Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_06g0022300 | OGI:06070600 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr06:25777156-25780477 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcataacgcccttgtaatttgcaagagatggatcagacgttcattatgactttgagtaactacatgcacaaaaacttaaatcaatcgtacagaaaaaaaaatgacagcacatgaccaatttatggagaaattatgatacaaccgctaggagaccaaccaatcaaccgtgacatcctaacccaattagatgcggcgtggcccataaaagctgtgtacgcatgtttattaccaccttactagtttagcaaggtgaaacaacttataagggcttgtccctctaactatgccacttccaggttaacccttttacacgaagtgaggacgaatgtgtacgtggagtggtatgtgtaagtagaccagcctgtcggttgggctgggctatgcggttctggagatagagccattacaaatgttatcagagccgaccctcgcggttgcgcgggttagtgtgttatggtgcatggcgcatgtggcttctatgtgagacacatggcatgacatatagcaccagcattggacgtgtgctaagaaggggcgtgttgctggatatttgcctatatgcatgtgtggctacgtgggtgagtttatatgcatgtgtggctatgtgggtgagttggtccagtgctaagagggggcgtgttccttgatatttgcctatatgcatgtgtggttatgtgggtgagctgtatgcatgtgtggctatgtgggtgagatgtatgcatgtgttcctaagagagggcatgtttctggacattatgcatgtgtggctatgtggtgagttggtccagtgctaagagggggtatgtttctggacatttgcatgtgtggttatgtgggtgagttggtccagtgctaagagggggcatgtttctggacatttgcctatcttcctggtggttatgtgggtgagttggtccaatgctaagagggagcatgttcctgtacatttgtctatatgcttgtgtggctatgtggtgagttggaccgacaggacataagtcctttgagggaggtgtacgtgacattctggcccaattaagatgcggcatgtgtggcccatgagagctgtgtgcgtatgtttattaacaccttgctaatttagtaaaggtgaaaccaacttataagccttgtctcttcaaccatgccactctcgggttaacccttttacacgaagcgaggacgaaaatgtaagtgtgaaatggtatgtgtaattgggcccacccgtcggttgggctaggctacgcggttctatagggctgttacatcaactgatactaataaagcataagttgcaacgtgtgtggtgcatccaatgtgttcttccagaatcacaatcaagttatccttcaagaataaaaaataatttccttgatgaggaataaccgtgactaactttaatgagttgcacaatcattattcggttgaacagtgtgtggtgcatccaatgtgttaacatccgtaaatgcaccagcatgataaattggtaatacgatgttcgatttcctgtcttttaggaaaaacgagtccggtttaaaatggaacaaatatacaagcacatgaatttcagcagctgcacagttgcgcaggtagggccatgatgcaaaatgatcaacatatcacaacagctcatattaccctcggagagcttactaagggaaactggacgagcttgctgcagaatcagttgcatgaactcgattgccctgaatggaaatcctggtaagatcatccgccataagtacttctttggctatctctgcagtagattggaatcaataggagtcagtcaattgacgttttatttttgcaacaaagaaattgtagattcatcatcatcaaaattcaaatattatgtgcctgaatttcacagacagcaatccgaggatgggagatgtttaccttcgatatcttctattgatttatcagcaaagaaacaaaacggcaacacttcatacttctcccattcactaccatttttctggtcaaactgttcctccagcactggatggcatccagccaaatacaaacaattaagggacacaggaagaccatcttctggtaaagaaactacttcagggcagttttttatgatcaagactctgagggaagagaaactaatcatctgaggcaaagccattaacttcatacaatttctgaccaccagttttgagaggaaagaaaggtctcgcaggttcctcagtgatattagcgcgttgcagtgttccacaaccagtgcagttaatgttgttaggttaccattttcaggtagttccttgagctcagggcaattctttatgatcaagttctggagggctggaagacacctaaagtctggcactgacgttaacttggggcaacttgcaatttctattgtgcttaaccttaagaatgtttctaggcccatgaaagctgtcaacccatcacagcttaaaatacacagcttctcaagtactccagtcactgactttggcatggccaacacacgttcaggagttgaataagtgatgttgcaatcgtttatccacaatgaaaggaaactaatgttctgaaacacactaagaaaaatgtccactgtcaggttgcagccaatcattttgagacattgaatagatgccgaagaaaagccattcccatcctcttcccgctgtttactagctgcaaaagcatgctgcagatcagaacatcccctgataaccaactcttcaagggatggcagatttgttgttacatctttaagtccatcttccagagtgtttgctccttcaaagatgatatttacacatttcacaggttccagacgacgaagatgcaacatatccaagagtgtgcttaagctcacctcctgagtaaaacatgtctccaggcgattatgatttcgcagcctgcaaacttcggtagatacatatatactcattcttacaggtgggagaacaactggtggcaattgtttcagcttggggcatcctctgatgcacacctcaagaagagcaggaaaaaaacagtccacagaagaccattctgccaattctggcaactctatcatttctagaatctccagtgagggaaagccagcagtcccataaaactcggggcctatacaaaccactgcattcagtctagcaatacgaagtgtcctgagagattgtatttggcctaaagatggaagcaacttccaacacttgcaatcagaaatgctaatgtgtctcagtctagagagccactctgactccaaccaagatggaagcaacttccaacacttgcaatcagaaatgctgctcaaggtgcccaagcacttaggaaaagtaacaagtcgcctgtccat
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| CDS seq | atggacaggcgacttgttacttttcctaagtgcttgggcaccttgagcagcatttctgattgcaagtgttggaagttgcttccatcttggttggagtcagagtggctctctagactgagacacattagcatttctgattgcaagtgttggaagttgcttccatctttaggccaaatacaatctctcaggacacttcgtattgctagactgaatgcagtggtttgtataggccccgagttttatgggactgctggctttccctcactggagattctagaaatgatagagttgccagaattggcagaatggtcttctgtggactgtttttttcctgctcttcttgaggtgtgcatcagaggatgccccaagctgaaacaattgccaccagttgttctcccacctgtaagaatgagtatatatgtatctaccgaagtttgcaggctgcgaaatcataatcgcctggagacatgttttactcaggaggtgagcttaagcacactcttggatatgttgcatcttcgtcgtctggaacctgtgaaatgtgtaaatatcatctttgaaggagcaaacactctggaagatggacttaaagatgtaacaacaaatctgccatcccttgaagagttggttatcaggggatgttctgatctgcagcatgcttttgcagctagtaaacagcgggaagaggatgggaatggcttttcttcggcatctattcaatgtctcaaaatgattggctgcaacctgacagtggacatttttcttagtgtgtttcagaacattagtttcctttcattgtggataaacgattgcaacatcacttattcaactcctgaacgtgtgttggccatgccaaagtcagtgactggagtacttgagaagctgtgtattttaagctgtgatgggttgacagctttcatgggcctagaaacattcttaaggttaagcacaatagaaattgcaagttgccccaagttaacgtcagtgccagactttaggtgtcttccagccctccagaacttgatcataaagaattgccctgagctcaaggaactacctgaaaatggtaacctaacaacattaactgcactggttgtggaacactgcaacgcgctaatatcactgaggaacctgcgagacctttctttcctctcaaaactggtggtcagaaattgtatgaagttaatggctttgcctcagatgattagtttctcttccctcagagtcttgatcataaaaaactgccctgaagtagtttctttaccagaagatggtcttcctgtgtcccttaattgtttgtatttggctggatgccatccagtgctggaggaacagtttgaccagaaaaatggtagtgaatgggagaagtatgaagtgttgccgttttgtttctttgctgataaatcaatagaagatatcgaagttactcaaagtcataatgaacgtctgatccatctcttgcaaattacaagggcgttatga
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| Protein seq | MDRRLVTFPKCLGTLSSISDCKCWKLLPSWLESEWLSRLRHISISDCKCWKLLPSLGQIQSLRTLRIARLNAVVCIGPEFYGTAGFPSLEILEMIELPELAEWSSVDCFFPALLEVCIRGCPKLKQLPPVVLPPVRMSIYVSTEVCRLRNHNRLETCFTQEVSLSTLLDMLHLRRLEPVKCVNIIFEGANTLEDGLKDVTTNLPSLEELVIRGCSDLQHAFAASKQREEDGNGFSSASIQCLKMIGCNLTVDIFLSVFQNISFLSLWINDCNITYSTPERVLAMPKSVTGVLEKLCILSCDGLTAFMGLETFLRLSTIEIASCPKLTSVPDFRCLPALQNLIIKNCPELKELPENGNLTTLTALVVEHCNALISLRNLRDLSFLSKLVVRNCMKLMALPQMISFSSLRVLIIKNCPEVVSLPEDGLPVSLNCLYLAGCHPVLEEQFDQKNGSEWEKYEVLPFCFFADKSIEDIEVTQSHNERLIHLLQITRAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0022300 | OsARC_06g0022300.01 | Chr06 | 25777156 | 25780477 | - | NAM | ||
| CDS seq | atggacaggcgacttgttacttttcctaagtgcttgggcaccttgagcagcatttctgattgcaagtgttggaagttgcttccatcttggttggagtcagagtggctctctagactgagacacattagcatttctgattgcaagtgttggaagttgcttccatctttaggccaaatacaatctctcaggacacttcgtattgctagactgaatgcagtggtttgtataggccccgagttttatgggactgctggctttccctcactggagattctagaaatgatagagttgccagaattggcagaatggtcttctgtggactgtttttttcctgctcttcttgaggtgtgcatcagaggatgccccaagctgaaacaattgccaccagttgttctcccacctgtaagaatgagtatatatgtatctaccgaagtttgcaggctgcgaaatcataatcgcctggagacatgttttactcaggaggtgagcttaagcacactcttggatatgttgcatcttcgtcgtctggaacctgtgaaatgtgtaaatatcatctttgaaggagcaaacactctggaagatggacttaaagatgtaacaacaaatctgccatcccttgaagagttggttatcaggggatgttctgatctgcagcatgcttttgcagctagtaaacagcgggaagaggatgggaatggcttttcttcggcatctattcaatgtctcaaaatgattggctgcaacctgacagtggacatttttcttagtgtgtttcagaacattagtttcctttcattgtggataaacgattgcaacatcacttattcaactcctgaacgtgtgttggccatgccaaagtcagtgactggagtacttgagaagctgtgtattttaagctgtgatgggttgacagctttcatgggcctagaaacattcttaaggttaagcacaatagaaattgcaagttgccccaagttaacgtcagtgccagactttaggtgtcttccagccctccagaacttgatcataaagaattgccctgagctcaaggaactacctgaaaatggtaacctaacaacattaactgcactggttgtggaacactgcaacgcgctaatatcactgaggaacctgcgagacctttctttcctctcaaaactggtggtcagaaattgtatgaagttaatggctttgcctcagatgattagtttctcttccctcagagtcttgatcataaaaaactgccctgaagtagtttctttaccagaagatggtcttcctgtgtcccttaattgtttgtatttggctggatgccatccagtgctggaggaacagtttgaccagaaaaatggtagtgaatgggagaagtatgaagtgttgccgttttgtttctttgctgataaatcaatagaagatatcgaagttactcaaagtcataatgaacgtctgatccatctcttgcaaattacaagggcgttatga
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| Protein seq | MDRRLVTFPKCLGTLSSISDCKCWKLLPSWLESEWLSRLRHISISDCKCWKLLPSLGQIQSLRTLRIARLNAVVCIGPEFYGTAGFPSLEILEMIELPELAEWSSVDCFFPALLEVCIRGCPKLKQLPPVVLPPVRMSIYVSTEVCRLRNHNRLETCFTQEVSLSTLLDMLHLRRLEPVKCVNIIFEGANTLEDGLKDVTTNLPSLEELVIRGCSDLQHAFAASKQREEDGNGFSSASIQCLKMIGCNLTVDIFLSVFQNISFLSLWINDCNITYSTPERVLAMPKSVTGVLEKLCILSCDGLTAFMGLETFLRLSTIEIASCPKLTSVPDFRCLPALQNLIIKNCPELKELPENGNLTTLTALVVEHCNALISLRNLRDLSFLSKLVVRNCMKLMALPQMISFSSLRVLIIKNCPEVVSLPEDGLPVSLNCLYLAGCHPVLEEQFDQKNGSEWEKYEVLPFCFFADKSIEDIEVTQSHNERLIHLLQITRAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0619000 | SBH | 0.568805 | 0.744070 | 1.235759 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41690 | RBH | 0.000000 | 0.062144 | 0.059284 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0619000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022720 | RBH | 0.111390 | 0.000000 | 0.545171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022550 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022640 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022290 | SBH | 0.038255 | 0.053408 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022740 | RBH | 0.163133 | 0.000000 | 0.679083 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0392300 | RBH | 0.072727 | 0.275819 | 0.110825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022190 | RBH | 0.0 | 0.024995 | 0.283764 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0372300 | RBH | 0.01749 | 0.0182435 | 0.4734415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022660 | RBH | 0.037759 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022570 | RBH | 0.0 | 0.470782 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022960 | RBH | 0.0 | 0.026449 | 0.104927 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022560 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022520 | RBH | 0.074060 | 0.0 | 0.611186 |
