Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_06g0008880 | OGI:06018800 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr06:6843105-6844643 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACCAGTAATCTTTACACGAACACATGCCATCCTTGAAATGATGGAACCGGCTCCTGTCCCTAACCACGATCTCACGCCCAAACACGCGAGACACGTACTTGGTCGCCTCGTGGCAATCCCTACAAACTCTCAAGTTCTTGGTGATTCGCAGCGTCTCGCGCGGCCTCGCGCGCAGCAGCCCGAAGGCGATCGCGAGCTTCTCGCTGTGGCACAGCAGCGCCGCCTCCTTGTCTTCCTCGGCGACGTCGTGCAGCGCCTCGCCGGTGTCCGGCACGTACCCCTCGGCCCGGATCCTGCTCACCATGTCCACGGCCATGGCGTAGATCTCCCGAGCCTGTGGGTGGCGCAGGTTCCCGCACCGGAACTCGCAGGCCTCGCCGTCGACCTCGATCACCGACCGCCCGGCCTCCTTGCTCACGTTCCGCTCGTCCATCAGCCGCCGGACCTTGCCCACCTCGTCCCACCGGCCGGCGCCGGCGAGCAGGTTTGCGAGGAGCACGTAGCGGCCGCTGTTGTCCGGGTCGAGGTCTATGACGCGCCACCCGATCGCCTCGCCGAGGTCGACGTCGCCGTGGATCTTGCATGCGCCGAGGAGCGCGCCGAGGACGGCGAGGTCGGGATCCATTGGCATTTCGTCGATCACCTTCTTGGCTTCGTCTAGCTGGCCTGCTCTCCCGAACAGGTCGACCATGCAGCCGTAGTGCTCTCCCTTGGGCTCGATGCCGTGGCGAGACACGATGTGGTTGAGGTAGCGGCGGCCTTCGCTGACCTCGCCGGCGTGCGCGCACGCCGTGAGCACGTTCAGCAGCGTGACGTCGTCGGGCGCCACGCCTGCGGCCTCCATTTGGTGGAATAGCTCGAGCGCGTCGTCGCACCTCCCGTGCACCGCGAACCCGCCGATCATGCAGTTCCACGTCGTGAGCCCCCTCGCCGGCAGCGAGTCGAACACGCGCCATGCCTCGTCGACGCACCCGCACTTGCAGTACATGTCGACCACCGCCGTCGCCAGCTTGGCGTCCACCTCGATCCCGCTCTGCTCCACCCACCTGTATATCTCCCTACCGCGACCCAGCGCGCCCGCGCCCGTGCAAGCCACCAGCGCGCTCGTCGCCACAAACCCGTTCCCCTCCACTCCCAGCGCCCGCATTTCGTCGAACACCTCCAACGCATCCAAGAACCGGTCGGCCTTGACGTAGCCCGAGATCATGGAGTTCCAGGAGACCAGGTTCCTCGCGGGCATCGCATCGAACACCTCCCGCGCATCGTCCACGAGGCCGAGCCTGCACAGCCCGCCCACCATTGTCGTCCACGACACGACGTCGAGCGCGCCGCCGCCGCTGGTGCGGAAGAGCACGCGGGCGAGGTCGGGGCGCGCGGCGGCGAGGTAGGCGGTGAGGAGCGCGTTGAGCGAGTGGGCGTGGGAGTGGAGGTTGAGCTTGAGGAGGAGCGCGTGGAGCTGGGCGGCGAGCGGGAGCGGCGCGGCGGGGAGGAGGCGGGGGAAGGTGAAGTGGTCGGGGAGGAGCGGGAGGGAGAGCAT
More
|
||||||||||
| CDS seq | ATGCTCTCCCTCCCGCTCCTCCCCGACCACTTCACCTTCCCCCGCCTCCTCCCCGCCGCGCCGCTCCCGCTCGCCGCCCAGCTCCACGCGCTCCTCCTCAAGCTCAACCTCCACTCCCACGCCCACTCGCTCAACGCGCTCCTCACCGCCTACCTCGCCGCCGCGCGCCCCGACCTCGCCCGCGTGCTCTTCCGCACCAGCGGCGGCGGCGCGCTCGACGTCGTGTCGTGGACGACAATGGTGGGCGGGCTGTGCAGGCTCGGCCTCGTGGACGATGCGCGGGAGGTGTTCGATGCGATGCCCGCGAGGAACCTGGTCTCCTGGAACTCCATGATCTCGGGCTACGTCAAGGCCGACCGGTTCTTGGATGCGTTGGAGGTGTTCGACGAAATGCGGGCGCTGGGAGTGGAGGGGAACGGGTTTGTGGCGACGAGCGCGCTGGTGGCTTGCACGGGCGCGGGCGCGCTGGGTCGCGGTAGGGAGATATACAGGTGGGTGGAGCAGAGCGGGATCGAGGTGGACGCCAAGCTGGCGACGGCGGTGGTCGACATGTACTGCAAGTGCGGGTGCGTCGACGAGGCATGGCGCGTGTTCGACTCGCTGCCGGCGAGGGGGCTCACGACGTGGAACTGCATGATCGGCGGGTTCGCGGTGCACGGGAGGTGCGACGACGCGCTCGAGCTATTCCACCAAATGGAGGCCGCAGGCGTGGCGCCCGACGACGTCACGCTGCTGAACGTGCTCACGGCGTGCGCGCACGCCGGCGAGGTCAGCGAAGGCCGCCGCTACCTCAACCACATCGTGTCTCGCCACGGCATCGAGCCCAAGGGAGAGCACTACGGCTGCATGGTCGACCTGTTCGGGAGAGCAGGCCAGCTAGACGAAGCCAAGAAGGTGATCGACGAAATGCCAATGGATCCCGACCTCGCCGTCCTCGGCGCGCTCCTCGGCGCATGCAAGATCCACGGCGACGTCGACCTCGGCGAGGCGATCGGGTGGCGCGTCATAGACCTCGACCCGGACAACAGCGGCCGCTACGTGCTCCTCGCAAACCTGCTCGCCGGCGCCGGCCGGTGGGACGAGGTGGGCAAGGTCCGGCGGCTGATGGACGAGCGGAACGTGAGCAAGGAGGCCGGGCGGTCGGTGATCGAGGTCGACGGCGAGGCCTGCGAGTTCCGGTGCGGGAACCTGCGCCACCCACAGGCTCGGGAGATCTACGCCATGGCCGTGGACATGGTGAGCAGGATCCGGGCCGAGGGGTACGTGCCGGACACCGGCGAGGCGCTGCACGACGTCGCCGAGGAAGACAAGGAGGCGGCGCTGCTGTGCCACAGCGAGAAGCTCGCGATCGCCTTCGGGCTGCTGCGCGCGAGGCCGCGCGAGACGCTGCGAATCACCAAGAACTTGAGAGTTTGTAGGGATTGCCACGAGGCGACCAAGTACGTGTCTCGCGTGTTTGGGCGTGAGATCGTGGTTAGGGACAGGAGCCGGTTCCATCATTTCAAGGATGGCATGTGTTCGTGTAAAGATTACTGGTAA
More
|
||||||||||
| Protein seq | MLSLPLLPDHFTFPRLLPAAPLPLAAQLHALLLKLNLHSHAHSLNALLTAYLAAARPDLARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At5g06540 [UniProtKB/Swiss-Prot:Q9FG16] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0008880 | OsARC_06g0008880.01 | Chr06 | 6843105 | 6844643 | - | NAM | ||
| CDS seq | ATGCTCTCCCTCCCGCTCCTCCCCGACCACTTCACCTTCCCCCGCCTCCTCCCCGCCGCGCCGCTCCCGCTCGCCGCCCAGCTCCACGCGCTCCTCCTCAAGCTCAACCTCCACTCCCACGCCCACTCGCTCAACGCGCTCCTCACCGCCTACCTCGCCGCCGCGCGCCCCGACCTCGCCCGCGTGCTCTTCCGCACCAGCGGCGGCGGCGCGCTCGACGTCGTGTCGTGGACGACAATGGTGGGCGGGCTGTGCAGGCTCGGCCTCGTGGACGATGCGCGGGAGGTGTTCGATGCGATGCCCGCGAGGAACCTGGTCTCCTGGAACTCCATGATCTCGGGCTACGTCAAGGCCGACCGGTTCTTGGATGCGTTGGAGGTGTTCGACGAAATGCGGGCGCTGGGAGTGGAGGGGAACGGGTTTGTGGCGACGAGCGCGCTGGTGGCTTGCACGGGCGCGGGCGCGCTGGGTCGCGGTAGGGAGATATACAGGTGGGTGGAGCAGAGCGGGATCGAGGTGGACGCCAAGCTGGCGACGGCGGTGGTCGACATGTACTGCAAGTGCGGGTGCGTCGACGAGGCATGGCGCGTGTTCGACTCGCTGCCGGCGAGGGGGCTCACGACGTGGAACTGCATGATCGGCGGGTTCGCGGTGCACGGGAGGTGCGACGACGCGCTCGAGCTATTCCACCAAATGGAGGCCGCAGGCGTGGCGCCCGACGACGTCACGCTGCTGAACGTGCTCACGGCGTGCGCGCACGCCGGCGAGGTCAGCGAAGGCCGCCGCTACCTCAACCACATCGTGTCTCGCCACGGCATCGAGCCCAAGGGAGAGCACTACGGCTGCATGGTCGACCTGTTCGGGAGAGCAGGCCAGCTAGACGAAGCCAAGAAGGTGATCGACGAAATGCCAATGGATCCCGACCTCGCCGTCCTCGGCGCGCTCCTCGGCGCATGCAAGATCCACGGCGACGTCGACCTCGGCGAGGCGATCGGGTGGCGCGTCATAGACCTCGACCCGGACAACAGCGGCCGCTACGTGCTCCTCGCAAACCTGCTCGCCGGCGCCGGCCGGTGGGACGAGGTGGGCAAGGTCCGGCGGCTGATGGACGAGCGGAACGTGAGCAAGGAGGCCGGGCGGTCGGTGATCGAGGTCGACGGCGAGGCCTGCGAGTTCCGGTGCGGGAACCTGCGCCACCCACAGGCTCGGGAGATCTACGCCATGGCCGTGGACATGGTGAGCAGGATCCGGGCCGAGGGGTACGTGCCGGACACCGGCGAGGCGCTGCACGACGTCGCCGAGGAAGACAAGGAGGCGGCGCTGCTGTGCCACAGCGAGAAGCTCGCGATCGCCTTCGGGCTGCTGCGCGCGAGGCCGCGCGAGACGCTGCGAATCACCAAGAACTTGAGAGTTTGTAGGGATTGCCACGAGGCGACCAAGTACGTGTCTCGCGTGTTTGGGCGTGAGATCGTGGTTAGGGACAGGAGCCGGTTCCATCATTTCAAGGATGGCATGTGTTCGTGTAAAGATTACTGGTAA
More
|
|||||||
| Protein seq | MLSLPLLPDHFTFPRLLPAAPLPLAAQLHALLLKLNLHSHAHSLNALLTAYLAAARPDLARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKDYW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.205911 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0231400 | RBH | 0.721163 | 1.632859 | 0.246061 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02200 | SBH | 0.341014 | 0.712315 | 0.116281 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0231400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008900 | RBH | 0.203427 | 0.0 | 0.350584 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008770 | RBH | 0.213044 | 0.000000 | 0.210234 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008780 | RBH | 1.252681 | 0.0 | 0.732004 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0034650 | RBH | 0.229904 | 0.666476 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008880 | RBH | 1.009819 | 0.0 | 1.152867 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0113100 | RBH | 2.9270895 | 1.711654 | 2.68353 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0008480 | RBH | 0.247593 | 0.0 | 0.068129 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0114200 | RBH | 2.655593 | 1.557064 | 1.9437225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008960 | RBH | 0.285692 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008770 | RBH | 0.205638 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008820 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008880 | RBH | 0.083674 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008710 | RBH | 0.422716 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G008600 | RBH | 0.129429 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008900 | RBH | 0.787268 | 0.000000 | 1.295936 |
