacgccttgtggcattctgaggggataccaacctggtattctctcattaagacaaagggagcgacaaagctcagcagtctgcttgcgacgagagacagcaactacaagcttgcatagttcatcctcgtcaagcaccgaatcaacattaaatgttgtaagaagctgcaggaatgcctgtgcttccaatgagtagccatcagaagcatcgaggtcaacctcagctagcttactcttccactcttctgcaatcgccttggccagctccctaatttcggagctccaagggtggttgtcacctggctccttcgtagctagtgcaggtgttatagcttccatcaaaataatgcagcttctacgctggccttggagaataatctgtttattcccaggtgaactagtatggtcagatgggaagaaaccctccaaggaaccaagcacaaagcatgcagggtcagtagcacatcttagtgcagcagaaagttcatcacgaaggctagaaagttttttccaattttctgaaagaaatttcagaaggcctgctgtatccatctgctcacatagttgcttcaatacaggacgtggcttaacatcaacaggtgaagcttcagatggttcacccagcccactagcagttgtattctcctctgaagcacacaacacattcatgtcattggttgaggttcttacctttttatctttgcttccattggcatcaagtataccagcaagctccaccttatatttttgtcgcacctctgaaagggcagagacagctgtatcccttagctcctgaaactggttcaggaaagcacgctcttttgcagaaacattagcttccttctctgcgataagcctacaggattcagctttcttttcttctaatgccttctgcttctctgcaagttcatcgcacttacttttgtacgacttctcaaggttcaggaaatgtgctttgatatcttcccaattgatgccgttttgcaattgcaaggatgtttctgtgtgagatttcagcttgccaaatacttcagcaagctgttctagcaatggaattgttgactcagaactaccagaaatgtgagaagtatcttctgtggccatttttcaacaaatgatgacctggagaaatgtaggattagaaccaaagttaaaaggagctaagtattatgttttatatatagaggtacagatcacgttataactagcatgtctatggaatttattgatgtaccattgtttccaaaatagaaagcatggacaaataaagaaataaactaataccataatacggcaatagcacattacaaaagtacagcccaaagccaaaaggtcaagtgaagatcggaaaagttgagaatatacaagtcctaggagtatttagcttctctgagataatatgaatcaattggtaaaaaaaatggtctgcaagttctaagtaattgcagtaactcgtaaaaatatgaaggcaaaacaatgttttaaaaagcagccacacagaccgcttatgcggccgtataagcgtaacaggtcatcagaccttgccgattattgctgtacggtgcatttacaaggttaagcgggccacatattcggatatgtggcctgcttaccgtgtaggcaatttggccttatggcttaggtacccttttgtgttctgccatagtgccattagtatttgctatttgctctatatcctctatgaactatgatggtgtgatcagaagtttggaacctataatatatataatgtgtgaatcacaacatctttattgctaatttactgcatttatgtttttgcttcattacattgagtcagtgacttaaattttggtcatccttgggtcctctttggtagttggttcttcatgagtctttcctctttactgatcctttaagcctacgttcattatccataaataaataaagatggatcagatgtcaataatctgtcttggtatacgactttaaaaccgcttaaaaggccactttccgcataagctctacaaggtggaatgaccacattgcaccgcttaccactatttaaaacattgaggcaaaatcaatacaatatgttctaactttacaaatgagaagcatgttttagcaaggaaggaaaacagtgcctagtcataaacgttgtttggttgtttcctggactatgaaatcagtttctgtacaacgattttcaatatatttttcatataatcctgtttggtacttgcaaccgaccaaagtataactaaaaccaaatttgtagaaaaatcagaatattgtggttaaagcttttaacaaaattaatgctagaagcttttaacagaaagtgcaaatccaatccttgttctggctggctaaacattagatcatgaggacaatcatttcagcattgacagtttccaccactgtacatactgtttcacattaaatatgatgatccctgaagaagaaagcacgacattgaagtggacattgttgtgtccgcatctagtattaatttttttttcgcgaacacgcaaaaggattgcacgtaaatatattagaagggaaaagaggttttttacacaacgcaatcaagtgtccgcatctagtagacgatttcaaaacgtgggaaccaaagctctcattgccagtgcgtgccttactgtttatggcgttatttctgcgggaattcatcaaaactaatctaacaattccactgttgaaggattctgagaaatcatgtcaacattgccatataatcatagctgcgacctattttttacattcttctgtgtacagttttttgtcaggggcgaaccaacttgggacatggggttcagttgaatcgcaaacttttcggggaacaaataaactgttacttgtattaaggttaaggctctgaaattaagagaagagcctcttccagatctagaagagaagctagggttaacgaacgcacgcaagcaaattccagacaaaagtagtcccgctgggagagagagagatgaatcagatagaggatgtggatgctcaccaggatcccctctcctgctctgctcggcagatggagatcgccgcccctcccctgttcagcagcgagacggcgcaaagagcggaggagacgagacgggagattttcttttacgccagggaaggggaagatactcgtgggtgcgtcgggcgagccgccgagcagcggaggcagaccgccggcgatggcgaggcgccgagggacgacgggcgaggagatgcctccgagggccgcggggaggatgcgcggcgtcggcgcggtggggcggcgtcgggggctaccggactagggttgggttcgccggagcctgcgccctgagaggcttgggatggggatgcattctgtggctaacatgttacggtgagatttgcttcggcccaatcaaggcc
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| CDS seq | atggccacagaagatacttctcacatttctggtagttctgagtcaacaattccattgctagaacagcttgctgaagtatttggcaagctgaaatctcacacagaaacatccttgcaattgcaaaacggcatcaattgggaagatatcaaagcacatttcctgaaccttgagaagtcgtacaaaagtaagtgcgatgaacttgcagagaagcagaaggcattagaagaaaagaaagctgaatcctgtaggcttatcgcagagaaggaagctaatgtttctgcaaaagagcgtgctttcctgaaccagtttcaggagctaagggatacagctgtctctgccctttcagaggtgcgacaaaaatataaggtggagcttgctggtatacttgatgccaatggaagcaaagataaaaaggtaagaacctcaaccaatgacatgaatgtgttgtgtgcttcagaggagaatacaactgctagtgggctgggtgaaccatctgaagcttcacctgttgatgttaagccacgtcctgtattgaagcaactatgtgagcagatggatacagcaggccttctgaaatttctttcagaaaattggaaaaaactttctagccttcgtgatgaactttctgctgcactaagatgtgctactgaccctgcatgctttgtgcttggttccttggagggtttcttcccatctgaccatactagttcacctgggaataaacagattattctccaaggccagcgtagaagctgcattattttgatggaagctataacacctgcactagctacgaaggagccaggtgacaaccacccttggagctccgaaattagggagctggccaaggcgattgcagaagagtggaagagtaagctagctgaggttgacctcgatgcttctgatggctactcattggaagcacaggcattcctgcagcttcttacaacatttaatgttgattcggtgcttgacgaggatgaactatgcaagcttgtagttgctgtctctcgtcgcaagcagactgctgagctttgtcgctccctttgtcttaatgagagaataccagatattatcaaggaattggttaatagacacaggcaaattgatgcagttcaatttatacatgcctttgggctttctgagagcttccctcctgcacctctgctgaagacatatgtggaggaattaaaagattcacttggcaataatggggacggcaacgcggcttctctgaaggatgacccaaagactcgggaactacttgcattgagggctgtaataaaatgcattgaagagtataagcttcagaaggactatcctcttggacctctccagaagcgtgttgctgagctaaaatctaagggtgagaaaaggccattggaagctgggcgccataatgcaaagaagcctcgcactttcggcaattcagctgctcgcaggccaccaaatcctgttggttcagctggtcgcagaccttcaggcccggctggtacttggcagcggccccctccaccaatgccttcctatcctgatcgatatggacatgcagatcggtaccattacactgcaccctctgcaacatatgatcctcctgcttatgcttcttacagcgaaccatacagtgcctcaaagccataccagtacacaccaggctcagtagctcctgcatcatacaactcgaatcagttcaaagtagcttatggtggacctggtgccccgccaacagcaggcggctacggaagctacaacgatgcagcagggcagtctacttcgagtagctattcgggttattctggttaccacccttcactaccaaggttataa
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| Protein seq | MATEDTSHISGSSESTIPLLEQLAEVFGKLKSHTETSLQLQNGINWEDIKAHFLNLEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEVRQKYKVELAGILDANGSKDKKVRTSTNDMNVLCASEENTTASGLGEPSEASPVDVKPRPVLKQLCEQMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPACFVLGSLEGFFPSDHTSSPGNKQIILQGQRRSCIILMEAITPALATKEPGDNHPWSSEIRELAKAIAEEWKSKLAEVDLDASDGYSLEAQAFLQLLTTFNVDSVLDEDELCKLVVAVSRRKQTAELCRSLCLNERIPDIIKELVNRHRQIDAVQFIHAFGLSESFPPAPLLKTYVEELKDSLGNNGDGNAASLKDDPKTRELLALRAVIKCIEEYKLQKDYPLGPLQKRVAELKSKGEKRPLEAGRHNAKKPRTFGNSAARRPPNPVGSAGRRPSGPAGTWQRPPPPMPSYPDRYGHADRYHYTAPSATYDPPAYASYSEPYSASKPYQYTPGSVAPASYNSNQFKVAYGGPGAPPTAGGYGSYNDAAGQSTSSSYSGYSGYHPSLPRL |
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| Function | FRIGIDA-like protein 3 [UniProtKB/Swiss-Prot:Q67ZB3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0021560 | OsARC_07g0021560.01 | Chr07 | 24010831 | 24015856 | - | NAM | ||
| CDS seq | atggccacagaagatacttctcacatttctggtagttctgagtcaacaattccattgctagaacagcttgctgaagtatttggcaagctgaaatctcacacagaaacatccttgcaattgcaaaacggcatcaattgggaagatatcaaagcacatttcctgaaccttgagaagtcgtacaaaagtaagtgcgatgaacttgcagagaagcagaaggcattagaagaaaagaaagctgaatcctgtaggcttatcgcagagaaggaagctaatgtttctgcaaaagagcgtgctttcctgaaccagtttcaggagctaagggatacagctgtctctgccctttcagaggtgcgacaaaaatataaggtggagcttgctggtatacttgatgccaatggaagcaaagataaaaaggtaagaacctcaaccaatgacatgaatgtgttgtgtgcttcagaggagaatacaactgctagtgggctgggtgaaccatctgaagcttcacctgttgatgttaagccacgtcctgtattgaagcaactatgtgagcagatggatacagcaggccttctgaaatttctttcagaaaattggaaaaaactttctagccttcgtgatgaactttctgctgcactaagatgtgctactgaccctgcatgctttgtgcttggttccttggagggtttcttcccatctgaccatactagttcacctgggaataaacagattattctccaaggccagcgtagaagctgcattattttgatggaagctataacacctgcactagctacgaaggagccaggtgacaaccacccttggagctccgaaattagggagctggccaaggcgattgcagaagagtggaagagtaagctagctgaggttgacctcgatgcttctgatggctactcattggaagcacaggcattcctgcagcttcttacaacatttaatgttgattcggtgcttgacgaggatgaactatgcaagcttgtagttgctgtctctcgtcgcaagcagactgctgagctttgtcgctccctttgtcttaatgagagaataccagatattatcaaggaattggttaatagacacaggcaaattgatgcagttcaatttatacatgcctttgggctttctgagagcttccctcctgcacctctgctgaagacatatgtggaggaattaaaagattcacttggcaataatggggacggcaacgcggcttctctgaaggatgacccaaagactcgggaactacttgcattgagggctgtaataaaatgcattgaagagtataagcttcagaaggactatcctcttggacctctccagaagcgtgttgctgagctaaaatctaagggtgagaaaaggccattggaagctgggcgccataatgcaaagaagcctcgcactttcggcaattcagctgctcgcaggccaccaaatcctgttggttcagctggtcgcagaccttcaggcccggctggtacttggcagcggccccctccaccaatgccttcctatcctgatcgatatggacatgcagatcggtaccattacactgcaccctctgcaacatatgatcctcctgcttatgcttcttacagcgaaccatacagtgcctcaaagccataccagtacacaccaggctcagtagctcctgcatcatacaactcgaatcagttcaaagtagcttatggtggacctggtgccccgccaacagcaggcggctacggaagctacaacgatgcagcagggcagtctacttcgagtagctattcgggttattctggttaccacccttcactaccaaggttataa
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| Protein seq | MATEDTSHISGSSESTIPLLEQLAEVFGKLKSHTETSLQLQNGINWEDIKAHFLNLEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEVRQKYKVELAGILDANGSKDKKVRTSTNDMNVLCASEENTTASGLGEPSEASPVDVKPRPVLKQLCEQMDTAGLLKFLSENWKKLSSLRDELSAALRCATDPACFVLGSLEGFFPSDHTSSPGNKQIILQGQRRSCIILMEAITPALATKEPGDNHPWSSEIRELAKAIAEEWKSKLAEVDLDASDGYSLEAQAFLQLLTTFNVDSVLDEDELCKLVVAVSRRKQTAELCRSLCLNERIPDIIKELVNRHRQIDAVQFIHAFGLSESFPPAPLLKTYVEELKDSLGNNGDGNAASLKDDPKTRELLALRAVIKCIEEYKLQKDYPLGPLQKRVAELKSKGEKRPLEAGRHNAKKPRTFGNSAARRPPNPVGSAGRRPSGPAGTWQRPPPPMPSYPDRYGHADRYHYTAPSATYDPPAYASYSEPYSASKPYQYTPGSVAPASYNSNQFKVAYGGPGAPPTAGGYGSYNDAAGQSTSSSYSGYSGYHPSLPRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.245790 | 0.358794 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0592300 | RBH | 1.865719 | 3.058635 | 4.273525 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g40270 | RBH | 1.167815 | 1.895751 | 1.051690 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0592300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021760 | RBH | 1.067654 | 3.075155 | 4.721773 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021790 | RBH | 0.153558 | 2.556725 | 2.081597 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021680 | RBH | 1.266081 | 3.411468 | 6.180266 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0021640 | RBH | 4.036345 | 6.511076 | 15.009603 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0395900 | RBH | 7.4196905 | 12.807751 | 29.047657 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022080 | RBH | 0.215049 | 0.404070 | 1.137195 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0408800 | RBH | 7.984814 | 17.218674 | 19.638418 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021380 | RBH | 0.164113 | 0.381197 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021530 | RBH | 0.361476 | 7.600152 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0021430 | RBH | 4.984726 | 5.585224 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0021670 | RBH | 0.918310 | 0.203134 | 0.913287 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021410 | RBH | 0.892676 | 4.190208 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021300 | RBH | 0.351932 | 1.069127 | 2.538007 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021370 | RBH | 1.706697 | 3.167506 | 5.831091 |
