Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0017240 | OGI:07057450 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:20327523-20329800 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggtatcaaaattcaaagaataaatcggattatgggcttgaggatttcttccaggaggtatcataacaattttatccacaccaagattttgatgcactattgtctatgattttgtagccatgagtgctaatttcacaaaatgatgatgaaatcttctgattttgtgttctgttgaattaggttaaggagattgagacgttgttggacaagatgtccaatataaaccacaaacttcaggtatacttaattcctttccaacattttgtcaaaagagttaattgtccatgacaatatttttcttacgtttcccccattaccatactatggagttggagaattgatacattcttatcaactataggaagccaatgaggaatcaaaatccgtcactaaggcttccgaaatgaaaggttgcaaacgtcaattaatctgttgattgatctgcatatatagctaagtttcagagtagaatgatcatactaatgcattcatctgaaataaaaacacattccagcaatcaacaagcgcatggagaaagatatcaatgaagttgggaaaattacacgcaccataaaagtgaagttggaggagatggataggaatgtaaggattttagcatgtctactaatctgcactactatgtgaattagcccagttctcacgatctcacttgttttctgattgcagaatcttgaaaacagaaaaaagcaagggtgtgaaaagggcacaggagtagaccgatcaaggatgtcaatgaccatgtaaggtgttcatacatttcttcagtaaatttaataatttggaagatataatcagatatgtttgatatcgacaagataaattaaattcagcatgattgacattgatcattgacccaccaccaaaaaaagaattgtgacatattttgagtaaaattggtttgttaggtctattatcagatcactgtagtcccaaagtatttgtaaagtttaagaaacaattccatattttgcttgttcaacataacaaaagaggtgaattttgattggttcttggtgattgcagtgcgctgaaaaataaactcaaagaaagaatgaaaaatttccaggtaaactttctagcttattatccatcttctatgagaaaacaaattgaagagcttgcagtacagtaatccacatttcatacagaatctaagacaaattattcaagatgagtaccgacaaggcgttgcgaggatggttttcacaggtaaggagttcttttttcaagtcgttttacgttctttctgataaatatttccttcgttctagaatgtaaggtgttttggtttgtcttggagtagtttgacttagaacaaatccaaaacaacttctattctgaaacggagagagtataatttacttcaagctattctatcacatgcttcttgataaacctgaatcttgaacagtcactggagagcagccttctgatcaggtgaggacagtagtgctactacgcttggtgttgagagatgctttctcctctgatctcattgtggttaaaaaaaaaacatgactaggtgattgaccacctgattgagaccggcagcagtgagcagatatttgagaaagcgattcagggaattgggagagggcaggttgaatatcgtgttcagcttcaccagtacattatatgttccttccatgtcattaaggctggcaattcttacaatagtgctcaaatgtttcataattgcacatacttacagataatagccacggttaaagaaatccatgaaaggcatgatgtagtcatggaaattgaaaaaaaacttcttgaattgcaacaggtagctttggcaagattgcacgtttgttcttcagaattgagctcatataatcaatggactaactatatcccatatcactaattatctctttattatgacttcttccacctgctgtcagatttttgcggatatggcaacactcgtcgacgcacaaggagagacattgaacgacatagagaaccaggtttgcaatctccctccattttgttgccgaacttactgaaaactcaaaagacaattaacgaatgtggctggaaatatttcgccttgttagcttgataatgagtttaaaactctcaggttcaaaatgctgtggaccatatacaacgtggtacaggagagctgcgcacagctaagagactgcagaagaagtcaaggaagtgcatgttcatcgcaatcatcatactcctggtcattgcagctattgtcgttctttcaatcttaaagccctgggctaagtag
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| CDS seq | atggggtatcaaaattcaaagaataaatcggattatgggcttgaggatttcttccaggaggttaaggagattgagacgttgttggacaagatgtccaatataaaccacaaacttcaggaagccaatgaggaatcaaaatccgtcactaaggcttccgaaatgaaagcaatcaacaagcgcatggagaaagatatcaatgaagttgggaaaattacacgcaccataaaagtgaagttggaggagatggataggaataatcttgaaaacagaaaaaagcaagggtgtgaaaagggcacaggagtagaccgatcaaggatgtcaatgaccattgcgctgaaaaataaactcaaagaaagaatgaaaaatttccaggtgattgaccacctgattgagaccggcagcagtgagcagatatttgagaaagcgattcagggaattgggagagggcaggttgaatatcgtgttcagcttcaccagtacattatatgttccttccatgtcattaaggctggcaattcttacaatagtgctcaaatgtttcataattgcacatacttacagataatagccacggttaaagaaatccatgaaaggcatgatgtagtcatggaaattgaaaaaaaacttcttgaattgcaacagatttttgcggatatggcaacactcgtcgacgcacaaggagagacattgaacgacatagagaaccaggttcaaaatgctgtggaccatatacaacgtggtacaggagagctgcgcacagctaagagactgcagaagaagtcaaggaagtgcatgttcatcgcaatcatcatactcctggtcattgcagctattgtcgttctttcaatcttaaagccctgggctaagtag
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| Protein seq | MGYQNSKNKSDYGLEDFFQEVKEIETLLDKMSNINHKLQEANEESKSVTKASEMKAINKRMEKDINEVGKITRTIKVKLEEMDRNNLENRKKQGCEKGTGVDRSRMSMTIALKNKLKERMKNFQVIDHLIETGSSEQIFEKAIQGIGRGQVEYRVQLHQYIICSFHVIKAGNSYNSAQMFHNCTYLQIIATVKEIHERHDVVMEIEKKLLELQQIFADMATLVDAQGETLNDIENQVQNAVDHIQRGTGELRTAKRLQKKSRKCMFIAIIILLVIAAIVVLSILKPWAK |
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| Function | Putative syntaxin-131 [UniProtKB/Swiss-Prot:Q9SRV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0017240 | OsARC_07g0017240.01 | Chr07 | 20327523 | 20329800 | + | NAM | ||
| CDS seq | atggggtatcaaaattcaaagaataaatcggattatgggcttgaggatttcttccaggaggttaaggagattgagacgttgttggacaagatgtccaatataaaccacaaacttcaggaagccaatgaggaatcaaaatccgtcactaaggcttccgaaatgaaagcaatcaacaagcgcatggagaaagatatcaatgaagttgggaaaattacacgcaccataaaagtgaagttggaggagatggataggaataatcttgaaaacagaaaaaagcaagggtgtgaaaagggcacaggagtagaccgatcaaggatgtcaatgaccattgcgctgaaaaataaactcaaagaaagaatgaaaaatttccaggtgattgaccacctgattgagaccggcagcagtgagcagatatttgagaaagcgattcagggaattgggagagggcaggttgaatatcgtgttcagcttcaccagtacattatatgttccttccatgtcattaaggctggcaattcttacaatagtgctcaaatgtttcataattgcacatacttacagataatagccacggttaaagaaatccatgaaaggcatgatgtagtcatggaaattgaaaaaaaacttcttgaattgcaacagatttttgcggatatggcaacactcgtcgacgcacaaggagagacattgaacgacatagagaaccaggttcaaaatgctgtggaccatatacaacgtggtacaggagagctgcgcacagctaagagactgcagaagaagtcaaggaagtgcatgttcatcgcaatcatcatactcctggtcattgcagctattgtcgttctttcaatcttaaagccctgggctaagtag
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| Protein seq | MGYQNSKNKSDYGLEDFFQEVKEIETLLDKMSNINHKLQEANEESKSVTKASEMKAINKRMEKDINEVGKITRTIKVKLEEMDRNNLENRKKQGCEKGTGVDRSRMSMTIALKNKLKERMKNFQVIDHLIETGSSEQIFEKAIQGIGRGQVEYRVQLHQYIICSFHVIKAGNSYNSAQMFHNCTYLQIIATVKEIHERHDVVMEIEKKLLELQQIFADMATLVDAQGETLNDIENQVQNAVDHIQRGTGELRTAKRLQKKSRKCMFIAIIILLVIAAIVVLSILKPWAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0528900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g34510 | RBH | 0.395781 | 0.428133 | 0.383237 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0528900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017480 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0017850 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0351100 | RBH | 0.043498 | 0.016517 | 0.0033025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017090 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017490 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017130 | RBH | 0.000000 | 0.0 | 0.0 |
