Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0019790 | OGI:07063950 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:22624469-22626720 | ||||||||
| Gene Symbol | C3H50, OsC3H50, OsTZF6, OsCCCH-Zn-6, DLN188, OsDLN188 | ||||||||||
| DNA seq | gtggggggatgggctgatctccttccgagaaccgggagctcggatgcgtcgagttggttttgtgctccttttgctttccctttttctggattcgggtttccatattggaaggtttcttgatctcgatttcgtggcgtgagctggttgctgaatcttatatagctttccttcttcttcttcttctagcggttgctacagatgcgttgagctttggttaatctatccggcgagagataatgggcgagcttgctgatctcgttgtcgtgccgtcgcagccgccgctcgccggcggccggcgggacaggctggcggcgctgctggagctcgcggcggcggatgatgttgatgggctcaggggggcgctcgcggagggaggcgaggaggcggcggagttggctgatggggtcgggctgtggtatggtcggagcaaggcgtacgaggcgcgcacgccgctgatggtggcggcgacgtacggcagcgccggggtggtctcgctgctggtgggcctcggcggttgcgtcgacgtcaaccgtcgccctggagccgacggcgccaccgcgctccactgcgccgcctccggtggctcgcgcaacgccgtcgctgttgtcaagctgcttttggccgctggcgccgatccggccacccccgattccgccggccgcttccccgccgacgtcatcctagctcctccggcttcgccagatgcccttggcgatctcgaggtgctcctcggccgccgccaagcactcgccgtggcgacctcggtggcttcaggttcgtcatcccctccgctctcgtcctcaccagatgagggcaacaggtcgccctcgtcgcgttcgtcgtcgctgtcccccatcactgtggatcgtgggaagaaggagtatccggtggatccaactctgccggacatcaagagcagcgtgtatgcttcggatgagttccgcatgtttgcgttcaaggtccggccctgctcccgtgcctactcacacgactggactgagtgcccgtttgtgcaccccggcgagaacgcccgccgccgtgatccccgcaagcacccatacactgctgtgccttgccccaactttcgccggcctggtggctgccctagcggcgatagctgtgagttctcgcatggcgtgtttgagagctggctacacccatcacagtatcgcacaaggctctgcaaggagggagcagcttgcgcccgtcgcatttgcttctttgcccatgatgaggatgagctccgccatgtgcctcacaacagtggtgccggcctgctgtctccccgcgcttcttcatccattgatatgactgctgcagctgcgctcgggcttcttccaggttctcctaccagacactttgcaccgccgcctgtgtcaccatctgctgggagcaatggaggagctgctgctgcgcattggctccaaggcagtaggctgcgttcttctttcaatgcaagggatgctgctgttgatgaccttggcatgctcctcgaatgggaatcacaataccttggggcactctgcctgccacccagcagccgcccccaaccacgcctttcagctggtctgagtatcaggccaacaattgctccatccaatcttgaagacatgtatgcttcagacatggcaatgtctccgaggttccctaatgaccaaggtcactcagtctactcaccagcccacaaatcagccctcctcaacaagcttcatcaacagaagggcctcttatcacctgttaacaccaacagaatgtactccccaagggctcttgatccgtcatctttggcacattctccatttggtggcatgtctccccggtccccccgtaccatggaacctacatcacccctaagtgctcgtgtaggagcccctgccacacagcgtgagatgtttgagcaattcgcttccttgaataagcatcagctgccttctgttggttcaccacggaattccactgcttggggcaccgtggggtccccgatgggtaaggttgactggggtgtcgatagcgaggagctagtccgcttgagacgccctgcacaaccagggtttggagaagatgagacagatgtatcatgggtgcagtcactggtaagcaatgctgagcttaatggcaagaggggcgaagtccaaggcatgcctggtacttctgcattgatgaacaggcctgacctgaacaatcagggtgacttgttggaccagacggtgatcggtgcttggcttgagcagatgcacctggatcagaagtga
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| CDS seq | atgggcgagcttgctgatctcgttgtcgtgccgtcgcagccgccgctcgccggcggccggcgggacaggctggcggcgctgctggagctcgcggcggcggatgatgttgatgggctcaggggggcgctcgcggagggaggcgaggaggcggcggagttggctgatggggtcgggctgtggtatggtcggagcaaggcgtacgaggcgcgcacgccgctgatggtggcggcgacgtacggcagcgccggggtggtctcgctgctggtgggcctcggcggttgcgtcgacgtcaaccgtcgccctggagccgacggcgccaccgcgctccactgcgccgcctccggtggctcgcgcaacgccgtcgctgttgtcaagctgcttttggccgctggcgccgatccggccacccccgattccgccggccgcttccccgccgacgtcatcctagctcctccggcttcgccagatgcccttggcgatctcgaggtgctcctcggccgccgccaagcactcgccgttctcctaccagacactttgcaccgccgcctgtgtcaccatctgctgggagcaatggaggagctgctgctgcgcattggctccaaggcagtaggctgcgttcttctttcaatgcaagggatgctgctgttgatgaccttggcatgctcctcgaatgggaatcacaataccttggggcactctgcctgccacccagcagccgcccccaaccacgcctttcagctggtctga
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| Protein seq | MGELADLVVVPSQPPLAGGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRQALAVLLPDTLHRRLCHHLLGAMEELLLRIGSKAVGCVLLSMQGMLLLMTLACSSNGNHNTLGHSACHPAAAPNHAFQLV |
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| Function | Zinc finger CCCH domain-containing protein 50 [UniProtKB/Swiss-Prot:Q84SL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0019790 | OsARC_07g0019790.02 | Chr07 | 22626079 | 22626720 | + | NAM | ||
| CDS seq | atgtatgcttcagacatggcaatgtctccgaggttccctaatgaccaaggtcactcagtctactcaccagcccacaaatcagccctcctcaacaagcttcatcaacagaagggcctcttatcacctgttaacaccaacagaatgtactccccaagggctcttgatccgtcatctttggcacattctccatttggtggcatgtctccccggtccccccgtaccatggaacctacatcacccctaagtgctcgtctgccttctgttggttcaccacggaattccactgcttggggcaccgtggggtccccgatgggtaaggttgactggggtgtcgatagcgaggagctagtccgcttgagacgccctgcacaaccagggtttggagaagatgagacagatgtatcatgggtgcagtcactggtaagcaatgctgagcttaatggcaagaggggcgaagtccaaggcatgcctggtacttctgcattgatgaacaggcctgacctgaacaatcagggtgacttgttggaccagacggtgatcggtgcttggcttgagcagatgcacctggatcagaagtga
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| Protein seq | MYASDMAMSPRFPNDQGHSVYSPAHKSALLNKLHQQKGLLSPVNTNRMYSPRALDPSSLAHSPFGGMSPRSPRTMEPTSPLSARLPSVGSPRNSTAWGTVGSPMGKVDWGVDSEELVRLRRPAQPGFGEDETDVSWVQSLVSNAELNGKRGEVQGMPGTSALMNRPDLNNQGDLLDQTVIGAWLEQMHLDQK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0019790 | OsARC_07g0019790.01 | Chr07 | 22624469 | 22626653 | + | NAM | ||
| CDS seq | atgggcgagcttgctgatctcgttgtcgtgccgtcgcagccgccgctcgccggcggccggcgggacaggctggcggcgctgctggagctcgcggcggcggatgatgttgatgggctcaggggggcgctcgcggagggaggcgaggaggcggcggagttggctgatggggtcgggctgtggtatggtcggagcaaggcgtacgaggcgcgcacgccgctgatggtggcggcgacgtacggcagcgccggggtggtctcgctgctggtgggcctcggcggttgcgtcgacgtcaaccgtcgccctggagccgacggcgccaccgcgctccactgcgccgcctccggtggctcgcgcaacgccgtcgctgttgtcaagctgcttttggccgctggcgccgatccggccacccccgattccgccggccgcttccccgccgacgtcatcctagctcctccggcttcgccagatgcccttggcgatctcgaggtgctcctcggccgccgccaagcactcgccgttctcctaccagacactttgcaccgccgcctgtgtcaccatctgctgggagcaatggaggagctgctgctgcgcattggctccaaggcagtaggctgcgttcttctttcaatgcaagggatgctgctgttgatgaccttggcatgctcctcgaatgggaatcacaataccttggggcactctgcctgccacccagcagccgcccccaaccacgcctttcagctggtctga
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| Protein seq | MGELADLVVVPSQPPLAGGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASPDALGDLEVLLGRRQALAVLLPDTLHRRLCHHLLGAMEELLLRIGSKAVGCVLLSMQGMLLLMTLACSSNGNHNTLGHSACHPAAAPNHAFQLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 22626330 | 22626394 | + | OsARC_07g0019790.01 | OsARC_07g0019790.01,OsARC_07g0019790.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.224901 | 0.600062 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0568300 | RBH | 2.552097 | 2.605654 | 5.294751 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g38090 | RBH | 1.714317 | 1.740798 | 1.316836 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0568300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0020020 | RBH | 0.527224 | 12.269720 | 6.379474 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019940 | RBH | 0.311196 | 4.597632 | 3.444797 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019900 | RBH | 1.613139 | 10.018869 | 7.315614 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019840 | RBH | 9.300345 | 16.610228 | 15.906534 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0373700 | RBH | 8.715991 | 20.091009 | 23.739906 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020310 | RBH | 0.320855 | 1.013338 | 2.011745 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0386100 | RBH | 12.453307 | 24.9361305 | 15.8007115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019740 | RBH | 0.981636 | 10.584256 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019690 | RBH | 2.685237 | 25.560699 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019860 | RBH | 0.914169 | 1.850220 | 2.268880 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019650 | RBH | 0.159637 | 9.908466 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019560 | RBH | 0.549757 | 3.204649 | 3.066586 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019650 | RBH | 3.274678 | 11.785472 | 10.552988 |
