Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0008740 | OGI:07024410 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:8182668-8187640 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCCAAACCCTAGAAGCGAAGCAGCGAGACGCCGCCATTAGGGTTAGGGTTTGCTCCTCCTCCTCTTCCCTCTACACGAGGCGGCGCTGGCGTCCATGGCGCACGGCGGCGGCGGGAGGGCGAAGGTGACGCCGAACCTGGCGATGGACGAGGAGGGGACGCGGGTGCTCAACATCACCGTGCTCCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGGCCACGTCACGCTCTACGACTTCGACACCAACCTCAACCAGTGGGTAAGATGGCTTTTTGTTTTTTTGTTATCTCTTCGATTCGTGGCTCGGTTGCTTCGCTTGGTTATGTGCTTCATGTCGATTTGGCCTGATTTGTTGTCGTTGCAGAGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGGTTCGTTCCAGGATTTGTTTCCTTCTTGTGTCTGAATTTGCTGATTTTAGTTTTCGGTTACTGTTTACCTGTTAGATGAAAGGTGTTACACGCCTCTAGTGATTGAGTTTGTTGAACGTATTGGGTGCCATTTGATTAGAATGATGAATGCAATATCATGCAGAACCTAGTGCTGATTAGTAGGTTTGCTTAGCAGAGGATCTTGGAGGTAGCTTTCATGAATTTTCGTTCAATATAGCATTATAGCTACAACTATTTCTTTAACACAGTGAATGACAGCGTTGAAGTGGCCCCTGTTCATTTTGTCAAGATCTTTATTTATTACAAAACAAAAGGGTTGTAAAGATATTCGGTGGTTGGTGAATAAAGTCCTAATTGTAAACATTGCAATCATTTGGTCGATTTTTCTTCTCTTGGTGCATTACATGCCCAAGTATGTTTTGTGTAAGAGTACACAATTATATTAATACTAATTTTGATATTAGAAGATTGCCAGATGAGATAGAAAACTTTGGCAGGGGATGGTGCTTTTTTGCAACTGTATTCTGCCAACATTACAGCATTTACACTTCTTGGCAATGCTTTGTCAGCACATTTGGTTTTGAATTCATTTCAGTGCTTAGGGGTTCAAGTGTTCCCAATTTGGAGAATGGATGATGAAACAGTCTGAAAATACCCAAAAAAAAAGGAACAGATAGAGTGCACATGTAACTGTGGAACATGGGAATTTTCAAATGAAATGCATCCCTGGTATCTAGAGCAACAAAGGAAAGAAACACCGCTTAGTCCATATTGATAGTGAATGACTGAATTCTCATTTTTATACAGTACACCATGGATATACCACATCCTTCAAATGATTGGATATACTTCAAATGGTGCAATGTGCCCTTTTTGCAAAGAGAATGTAGGAACCAACATTTTACTTAACCATATGTCTTGATATCTTGTCTCTTAATCATCAAATAATGCAAATGTATTAAAGTACCAATGAATCACATTTACTAGTTGTGTTGAATACCATTACATTTTTGCAATGCAGGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGGTACGCTGCATGAAAATTTTCTTGGTTTTCTTAGAGTTGAAGTTTCTATAATTGGCTATGTTACAACCTTTGTAAAACCTGTGCGTGAAATTGTCAATCTCACTTGTCACACATGATTGTCATTATCAATGTGCATTTGGGAACTTGTATCGGCTTATTTGTGAATTATTATTCATTGAAAAATAGTTAAACTTCAATGCTAGCAGCTCTCTGATGAGCTTCATTACAAAACAGTTGATATTTTTGTAGAAACTTCATATTACAAACCACATAAACTCTAGGGTCAAGCAGCGTTTTGGGAGCTTTTTTGTTTGTATTACAAGACACATTCTTCTTCTATGTTGATTTCTTAGTATTTGGTTTCCTTCATCTTATCAACAGATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGGTAAATTCGTATTTCCTACAAATAATGCTCCTTTAGTCCTTTTAGACTTTAGTGTCTTTGTGGACCGTGCTCCTAGTTTCTTGTTGTAGATTGTCTGGTTCATGTATCTTGCTGCTTGTATATGTAGAATGACCTGAAATATCAACTATTTGTTTTGAGAAAATGTGTATATCGAGTTACATCAACATAAATTATCCTTGTAGACATCACTTTCTAATGCCAACTCCTGAAAAGTTCAGCCCAAAGGGGTAATATAATCAAGCAACATGATTGTATGAGATGAGCAGTGTCTACGGGTCACTGAAAAAAGGACATGTGAGTCATAGTCTCACAGGAATGATAATATGCAAGGGATTAAATATTTTGGTCCACAGTAGTACTCATATAGCTGGTTATACAAATAGTAAGAAAAATATTTCATCTCTCCATATGGTATATCGTGTGATTTTCTGTTCTGACTTGTATAATTTGTAGTTTGCATGCCAAATATATCAGGGCCGGCTTGCTTTTGTTGTTCTACATTGTGGAATCTGTCATTACAGTAACCGGCTTAATTAACTGTTATACCTGAACGATAGAAAAAGAATTATTTTTCTAAACTGCCACAATGTTAAACAGAACCAATCTTCACTTTGTCAGTATGTCACACTTCCAGTTTATCTTGCTTTTATTATATAGTTAAAATTGTATATCAATTATATGACATTTTGAAAGTTAAAATTATCGTGGATGGGAGGTACAATAAAAGAATATCTCTACATCATTGATAAGCTAACTTCTTACTTTGCTCACTTTAGGTCAGTTTAGTTAGAATTTAGAGCTTGCATAAGTTTAAGGCTAAATGATCTAGTAGCAATGTGCTTGTTTCATAAGTCGAGGCTTCACACTTTCTTATATTATTTTTTCACTTCCTGATCGTGAAGGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATTAAAAGGTACCTAAATGTGTGTTTTGCGCTTTTTGCGCTACATTTCTTGATTTGATTGTAGAAGTTGTGCTAATCAACATGATTATATGAAATATTACTTTACTTTGTTATGGAGCTTTTAAGAATATTTGTTGGTTTATCAAACAAGATTTAGAATGCTTCTATTTAGATAGTTGAAAATTTTGTAGTACTTGAGGTTTCACATAGATCAGGTGGTTGAATCTTTTAACCAGAAGATATGTACAGTAGAAGTTACTGAAGGCATGTGTGTTGAACGGATTCCATCCTTTTTCTTGCAACCTTTTGCATGCCAGACATTTCTGTACTCAGATTAGCATGCGATCAATTATTCAATTTAAAATGAGATTAACATGACTCGTGGCTACTGCTTTGTGTTCATTTAATATTGTATCTTACTGCTGTATTGTAAACCATTCCCTTAATTTGTTGCTTTTGAATGTATATTTGCCATAAACTATGTTATTGTAATAGTGTTATACTGTCATCGATCTTATTTCAGTGAATTTGAAGAGCTGGAAGCAGCACCTACTTTGGTTGAAGGTCCACTAGAGCCTCAAACATCGAATATCATACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTGTATGGAAAGTTTGAAATGAGGCTTTTTCTCTGCAGCTTCACTTTGTATCATATATTCATATGATCTGCTCATCTCCGTTCTAATCTAGCTTGTTTGCAATGGAAGCGTTCTATAATTTCTTCAAGATAGAATTTTGTATTTTTAGTCTAACAAATTTGGGTCTCTTGGAACAGGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTAAATCAATCTTTTGGATCTACTCCTTTATCTTCACATGCACCAACAAGTATCAGTATATCTCAGCCTCCAGCTGTGCACCATTTGCTCCCTTCTCAAACTTCATCAGTAATATCCCCTGATGTTCATGGTGGAACTGGTGCTGTGGTCAACAGGTCAGCAAGCCTTCTAAATCCATCACTTTTTTCACCATTGACATCTTCTCAGACAACAATGGCCCGCACCAATCCTGTGGCACCTACTGCTCCACCTCAACATCCTCGCATCACTCAGCAACCACACAGTGCTCCCTTGCTTCAACCCTTTCCGTTACCTACAGCATCGCCTTCTCCACCATATGGGACTCCGTTACTTCAACCATTTCCGCCACCAAATCCATCCCCATCTCTTGCATCAGCACCGGTGTACAGCCCAGTACTGTCCAGAGAAAAAGTCAGGGATGCATTACTTAGGCTTGTTGAGGTATGCTGCAATAGCAATTTATGCACATTTCATGATTTATCTTTGTTGGCTCTCAGAGTTAAATTTTGTGATGAATTGAGTTAAGGCTTCAATTGAGGCATCCTGCAGGGCCTCATGCTTTGCTTAAATCATAGACATTTCCTGTTTCATTGTCTTGTGCATAATTCCCGTTGTACTAAGATGTCTCTCTAAGTTAGAGTTACAAGCCAGTGACACTTTATACCTTTATTTGCTAGCTATATTCCTGCATCTTTGGGTAGACAATTATTAACTGTTATGAGTGTTCTTTATGCCAGAATGATGATTTCATCGATTTAGTCTACCGGGAGATTGTGAAAGGATAGAATTAACATTTCAAGACAGCCTTCCTTCCAACAGGCTTGGTTTATGTTTGACTAGGGACTTCTATCATCTTTCGTCAGCTATTCAAGTTGCAGGACATGCTACTGTATATTTGTTGGTGTAAGTCCATAGGTGCACCATCCTCCATTGGCGGAGTTTGTATTTAAGTACCATTTTCATATCTGTAAAGACGAACTGAATCTATCTGCACGTTGGAATATTATGTGTTGTATATCCTTGGTGCAGAAAAGTTTTGCTCCATACATATCTGAAATCTTTGGTTTTGGTCGCATGCG
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| CDS seq | ATGGCGCACGGCGGCGGCGGGAGGGCGAAGGTGACGCCGAACCTGGCGATGGACGAGGAGGGGACGCGGGTGCTCAACATCACCGTGCTCCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGGCCACGTCACGCTCTACGACTTCGACACCAACCTCAACCAGTGGAGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATTAAAAGTGAATTTGAAGAGCTGGAAGCAGCACCTACTTTGGTTGAAGGTCCACTAGAGCCTCAAACATCGAATATCATACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTAAATCAATCTTTTGGATCTACTCCTTTATCTTCACATGCACCAACAAGTATCAGTATATCTCAGCCTCCAGCTGTGCACCATTTGCTCCCTTCTCAAACTTCATCAGTAATATCCCCTGATGTTCATGGTGGAACTGGTGCTGTGGTCAACAGGTCAGCAAGCCTTCTAAATCCATCACTTTTTTCACCATTGACATCTTCTCAGACAACAATGGCCCGCACCAATCCTGTGGCACCTACTGCTCCACCTCAACATCCTCGCATCACTCAGCAACCACACAGTGCTCCCTTGCTTCAACCCTTTCCGTTACCTACAGCATCGCCTTCTCCACCATATGGGACTCCGTTACTTCAACCATTTCCGCCACCAAATCCATCCCCATCTCTTGCATCAGCACCGGTGTACAGCCCAGTACTGTCCAGAGAAAAAGTCAGGGATGCATTACTTAGGCTTGTTGAGAATGATGATTTCATCGATTTAGTCTACCGGGAGATTGTGAAAGGATAG
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| Protein seq | MAHGGGGRAKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWSRKDVEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTLVEGPLEPQTSNIIPATTHVQEDPLSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVHHLLPSQTSSVISPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPSPSLASAPVYSPVLSREKVRDALLRLVENDDFIDLVYREIVKG |
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| Function | mRNA-decapping enzyme-like protein [UniProtKB/Swiss-Prot:Q9SJF3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0008740 | OsARC_07g0008740.01 | Chr07 | 8182668 | 8187640 | + | NAM | ||
| CDS seq | ATGGCGCACGGCGGCGGCGGGAGGGCGAAGGTGACGCCGAACCTGGCGATGGACGAGGAGGGGACGCGGGTGCTCAACATCACCGTGCTCCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGGCCACGTCACGCTCTACGACTTCGACACCAACCTCAACCAGTGGAGCCGGAAGGATGTGGAGGGGTCGCTCTTCGTTGTCAAGAGGAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGATAATTTAGTTGAAGATCTCCTGGGAGATTTTGAATATCAGCTTCAGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATTAAAAGTGAATTTGAAGAGCTGGAAGCAGCACCTACTTTGGTTGAAGGTCCACTAGAGCCTCAAACATCGAATATCATACCAGCTACTACCCATGTCCAGGAGGATCCGTTATCTGCATTCTTCAGTGGAGCTATAAATGTTGGCAGTGCCTCTGGTTTATCAGTTGCAGGACAGTTAAATCAATCTTTTGGATCTACTCCTTTATCTTCACATGCACCAACAAGTATCAGTATATCTCAGCCTCCAGCTGTGCACCATTTGCTCCCTTCTCAAACTTCATCAGTAATATCCCCTGATGTTCATGGTGGAACTGGTGCTGTGGTCAACAGGTCAGCAAGCCTTCTAAATCCATCACTTTTTTCACCATTGACATCTTCTCAGACAACAATGGCCCGCACCAATCCTGTGGCACCTACTGCTCCACCTCAACATCCTCGCATCACTCAGCAACCACACAGTGCTCCCTTGCTTCAACCCTTTCCGTTACCTACAGCATCGCCTTCTCCACCATATGGGACTCCGTTACTTCAACCATTTCCGCCACCAAATCCATCCCCATCTCTTGCATCAGCACCGGTGTACAGCCCAGTACTGTCCAGAGAAAAAGTCAGGGATGCATTACTTAGGCTTGTTGAGAATGATGATTTCATCGATTTAGTCTACCGGGAGATTGTGAAAGGATAG
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| Protein seq | MAHGGGGRAKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWSRKDVEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTLVEGPLEPQTSNIIPATTHVQEDPLSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVHHLLPSQTSSVISPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPSPSLASAPVYSPVLSREKVRDALLRLVENDDFIDLVYREIVKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.153716 | 0.046353 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0249600 | RBH | 1.514679 | 1.629544 | 3.274216 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g14580 | RBH | 1.012601 | 1.110853 | 0.825194 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0249600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009000 | RBH | 0.517398 | 5.966047 | 4.501808 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009150 | RBH | 0.359647 | 0.000000 | 3.578997 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008990 | RBH | 0.547654 | 5.849067 | 9.886062 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041230 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0008920 | RBH | 2.399649 | 9.924335 | 7.307189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0145700 | RBH | 5.5061455 | 6.743451 | 6.5852145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009400 | RBH | 0.092746 | 0.345783 | 0.446970 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0146900 | RBH | 4.8017335 | 6.5339495 | 13.681797 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0008860 | RBH | 0.278058 | 0.114929 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008890 | RBH | 0.402162 | 8.696749 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008880 | RBH | 4.896113 | 3.749555 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009020 | RBH | 0.548267 | 0.538990 | 2.183844 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0008910 | RBH | 0.243703 | 3.974669 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G008910 | RBH | 0.100087 | 1.824378 | 3.977962 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008830 | RBH | 0.686970 | 2.832911 | 7.933875 |
