Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0019380 | OGI:07062990 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:22223482-22231365 | ||||||||
| Gene Symbol | GD1, OsVAL1, VAL1, DLN186, OsDLN186 | ||||||||||
| DNA seq | ggctctctcgtcttattccgtccgtcccccacgattcccacacaccccaaaaccccccctcctctcctctctcgccgcgcggcgccgcgcgccccggggggactcgtcgcggccggccttagggtttcgaggcccatgtcgtcgccggcgcagccgcccccgacgcggccgccggtggccgccccgcccccatccctcgcggcggcggcccccatctcggtgcagccgcccccgctccagccgaaaccgccgccgcatccgcagcagccgcctcaggcggtcgtctcggttggggttgggccgccgccgccgacgccgcagcatcagcagcagcagcaggggccccccggtcacgcgccgccgcagcagcggcccaggatctgcttcaacgcgcactgcaaggaccccaaatccgacggcccgcgccgccgcggatggcgactccgcaacggcgacttcgccgagctctgcgaccgatgctagtacgtacgggtaacccccttaatcgcctccctcccccttccccctcccgcgcgcaatcggcggcgCccccccgcgtgctcgattcgtgcggggaggccggctcttctcctcctccacgcgcgggcggattcgcctatggcgcccaccggatctacgtggagtgatcgccacgtcgttgtaatttccgcggaatacgcgggggttttctgtaaaatttttttggggttcctcgtggtggtttgactcgcgtgcgactccgagagagctctcctgatgccatgcatggtgtgttctgtttcagtcactcgttcgagcatgggggcttttgcgagactttccatttggaggttgccgggtggaggaactgcgaatcctgcgggaaggtacggtgccccatgcatgctcgtttctctaatctttcgagccttgtggtggtgttcgtgatttgtgcttcctggctgatccctcccttgtatctctgttcttatcctgcagaggctgcactgtgggtgcattgtgtcggtccatgcatttgttcacctcgacgccggaggggtcgagtgcgtcatgtgtgctcgcaagtcgcatgctgcaatggtatgtttgtggtggctgttgctactgttgcgtgaatattggctgtaacaattggattgacggtataatatgggggatagatgtcttatgtagtattgtgctcccttcatgtgtattttgatccttggttggtgattgataaaattgcatgcattgcttggcagaaacttcataagtactggatggttcgttttatcacttgtgttccacttattgtcaccttctggcatctatttttttctcattgaaatggaaatctgagaaacatccatcattaactaaattgcagtctatcttggttggcagcattaattagggaaagtctgatgtattatgtagctgatgttctgttgatatatctttcttgccatttactttgaagctgttcagtgaactatgtaaagggtgtttctcatctacttctatgcatggatttttttttttttgaattcaacagcttttgcaaccgggtttgttttctttgggagtagttcgtactttttacttatcattataccttgtagttcgtactttttaattatcattataccttgtagttcgtactttttaattatcattataccttgatcctcatgtttgtcaggcaccaagtcagatatggtcatcttccatgcatatggctcaaaatgtagctgatagaaaagacaattttgtcaagagctggagacctcctgccgggcaattttcaagccagtggcggcagaataatatgtggagtatgtccaccatgcagtctgacttgcagcagcgcctagcttttgagtttgataggcctagtggcagtgaaaaattgcttccagggcgcacttttattcatgcccatgagaagaaatttgatgacatgcatgacagatcaacaacacctgctggcatgaaccagattatgagggagaggtatgccaatgggcatactcagcacaccaccctggatccgacgtacgcttacactctctatcacagagaaggaacaaatccaaatcttcatgaccatagtcaccatgcaggagaaaatgaccatttgactgcaaggaaaggagtaacttcagatccttgttcctctgtatctactaccttcaagcttgattcacaccatccgtccattttgaaagatgatccatcagccgtaccagctgggttgtcttctaatttttcatcagcaaatggcccaaaagaccatatcagaattggaccaactcagcagcagcagcaaatggcttcctcctcattgcagaaacaattctattcccatagtgtgattgataacgattttcaagcgcaattgcgcaatggaaggcctagaatggatgcaaaggcgagatctcagttgcttccacgctattggcctagaataacagatcaagagctacagcacctatctggagagtatccaaaaaattctatgtatcttcatcagcaatttcctctagataatatagatttactagtaaatactgtcatttttttcacgtgtttttttttgtttaaactcttgcctgttcttaagtgtttccttaaccctccaacagctcaaattctgttattacccctttgtttgagaaaatgttaagtgctagtgatgctggacggattggtcgtttggtgttgccaaagaaatgtgctgaggtgagttattcagttatcgttttaaactgtcttttcttttattagattgtattactgaactgtttattatgctaggcttgccatgcatgggatctgccctcattagtgtttactaataacccatgtatgatgtatggttatataatctgtccttttacttttactaggttttgcaacttatcccgagtcatgcacagatatttgacataatctcgtgatttggttatatatatgtgaataagcttgtgatttaaaactaatctgatgtatgggaacttctatagaaatgtgggttatttagaattaccagcaactattgccttcattttagttgttttaaccaaaagtgggttgaaatcagttgatgctacattataattggatgtgcagtcattttacatactttgctgatcacctccaattttgtttattttattgcataaatactcttctaacaaaaaaaaaagtttcgaataggcgtacttccctgccatctctcaggcagaagggcttcccttaaaagttcaggatgctactggtaaggaatgggtgttccagttccgcttttggcccaataataacagcaggatgtatgtattggagggtgtcacaccttgcattcaatcgatgcagttacaagcaggcgatacaggtatatatcttctacaaaagactcagtatataagtttgctaatgtgagttaatggtatgctgcaaacctatttctaacgcatagagatttggcatgcatgtagtaaatcattaatatttttctgcacattttatattagggcacgtcttatccatttagatgcgttatgttctaatgattttattgtatttgctgttttattccagttccagttgtgctacatttcttaaaaatgctatctgtgtgattcctatatcttctttttagtatacacatgattgtgcttatctttctccatatgagaaacatttttgtttcttttaaaattggcttatgatttttttgacatcctagttcatgttgccatattttttcagtaacctttagccgaatagatccagaagggaagctggtcatgggatttcgaaaggcaacaaatctttctgcagaacaggtaagaaagttttggactttgggttcttcaatatatttgttgtactgtacctctcattagttccagctgaaacaaacatgctatttgtatatttgtctctagaagtcttactaggcgaccatatctgacatgctcactattagatgttctacttctgctgcatactatattatttctcaaattttgagatctgcttgactctaggagtttttatctactgatgaaatgagataattatggcaacacatgttgggcttcaagaacacaaaaaaatgatgtgtttttaaaaccaaatttaggtgtatcatatgttaggtatcacacaatttagagtgttttgttacttactcctggagagagtgcttattttttagcgtgttatatcatgctggttctacactagcaaactatttgcaacgaatatgagatctgtcgaactggtaactagtttgttgaagtcttcctttggttcatttgacaggaccaacctacaaagcctgccaatggtgtactaccccctccagaagcaaataataaagttgttgtcccagattctagtcctaatgctgctgtacctcgaccaattaaagtcaacacagagagcaaaagttccagccctgtggaacaagccactgcctgtaaaattgacaaaggtgcattaccacAaaaggaagggccaggaacttcaagttcctccccactacctgtcaagagaaaggcaacttctgttggtccgaagatcaaacggttccacatggacagtgaggaatccatggaattgaagataacatgggaggaagctcaagaattacttcgtcctcctcctaaggccccttcaattgttgttgttgatggccatgagtttgaggaatatgaggtatgctgtgcattttattatttcttttagcattcagatcttggctagtgggcacaggcctgcaaacttgagccctattcagctgttcaatgttatgggacaattactatctgagacatagtttggagcatgcttaagcttatttgcattcgtgacttgctttactgtgttcttggtatagaagattaaacacatatcttctatattgacgtcctataattttcaggagccaccaatacttgggaggaggacatattttgtgacagaccaatcagggtaatgctcttagctttgctatctgcatttgttatatatgtggaaaaggacccagacagaccattccagttctttctttttagtaacatttatctcaacactttttctcataatgcttaacttatctagctaccttaattttttatgtgttttttttcaatgttttggaaacttttaattgttgaaaccattaatggtctatctgaatagaattatcctattggtgcatgatgagacgacaatataaattctcttgacttccatttgtaggactcccaacagtttactttttggaaagtacagtagcatcttttttacttgcttacaaatgatcatcattttttaccagtgagaatcatcaatgggctcaatgtgaggattgctctaagtggcgtaaactgccggtggacgcccttttgccctctaagtggacctgctctgacaataaatgggattctgaaaggtgacctgctattttagaaccattcagccttttgtatgctgtatttatgattagctacaatagaaaaacgtatttacaaatgttctaggtagggatgcaagtgggctgacccgtgaacccacatataggtcaaataagtgggtaacccgtaggttcccgtgtcatggcccagcttgccacacctagggctgcaagtgggttgaccagtgaacccactgggttacccactaatttggcctataatagggttcgcgggttggtccacttgcatcctaagttcaaggatagctcttagggttatgcttatggttcttttttgttaccgaatttcaattctattaaccctatttccacccatcagttctttataaatattgcaatcacgaagtttgagctgtctgtttcttaaatctacggtggaatttagcatgtttgaacacaagaatagcttttttttttctttctgttcacgtgtggttggtaggatggtgggatagtctcaatttactttacacacgtagctaataaccaccactacttatcactaggtcttcctgtgattctgcccaagagataaatatggaggagcttggcgaaatgattcctatcaaacctggtatgtatatgttctagtgatttatctatgctgatgtagaagctccatttctgctagtagttctttttaaatagcatgccaaatatgaattccaaaaggataataaattggagaggttcactacgaacaattggctgtatagaactatgtgctactgtgctacatgccagagcctacaaaagtacatcctgaggcatgtaaggctggttgatatctatcactactgatggctggatgtcacaatgaagcatcatagtattagtacatgttatagttggcaatgggccgaactacaaaaacgacttgccatgatccagcctgaggcatgtaaggctggttgatatctatcactactgatggctggattcacaatgaagcattggcaatgggccgaactacaaaaacgacttgccatgatccagcctgaggcatgtaaggctggttgatatctatcactactgatggctggattcacaatgaagcatcatagtattagtacatgatatagttggcaatgggccgaactacaaaaacgacttgccatgatccactgtgttgagaatgccatcttgaaccaacacatccccaatgttactttggggctacatatttctatctgtggtaccagtatgaaagtagtcaatgtttgcataatgccactatattttctttgctgtgtggtaggctataactgcactaaatgatctactataattactgttctagcatttacttaaaattcatgttgttgcatttcaggtgctgcaaaaaagaccaaagggaaggtagatactgacaatattgatgtttcagatgggctggacacactcgcaaatcttgcaattcttggtgaaggtgaatctctcccttcccagccaaccacaaggcatccccgccatcgccctggctgctcatgcatagtctgcatacaaccacccagcggaaagggaccaaagcacaaacagacgtgcacttgcaacgtctgtatgacagtgcgacgccgtttcaggacgcttatgatgcggcgcgagaagcgccagcagtcagagaaggactctggggtgcctcgcaaaagagagccaggtcaatccagcgagccagttccacaatctggctctggtgctcatccaaccagtactagctctcctcaccagagagcagataccaacggcgaaggtcctgaagacatgtccattgacaacaagaggacctcctctcctgtcaagaaccagattgacctgaacagtcagcctgagcgggaagacgagcagtcaccgaaatccgatgcgacgagactcctcagggacaacccaacctagggctgcctgcccaaaagggaagtcatactggcgatggtagataaccgatgaaaaagataatgtctataccaatggagaaatgcggcgggcggatttgtagtgtagctctgtagatgttacctttctataccaaagatctagtttatcctgtggcgggagagatccagttttaatgttatcataccatagaaccaggcgtcggtgttgtagtagaacccgttgctgtttgcctagggcccgttgctttaccctgtatgtagtaatgtagcgtgagagcggcgcccttcggcagcatgtacctctgggcaaatttatttcatgtaccggatcatccatccctgtgcaaggagaggatttactatgttgcttaccggggtggtttccctttggcattatagcatgcattcatatctatagtgtgatctgacgtgataatgtttaccatcaaagtttacccgtactcaaatcacggaattctgacgtgatatgtatagtgtcggtgt
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| CDS seq | atgtcgtcgccggcgcagccgcccccgacgcggccgccggtggccgccccgcccccatccctcgcggcggcggcccccatctcggtgcagccgcccccgctccagccgaaaccgccgccgcatccgcagcagccgcctcaggcggtcgtctcggttggggttgggccgccgccgccgacgccgcagcatcagcagcagcagcaggggccccccggtcacgcgccgccgcagcagcggcccaggatctgcttcaacgcgcactgcaaggaccccaaatccgacggcccgcgccgccgcggatggcgactccgcaacggcgacttcgccgagctctgcgaccgatgctatcactcgttcgagcatgggggcttttgcgagactttccatttggaggttgccgggtggaggaactgcgaatcctgcgggaagaggctgcactgtgggtgcattgtgtcggtccatgcatttgttcacctcgacgccggaggggtcgagtgcgtcatgtgtgctcgcaagtcgcatgctgcaatggcaccaagtcagatatggtcatcttccatgcatatggctcaaaatgtagctgatagaaaagacaattttgtcaagagctggagacctcctgccgggcaattttcaagccagtggcggcagaataatatgtggagtatgtccaccatgcagtctgacttgcagcagcgcctagcttttgagtttgataggcctagtggcagtgaaaaattgcttccagggcgcacttttattcatgcccatgagaagaaatttgatgacatgcatgacagatcaacaacacctgctggcatgaaccagattatgagggagaggtatgccaatgggcatactcagcacaccaccctggatccgacgtacgcttacactctctatcacagagaaggaacaaatccaaatcttcatgaccatagtcaccatgcaggagaaaatgaccatttgactgcaaggaaaggagtaacttcagatccttgttcctctgtatctactaccttcaagcttgattcacaccatccgtccattttgaaagatgatccatcagccgtaccagctgggttgtcttctaatttttcatcagcaaatggcccaaaagaccatatcagaattggaccaactcagcagcagcagcaaatggcttcctcctcattgcagaaacaattctattcccatagtgtgattgataacgattttcaagcgcaattgcgcaatggaaggcctagaatggatgcaaaggcgagatctcagttgcttccacgctattggcctagaataacagatcaagagctacagcacctatctggagactcaaattctgttattacccctttgtttgagaaaatgttaagtgctagtgatgctggacggattggtcgtttggtgttgccaaagaaatgtgctgaggcgtacttccctgccatctctcaggcagaagggcttcccttaaaagttcaggatgctactggtaaggaatgggtgttccagttccgcttttggcccaataataacagcaggatgtatgtattggagggtgtcacaccttgcattcaatcgatgcagttacaagcaggcgatacagtaacctttagccgaatagatccagaagggaagctggtcatgggatttcgaaaggcaacaaatctttctgcagaacaggaccaacctacaaagcctgccaatggtgtactaccccctccagaagcaaataataaagttgttgtcccagattctagtcctaatgctgctgtacctcgaccaattaaagtcaacacagagagcaaaagttccagccctgtggaacaagccactgcctgtaaaattgacaaaggtgcattaccacAaaaggaagggccaggaacttcaagttcctccccactacctgtcaagagaaaggcaacttctgttggtccgaagatcaaacggttccacatggacagtgaggaatccatggaattgaagataacatgggaggaagctcaagaattacttcgtcctcctcctaaggccccttcaattgttgttgttgatggccatgagtttgaggaatatgaggagccaccaatacttgggaggaggacatattttgtgacagaccaatcaggtgagaatcatcaatgggctcaatgtgaggattgctctaagtggcgtaaactgccggtggacgcccttttgccctctaagtggacctgctctgacaataaatgggattctgaaaggtcttcctgtgattctgcccaagagataaatatggaggagcttggcgaaatgattcctatcaaacctggtgctgcaaaaaagaccaaagggaaggtagatactgacaatattgatgtttcagatgggctggacacactcgcaaatcttgcaattcttggtgaaggtgaatctctcccttcccagccaaccacaaggcatccccgccatcgccctggctgctcatgcatagtctgcatacaaccacccagcggaaagggaccaaagcacaaacagacgtgcacttgcaacgtctgtatgacagtgcgacgccgtttcaggacgcttatgatgcggcgcgagaagcgccagcagtcagagaaggactctggggtgcctcgcaaaagagagccaggtcaatccagcgagccagttccacaatctggctctggtgctcatccaaccagtactagctctcctcaccagagagcagataccaacggcgaaggtcctgaagacatgtccattgacaacaagaggacctcctctcctgtcaagaaccagattgacctgaacagtcagcctgagcgggaagacgagcagtcaccgaaatccgatgcgacgagactcctcagggacaacccaacctag
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| Protein seq | MSSPAQPPPTRPPVAAPPPSLAAAAPISVQPPPLQPKPPPHPQQPPQAVVSVGVGPPPPTPQHQQQQQGPPGHAPPQQRPRICFNAHCKDPKSDGPRRRGWRLRNGDFAELCDRCYHSFEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADRKDNFVKSWRPPAGQFSSQWRQNNMWSMSTMQSDLQQRLAFEFDRPSGSEKLLPGRTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPTYAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSHSVIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPGAAKKTKGKVDTDNIDVSDGLDTLANLAILGEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLRDNPT |
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| Function | B3 domain-containing protein Os07g0563300 [UniProtKB/Swiss-Prot:Q0D5G4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0019380 | OsARC_07g0019380.02 | Chr07 | 22223617 | 22231231 | + | NAM | ||
| CDS seq | atgtcgtcgccggcgcagccgcccccgacgcggccgccggtggccgccccgcccccatccctcgcggcggcggcccccatctcggtgcagccgcccccgctccagccgaaaccgccgccgcatccgcagcagccgcctcaggcggtcgtctcggttggggttgggccgccgccgccgacgccgcagcatcagcagcagcagcaggggccccccggtcacgcgccgccgcagcagcggcccaggatctgcttcaacgcgcactgcaaggaccccaaatccgacggcccgcgccgccgcggatggcgactccgcaacggcgacttcgccgagctctgcgaccgatgctatcactcgttcgagcatgggggcttttgcgagactttccatttggaggttgccgggtggaggaactgcgaatcctgcgggaagaggctgcactgtgggtgcattgtgtcggtccatgcatttgttcacctcgacgccggaggggtcgagtgcgtcatgtgtgctcgcaagtcgcatgctgcaatggcaccaagtcagatatggtcatcttccatgcatatggctcaaaatgtagctgatagaaaagacaattttgtcaagagctggagacctcctgccgggcaattttcaagccagtggcggcagaataatatgtggagtatgtccaccatgcagtctgacttgcagcagcgcctagcttttgagtttgataggcctagtggcagtgaaaaattgcttccagggcgcacttttattcatgcccatgagaagaaatttgatgacatgcatgacagatcaacaacacctgctggcatgaaccagattatgagggagaggtatgccaatgggcatactcagcacaccaccctggatccgacgtacgcttacactctctatcacagagaaggaacaaatccaaatcttcatgaccatagtcaccatgcaggagaaaatgaccatttgactgcaaggaaaggagtaacttcagatccttgttcctctgtatctactaccttcaagcttgattcacaccatccgtccattttgaaagatgatccatcagccgtaccagctgggttgtcttctaatttttcatcagcaaatggcccaaaagaccatatcagaattggaccaactcagcagcagcagcaaatggcttcctcctcattgcagaaacaattctattcccatagtgtgattgataacgattttcaagcgcaattgcgcaatggaaggcctagaatggatgcaaaggcgagatctcagttgcttccacgctattggcctagaataacagatcaagagctacagcacctatctggagactcaaattctgttattacccctttgtttgagaaaatgttaagtgctagtgatgctggacggattggtcgtttggtgttgccaaagaaatgtgctgaggcgtacttccctgccatctctcaggcagaagggcttcccttaaaagttcaggatgctactggtaaggaatgggtgttccagttccgcttttggcccaataataacagcaggatgtatgtattggagggtgtcacaccttgcattcaatcgatgcagttacaagcaggcgatacagtaacctttagccgaatagatccagaagggaagctggtcatgggatttcgaaaggcaacaaatctttctgcagaacaggaccaacctacaaagcctgccaatggtgtactaccccctccagaagcaaataataaagttgttgtcccagattctagtcctaatgctgctgtacctcgaccaattaaagtcaacacagagagcaaaagttccagccctgtggaacaagccactgcctgtaaaattgacaaaggtgcattaccacAaaaggaagggccaggaacttcaagttcctccccactacctgtcaagagaaaggcaacttctgttggtccgaagatcaaacggttccacatggacagtgaggaatccatggaattgaagataacatgggaggaagctcaagaattacttcgtcctcctcctaaggccccttcaattgttgttgttgatggccatgagtttgaggaatatgaggagccaccaatacttgggaggaggacatattttgtgacagaccaatcaggtgagaatcatcaatgggctcaatgtgaggattgctctaagtggcgtaaactgccggtggacgcccttttgccctctaagtggacctgctctgacaataaatgggattctgaaaggtcttcctgtgattctgcccaagagataaatatggaggagcttggcgaaatgattcctatcaaacctgatgggctggacacactcgcaaatcttgcaattcttggtgaaggtgaatctctcccttcccagccaaccacaaggcatccccgccatcgccctggctgctcatgcatagtctgcatacaaccacccagcggaaagggaccaaagcacaaacagacgtgcacttgcaacgtctgtatgacagtgcgacgccgtttcaggacgcttatgatgcggcgcgagaagcgccagcagtcagagaaggactctggggtgcctcgcaaaagagagccaggtcaatccagcgagccagttccacaatctggctctggtgctcatccaaccagtactagctctcctcaccagagagcagataccaacggcgaaggtcctgaagacatgtccattgacaacaagaggacctcctctcctgtcaagaaccagattgacctgaacagtcagcctgagcgggaagacgagcagtcaccgaaatccgatgcgacgagactcctcagggacaacccaacctag
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| Protein seq | MSSPAQPPPTRPPVAAPPPSLAAAAPISVQPPPLQPKPPPHPQQPPQAVVSVGVGPPPPTPQHQQQQQGPPGHAPPQQRPRICFNAHCKDPKSDGPRRRGWRLRNGDFAELCDRCYHSFEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADRKDNFVKSWRPPAGQFSSQWRQNNMWSMSTMQSDLQQRLAFEFDRPSGSEKLLPGRTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPTYAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSHSVIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPDGLDTLANLAILGEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLRDNPT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0019380 | OsARC_07g0019380.01 | Chr07 | 22223482 | 22231365 | + | NAM | ||
| CDS seq | atgtcgtcgccggcgcagccgcccccgacgcggccgccggtggccgccccgcccccatccctcgcggcggcggcccccatctcggtgcagccgcccccgctccagccgaaaccgccgccgcatccgcagcagccgcctcaggcggtcgtctcggttggggttgggccgccgccgccgacgccgcagcatcagcagcagcagcaggggccccccggtcacgcgccgccgcagcagcggcccaggatctgcttcaacgcgcactgcaaggaccccaaatccgacggcccgcgccgccgcggatggcgactccgcaacggcgacttcgccgagctctgcgaccgatgctatcactcgttcgagcatgggggcttttgcgagactttccatttggaggttgccgggtggaggaactgcgaatcctgcgggaagaggctgcactgtgggtgcattgtgtcggtccatgcatttgttcacctcgacgccggaggggtcgagtgcgtcatgtgtgctcgcaagtcgcatgctgcaatggcaccaagtcagatatggtcatcttccatgcatatggctcaaaatgtagctgatagaaaagacaattttgtcaagagctggagacctcctgccgggcaattttcaagccagtggcggcagaataatatgtggagtatgtccaccatgcagtctgacttgcagcagcgcctagcttttgagtttgataggcctagtggcagtgaaaaattgcttccagggcgcacttttattcatgcccatgagaagaaatttgatgacatgcatgacagatcaacaacacctgctggcatgaaccagattatgagggagaggtatgccaatgggcatactcagcacaccaccctggatccgacgtacgcttacactctctatcacagagaaggaacaaatccaaatcttcatgaccatagtcaccatgcaggagaaaatgaccatttgactgcaaggaaaggagtaacttcagatccttgttcctctgtatctactaccttcaagcttgattcacaccatccgtccattttgaaagatgatccatcagccgtaccagctgggttgtcttctaatttttcatcagcaaatggcccaaaagaccatatcagaattggaccaactcagcagcagcagcaaatggcttcctcctcattgcagaaacaattctattcccatagtgtgattgataacgattttcaagcgcaattgcgcaatggaaggcctagaatggatgcaaaggcgagatctcagttgcttccacgctattggcctagaataacagatcaagagctacagcacctatctggagactcaaattctgttattacccctttgtttgagaaaatgttaagtgctagtgatgctggacggattggtcgtttggtgttgccaaagaaatgtgctgaggcgtacttccctgccatctctcaggcagaagggcttcccttaaaagttcaggatgctactggtaaggaatgggtgttccagttccgcttttggcccaataataacagcaggatgtatgtattggagggtgtcacaccttgcattcaatcgatgcagttacaagcaggcgatacagtaacctttagccgaatagatccagaagggaagctggtcatgggatttcgaaaggcaacaaatctttctgcagaacaggaccaacctacaaagcctgccaatggtgtactaccccctccagaagcaaataataaagttgttgtcccagattctagtcctaatgctgctgtacctcgaccaattaaagtcaacacagagagcaaaagttccagccctgtggaacaagccactgcctgtaaaattgacaaaggtgcattaccacAaaaggaagggccaggaacttcaagttcctccccactacctgtcaagagaaaggcaacttctgttggtccgaagatcaaacggttccacatggacagtgaggaatccatggaattgaagataacatgggaggaagctcaagaattacttcgtcctcctcctaaggccccttcaattgttgttgttgatggccatgagtttgaggaatatgaggagccaccaatacttgggaggaggacatattttgtgacagaccaatcaggtgagaatcatcaatgggctcaatgtgaggattgctctaagtggcgtaaactgccggtggacgcccttttgccctctaagtggacctgctctgacaataaatgggattctgaaaggtcttcctgtgattctgcccaagagataaatatggaggagcttggcgaaatgattcctatcaaacctggtgctgcaaaaaagaccaaagggaaggtagatactgacaatattgatgtttcagatgggctggacacactcgcaaatcttgcaattcttggtgaaggtgaatctctcccttcccagccaaccacaaggcatccccgccatcgccctggctgctcatgcatagtctgcatacaaccacccagcggaaagggaccaaagcacaaacagacgtgcacttgcaacgtctgtatgacagtgcgacgccgtttcaggacgcttatgatgcggcgcgagaagcgccagcagtcagagaaggactctggggtgcctcgcaaaagagagccaggtcaatccagcgagccagttccacaatctggctctggtgctcatccaaccagtactagctctcctcaccagagagcagataccaacggcgaaggtcctgaagacatgtccattgacaacaagaggacctcctctcctgtcaagaaccagattgacctgaacagtcagcctgagcgggaagacgagcagtcaccgaaatccgatgcgacgagactcctcagggacaacccaacctag
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| Protein seq | MSSPAQPPPTRPPVAAPPPSLAAAAPISVQPPPLQPKPPPHPQQPPQAVVSVGVGPPPPTPQHQQQQQGPPGHAPPQQRPRICFNAHCKDPKSDGPRRRGWRLRNGDFAELCDRCYHSFEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADRKDNFVKSWRPPAGQFSSQWRQNNMWSMSTMQSDLQQRLAFEFDRPSGSEKLLPGRTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPTYAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSHSVIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPPKAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPGAAKKTKGKVDTDNIDVSDGLDTLANLAILGEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLRDNPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 22229543 | 22230357 | + | OsARC_07g0019380.01 | OsARC_07g0019380.02,OsARC_07g0019380.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.310293 | 0.398717 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0563300 | RBH | 3.328517 | 3.368147 | 6.824814 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g37610 | RBH | 2.187415 | 2.210904 | 1.704479 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0563300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0019620 | RBH | 1.355859 | 15.315741 | 10.637275 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0019550 | RBH | 0.902702 | 9.845746 | 4.048840 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019520 | RBH | 1.716934 | 9.573013 | 14.880724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0019450 | RBH | 12.114857 | 26.242500 | 26.268335 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0367500 | RBH | 13.3615225 | 36.077431 | 107.7136575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0019920 | RBH | 0.481124 | 1.507086 | 1.768655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0379600 | RBH | 15.646178 | 26.219201 | 35.920168 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019240 | RBH | 0.340536 | 0.621309 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019360 | RBH | 0.951422 | 15.069448 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019260 | RBH | 10.372393 | 36.787495 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019470 | RBH | 1.401341 | 1.919784 | 1.320989 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0019280 | RBH | 0.388373 | 14.451976 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019180 | RBH | 1.373886 | 5.477979 | 4.678615 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019260 | RBH | 1.963148 | 33.057491 | 9.669393 |
