Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsARC_06g0023490		OGI:06073890 \| 16/16			ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)			Chr06:27006827-27011884		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ttgttttttatctaaaaccaatctctgttttgaagtaaatgcagatgcagaagtagcatagtacaggtttacaggctcatggagtatacaactcagaaaacacaattacaagggtctaagtaatgaaatcatcaaaagctagtgttcttatcttctaaaaaaaactagtgctcttttgaaagtcaaaataaggacaaatttcaacttagttcgtacatccgaagccaagaaatttgattgaatttcgacaaagaaatcaaccgtctcatctagctcgtctccgtgttaggaacaggaacactaacagtagcatgcagccacagatcgctcttcctcctcgccgtgatcccgagcccctctgccatgtccagctcgccggcggcggcgcctccggcgagctcccagtcgaagtggaagaggaggctcgcgagcccgagctccatgatggcgacggcgaatgccacgccggggcacatcctccggccggccccgaacggcacgaactcgaagtccgtccccttgaagtccaccgcgccgccgtcgaacctctctggcctgaactcctcggcgtcggggccccagaccgcggtgtcgcggcagatcgcccacgcgttgactagcaccatggcacgctccggcacgtcgtagccgagcacgcggaggcgtggctcctggcactcccgcgggaggaggagtggcaccgcgacgtggaggcggagcgtctccttgatgacgaggtggaggtagtggaggtccgggagggcgtcctccgtgacgtgggagtgcccggcgaggacgccgcgcacctccgcctgcgccttgcggagcgccgccgggttccgcatcagctccgccatcgcccattgcagcgtcgtccccgtcgtctcgctccccgcgctgaagagatcctacatggtggacggcgacggcttgtcaatttcgtcgaacaccttggagggagaagaatttggtcgaacacttgtggggagagagggtgggagagcttacgatgattatagcacggatggtgcccatgtcgagagggatctggaggccgccatccttctgggtccggaggagcacgtcgaggaggtcctcgtcttcctcgtcgcgccacccggtggcggccctcctctggcggtgctcctcgatgacgccgtccatgagacgggtcatctcgcggctgtgcgcctcggcccgccgcgccgtcccgctgagcgcgcgggcgaggcgcgacgacgggaacacgtcggcgagggtgaacccggcggccaccttgacgccctcctccagcctctccaagaacgcgtcgcggtcactgatccggtcacccaccaccgcccgcaccacggcgtcggtcacgtacctggcgacgagggagctgacgttcaccggctcgggcgtcgtcgtcgacagcgacgcgacgagggcggcggcctcggcctcgcgggcgcggcggaggcagcggacgcggcgggcgccgaggagctccgtgacgcagagcttgcggaggcagcgccagtgctccccctgcggcgcgaacgcgacgccgaggccgtcgcgggtgagagcgcggagcgtcgccgtctgcggccgcgtggcgaaggcggcgtcgtgggtcctcatcacctccctcgccgcggcgggcgacgacgccacgacgacggggagctcgccgagccggagcagcatgagctcgccgtggcgggcggcaaggtcacgcagcgcgcggtgaggaagcgcgccggcgaggtggtgcaggctgccgatgaccggcagctgccatggccccggaggcgggttctcgccattgttgcgtggcctgagcttgacgaaggcgagagatagtatcagtagagtggccaagaagagatactgctccatgtttctctgtttcagctttgcagtggttgcaaactttgcaatgagaaagcaagctttataattttgcaatgagaaagtaagcttgagaagatgccaaaagaaaaattgaaatcagaatgacgcccaattcaaatgtttttgtatttctaaattcaaatttccagctgattaagggtatcgaccggtaaactcagaactttcagatattttgttcaggaattgagtttttttttcaaacggctaatcagattgacggcgttatattaatagagggaagtttagttatacatccaaacgctaaaagtaaggaaaaaactgtacatgtgtaactgtaacatgcttgcacgtcaatcctccttactcctcgtgacaacaattttcccatgtgttttgcactggccaaaccccagcatcatagctcatcatcttggaaacgaataattatttgatgatttgtagcttccttttctctaaacattctcgcattattcctttctttccccattttccagtcaatgagaaaaaggctgatttaaggccctttttttccccttcgggtggcttgtctcatgtgtccttcaatccaataaatctctactgctgttccagcttgggatgctctatccaaaaatatgtgaggatgtcaaactagatttgctttgagattgggcattattcgttcaggaatagctagccatgtcacaagctagctggatacacgaccagccatattaaacgagcaggagaatggcgagtgattagtatattactccatatggagacaagtagtcaagccctgcagcaaaggccatgtttacttagggatgcaattattttgaaacctaagccagcttttgctggttttataataagagagggagaaactgtacaaagggatgcaatttcgtttgtgcataaaccttataacatgcagtagatgctttgaacagattattaattgtttacggacgatattgtatttaaacatgcagtacatgctcggaacagattgttaattgtttacgtacgatatcgtatttaaagatgagcatgtgaattgcgattggactatagtatatcatgctatagaagattagtattcagatcaagaagcattgtggcagctaaaacaaagggcatacatatattattctgtcattttacacagcattaaacaattctccactacagttgtgccatgcttattccataacaaacaggactctgtgcatggcacgaggttgctagcagaattcagaagataaaaaatgtcctttgttcactcgatttcggttcacatagacgaggtctaagtacagttttcggaagatcaaaatgcgccataatctgattacaataggatctttctcagcttgcagcttcagtatcttgctatcttccaagctcagtatcttcagtgcggtgtagatgacaagttagcagttgtagcagcactatcacctagaagacgtctggattgcaatggccggagataatgccgtgttgcgtcgcttgggcaagatgtaatgacaggacataattcctatgctgcaagataagagatgaacaaccaagattcttgttagaacaagcattagaaataacataaaagaactgaaaattaatgaatgttgtgataaaagcacaaacctgtagcgcctttatctccttttcgtacgtgtcgataatctgcgaccgctcctgcgacattttcttttcataatcattgagccgattgtgctgtttaagaaatgcgcgcttcaggacaccgttctgttcgagaaggcctcctaacatcagcttcagtatcttgtgttcctggaagtatcagtcaagttgatcagtcaagcttccataactttcataactggaagatattgataattcaagacgacattattataactggatggagtagtatttgttacctcgcgcatcttcctcatttcaactggactgatacatgctgcagtggatttctcgaataggtcaagtaacctaaaggctcggttcttggcatcaaccaaatctagagcagaggacatctccttgacaactagctcagcccattcagacccattggatgggatgttcatcgctgacaaatcagattcaactgcaacaaccatcagtaaaagagagtttcagatttccgcaaaattaactaattggtctggaagggtaatcatgaatgaaaggaaaacaaatgttaccatacctttaggagagaccacctcgtttcctgtatcaccggaagccgcctctgtgatctcagtatcagtatgagattgcaaacgatgcttgaatcccctaattgcagcgtccaacacattaccggacgcttcaaaaaagctcttcaggagctacaaattcaaaaagagataaaaaaaatacagtatcagacaaactggcacagagatcaaattagatacaaacacaatgaacaatgatgaatcatattcaacatcaaacacaatgatcaatgctgaatcgtattcaataccaatatgatgtaacatctaaagtctcatcagtaaaatcaggattcttaagtcttaaccctctacttactaattaagtgcctgtgcaagtgcaaacatgaatcccacaaaaataatagatgcgtgctaatttctgcggctgatgattcattcataaatcacaatcctttcatctacatcgtgatcgaatagcgctcctatcctatggtgaagaagcttaaaaaaaacagagcaaccagaaaaaaacagaacagaaggtaaacaaagatcgatggatgaatcctgcaatacctgcggatcttcatgggggaagatgagctgcagcacttcgatcgggtcgaactccaaactcaccccgaggtcagccgcggaggcggccgacgacgagcaccggccgcgcttcgccaggtggtgcgacgggagggggaacgggtcgtcgaggatgtctgcgactgcgaacccgcgcttccggctgctggcggcagcgaccgtggccgccattggtgcgggcgatcggaggggagagggtgtaccggcggcgaactcctcggatcaaaggcggagagtgattcggatggagcggcgttgcggcctcgcggcccgcgtggcttgcttttataggcgagaaagccaggggaattcgagatcggagagccgagtccgattccgaagc More
CDS seq		atggcggccacggtcgctgccgccagcagccggaagcgcgggttcgcagtcgcagacatcctcgacgacccgttccccctcccgtcgcaccacctggcgaagcgcggccggtgctcgtcgtcggccgcctccgcggctgacctcggggtgagtttggagttcgacccgatcgaagtgctgcagctcatcttcccccatgaagatccgcagctcctgaagagcttttttgaagcgtccggtaatgtgttggacgctgcaattaggggattcaagcatcgtttgcaatctcatactgatactgagatcacagaggcggcttccggtgatacaggaaacgaggtggtctctcctaaagttgaatctgatttgtcagcgatgaacatcccatccaatgggtctgaatgggctgagctagttgtcaaggagatgtcctctgctctagatttggttgatgccaagaaccgagcctttaggttacttgacctattcgagaaatccactgcagcatgtatcagtccagttgaaatgaggaagatgcgcgaggaacacaagatactgaagctgatgttaggaggccttctcgaacagaacggtgtcctgaagcgcgcatttcttaaacagcacaatcggctcaatgattatgaaaagaaaatgtcgcaggagcggtcgcagattatcgacacgtacgaaaaggagataaaggcgctacagtttgcaaccactgcaaagctgaaacagagaaacatggagcagtatctcttcttggccactctactgatactatctctcgccttcgtcaagctcaggccacgcaacaatggcgagaacccgcctccggggccatggcagctgccggtcatcggcagcctgcaccacctcgccggcgcgcttcctcaccgcgcgctgcgtgaccttgccgcccgccacggcgagctcatgctgctccggctcggcgagctccccgtcgtcgtggcgtcgtcgcccgccgcggcgagggaggtgatgaggacccacgacgccgccttcgccacgcggccgcagacggcgacgctccgcgctctcacccgcgacggcctcggcgtcgcgttcgcgccgcagggggagcactggcgctgcctccgcaagctctgcgtcacggagctcctcggcgcccgccgcgtccgctgcctccgccgcgcccgcgaggccgaggccgccgccctcgtcgcgtcgctgtcgacgacgacgcccgagccggtgaacgtcagctccctcgtcgccaggtacgtgaccgacgccgtggtgcgggcggtggtgggtgaccggatcagtgaccgcgacgcgttcttggagaggctggaggagggcgtcaaggtggccgccgggttcaccctcgccgacgtgttcccgtcgtcgcgcctcgcccgcgcgctcagcgggacggcgcggcgggccgaggcgcacagccgcgagatgacccgtctcatggacggcgtcatcgaggagcaccgccagaggagggccgccaccgggtggcgcgacgaggaagacgaggacctcctcgacgtgctcctccggacccagaaggatggcggcctccagatccctctcgacatgggcaccatccgtgctataatcatcgatctcttcagcgcggggagcgagacgacggggacgacgctgcaatgggcgatggcggagctgatgcggaacccggcggcgctccgcaaggcgcaggcggaggtgcgcggcgtcctcgccgggcactcccacgtcacggaggacgccctcccggacctccactacctccacctcgtcatcaaggagacgctccgcctccacgtcgcggtgccactcctcctcccgcgggagtgccaggagccacgcctccgcgtgctcggctacgacgtgccggagcgtgccatggtgctagtcaacgcgtgggcgatctgccgcgacaccgcggtctggggccccgacgccgaggagttcaggccagagaggttcgacggcggcgcggtggacttcaaggggacggacttcgagttcgtgccgttcggggccggccggaggatgtgccccggcgtggcattcgccgtcgccatcatggagctcgggctcgcgagcctcctcttccacttcgactgggagctcgccggaggcgccgccgccggcgagctggacatggcagaggggctcgggatcacggcgaggaggaagagcgatctgtggctgcatgctactgttagtgttcctgttcctaacacggagacgagctag More
Protein seq		MAATVAAASSRKRGFAVADILDDPFPLPSHHLAKRGRCSSSAASAADLGVSLEFDPIEVLQLIFPHEDPQLLKSFFEASGNVLDAAIRGFKHRLQSHTDTEITEAASGDTGNEVVSPKVESDLSAMNIPSNGSEWAELVVKEMSSALDLVDAKNRAFRLLDLFEKSTAACISPVEMRKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIIDTYEKEIKALQFATTAKLKQRNMEQYLFLATLLILSLAFVKLRPRNNGENPPPGPWQLPVIGSLHHLAGALPHRALRDLAARHGELMLLRLGELPVVVASSPAAAREVMRTHDAAFATRPQTATLRALTRDGLGVAFAPQGEHWRCLRKLCVTELLGARRVRCLRRAREAEAAALVASLSTTTPEPVNVSSLVARYVTDAVVRAVVGDRISDRDAFLERLEEGVKVAAGFTLADVFPSSRLARALSGTARRAEAHSREMTRLMDGVIEEHRQRRAATGWRDEEDEDLLDVLLRTQKDGGLQIPLDMGTIRAIIIDLFSAGSETTGTTLQWAMAELMRNPAALRKAQAEVRGVLAGHSHVTEDALPDLHYLHLVIKETLRLHVAVPLLLPRECQEPRLRVLGYDVPERAMVLVNAWAICRDTAVWGPDAEEFRPERFDGGAVDFKGTDFEFVPFGAGRRMCPGVAFAVAIMELGLASLLFHFDWELAGGAAAGELDMAEGLGITARRKSDLWLHATVSVPVPNTETS
Function		Dolabradiene monooxygenase [UniProtKB/Swiss-Prot:A0A1D6GQ67]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsARC_06g0023490	OsARC_06g0023490.01	Chr06	27006827	27011884	-	NAM
CDS seq	atggcggccacggtcgctgccgccagcagccggaagcgcgggttcgcagtcgcagacatcctcgacgacccgttccccctcccgtcgcaccacctggcgaagcgcggccggtgctcgtcgtcggccgcctccgcggctgacctcggggtgagtttggagttcgacccgatcgaagtgctgcagctcatcttcccccatgaagatccgcagctcctgaagagcttttttgaagcgtccggtaatgtgttggacgctgcaattaggggattcaagcatcgtttgcaatctcatactgatactgagatcacagaggcggcttccggtgatacaggaaacgaggtggtctctcctaaagttgaatctgatttgtcagcgatgaacatcccatccaatgggtctgaatgggctgagctagttgtcaaggagatgtcctctgctctagatttggttgatgccaagaaccgagcctttaggttacttgacctattcgagaaatccactgcagcatgtatcagtccagttgaaatgaggaagatgcgcgaggaacacaagatactgaagctgatgttaggaggccttctcgaacagaacggtgtcctgaagcgcgcatttcttaaacagcacaatcggctcaatgattatgaaaagaaaatgtcgcaggagcggtcgcagattatcgacacgtacgaaaaggagataaaggcgctacagtttgcaaccactgcaaagctgaaacagagaaacatggagcagtatctcttcttggccactctactgatactatctctcgccttcgtcaagctcaggccacgcaacaatggcgagaacccgcctccggggccatggcagctgccggtcatcggcagcctgcaccacctcgccggcgcgcttcctcaccgcgcgctgcgtgaccttgccgcccgccacggcgagctcatgctgctccggctcggcgagctccccgtcgtcgtggcgtcgtcgcccgccgcggcgagggaggtgatgaggacccacgacgccgccttcgccacgcggccgcagacggcgacgctccgcgctctcacccgcgacggcctcggcgtcgcgttcgcgccgcagggggagcactggcgctgcctccgcaagctctgcgtcacggagctcctcggcgcccgccgcgtccgctgcctccgccgcgcccgcgaggccgaggccgccgccctcgtcgcgtcgctgtcgacgacgacgcccgagccggtgaacgtcagctccctcgtcgccaggtacgtgaccgacgccgtggtgcgggcggtggtgggtgaccggatcagtgaccgcgacgcgttcttggagaggctggaggagggcgtcaaggtggccgccgggttcaccctcgccgacgtgttcccgtcgtcgcgcctcgcccgcgcgctcagcgggacggcgcggcgggccgaggcgcacagccgcgagatgacccgtctcatggacggcgtcatcgaggagcaccgccagaggagggccgccaccgggtggcgcgacgaggaagacgaggacctcctcgacgtgctcctccggacccagaaggatggcggcctccagatccctctcgacatgggcaccatccgtgctataatcatcgatctcttcagcgcggggagcgagacgacggggacgacgctgcaatgggcgatggcggagctgatgcggaacccggcggcgctccgcaaggcgcaggcggaggtgcgcggcgtcctcgccgggcactcccacgtcacggaggacgccctcccggacctccactacctccacctcgtcatcaaggagacgctccgcctccacgtcgcggtgccactcctcctcccgcgggagtgccaggagccacgcctccgcgtgctcggctacgacgtgccggagcgtgccatggtgctagtcaacgcgtgggcgatctgccgcgacaccgcggtctggggccccgacgccgaggagttcaggccagagaggttcgacggcggcgcggtggacttcaaggggacggacttcgagttcgtgccgttcggggccggccggaggatgtgccccggcgtggcattcgccgtcgccatcatggagctcgggctcgcgagcctcctcttccacttcgactgggagctcgccggaggcgccgccgccggcgagctggacatggcagaggggctcgggatcacggcgaggaggaagagcgatctgtggctgcatgctactgttagtgttcctgttcctaacacggagacgagctag More
Protein seq	MAATVAAASSRKRGFAVADILDDPFPLPSHHLAKRGRCSSSAASAADLGVSLEFDPIEVLQLIFPHEDPQLLKSFFEASGNVLDAAIRGFKHRLQSHTDTEITEAASGDTGNEVVSPKVESDLSAMNIPSNGSEWAELVVKEMSSALDLVDAKNRAFRLLDLFEKSTAACISPVEMRKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIIDTYEKEIKALQFATTAKLKQRNMEQYLFLATLLILSLAFVKLRPRNNGENPPPGPWQLPVIGSLHHLAGALPHRALRDLAARHGELMLLRLGELPVVVASSPAAAREVMRTHDAAFATRPQTATLRALTRDGLGVAFAPQGEHWRCLRKLCVTELLGARRVRCLRRAREAEAAALVASLSTTTPEPVNVSSLVARYVTDAVVRAVVGDRISDRDAFLERLEEGVKVAAGFTLADVFPSSRLARALSGTARRAEAHSREMTRLMDGVIEEHRQRRAATGWRDEEDEDLLDVLLRTQKDGGLQIPLDMGTIRAIIIDLFSAGSETTGTTLQWAMAELMRNPAALRKAQAEVRGVLAGHSHVTEDALPDLHYLHLVIKETLRLHVAVPLLLPRECQEPRLRVLGYDVPERAMVLVNAWAICRDTAVWGPDAEEFRPERFDGGAVDFKGTDFEFVPFGAGRRMCPGVAFAVAIMELGLASLLFHFDWELAGGAAAGELDMAEGLGITARRKSDLWLHATVSVPVPNTETS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsARC_06g0023490	OsARC_06g0023490.02	Chr06	27009788	27011798	-	IsoSeq
CDS seq	aacgccgctccatccgaatcactctccgcctttgatccgaggagttcgccgccggtacaccctctcccctccgatcgcccgcaccaatggcggccacggtcgctgccgccagcagccggaagcgcgggttcgcagtcgcagacatcctcgacgacccgttccccctcccgtcgcaccacctggcgaagcgcggccggtgctcgtcgtcggccgcctccgcggctgacctcg More
Protein seq	NAAPSESLSAFDPRSSPPVHPLPSDRPHQWRPRSLPPAAGSAGSQSQTSSTTRSPSRRTTWRSAAGARRRPPPRLTS

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.085836	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0642600	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os06g43520	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0642600	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0023940	RBH	0.0	0.0	0.469784
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0023750	RBH	0.0	0.398299	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0023930	RBH	0.0	0.825728	0.245222
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0006370	SBH	0.011247	0.020465	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0023950	RBH	0.0	1.280344	1.468232
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0409800	RBH	0.0242005	0.3289995	0.034722
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0023430	RBH	0.0	0.059275	0.508227
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0391300	RBH	0.0187495	0.3052605	0.3541825
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0023880	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0023820	RBH	0.0	1.112312	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0023500	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0024150	RBH	0.0	0.000000	0.540184
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0023740	RBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G023550	RBH	0.0	0.659570	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0023760	RBH	0.0	0.0	3.323550

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.