Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_06g0000630 | OGI:06001190 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr06:542166-543492 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCAACAGCAAAAAAAAAAAAGCAATTTATTAAGGTAGTACTAGTCAGACAGGGATATCCCCACCCCCAACAGACTAGAAATACCGACATGTGCAAGATTCTTATTGTGAATCTGCTCATGGTACATTACATATACATATAGGAGCTAGTATAAAAAAATTCCTCTATGTAATTACTTGCACTAATCTAATCTTGTCTATCATTTTTTTATGTCAAATTTCCATCTTTCTTTTCCACGGTACAGCACTCATGCAGAGCTTCTGAAAGCAGTTTGGAGAGGAAAGGCAGCCTGAGAAATAATAATAGATGGAGCCAAACCAAAACCACAAAACCAATTCCAAACTTTTCGAATTCAACCCTTTTGAATTCCCTTAAAAGAACACATACGTACACCATCTGATCTGAAATCCGCAGTGTGCTTTGCCTTGCCAAATGCGGGTTGAGCTTTTCTTCCGGAAAAACCCAACAGGAAGCACAAAATTCGGAAGAGAGACACCCTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTAGGCTGGGACTTTTGCAAAATAGACCCTGACCTTTTTTGCTCTTTTTTGTTTTTCTCTTGGAGACGGTTTGCGATGCGAGTATAATTATGCAGAAAGGACCCTGGGGCTAGGAGGCAGGGAGTGGAAGGGGCAGGAGAACGGGCGGCGCCGACGAGGGCAGCAGCGGCGAGCGGCAGAGAGGGCAGGTGCGGTGGCCGTGGTGGGCCCAGGCGTCGAGGCAGGCGCGGTGGAAGACGTGGCGGCAGCGGTGGGCGCGGCGCACCTGGGCGGACTTGTGGAAGTCGCGGAGGCAGACGGCGCAGGTGGCGACGTGGAGCGGCGGCTGCAGGGATGATGAGAGCGCGTCGAAGCGCAGCGCCGGGGAGTGGTCGTCCAGCTCCAGCAGCTGGGACGACTGGGAGCTGTAGCTGTAGCTGCCGTCATATTCGGCGTCGACGGCGGTTGGGGAGTCGTCGATGTCGGCGCCGGCGAGGCGGAGCAGGCAGGAGGAGAGGCGGCGGAGGTGGGTGAGGAGGAAGAGGAGGTGGAGCAGCAGCCGTGGCACGCCGGAGTAGCCACCCACCGGGAACCCCATTATATTCTTTGTAGCTGCTTAATTGTGAAGAGAGAGATCAGGAGAGAGAGCTAACTATAAGTATAGTCAGTAGCTAATTAAGCTAGGGAATCAGCGGTTAGCTAGCTACTCCAGCTGAGAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTTGAGTGAGTGAGTGAGTGACATGCCACACACCAC
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| CDS seq | ATGGGGTTCCCGGTGGGTGGCTACTCCGGCGTGCCACGGCTGCTGCTCCACCTCCTCTTCCTCCTCACCCACCTCCGCCGCCTCTCCTCCTGCCTGCTCCGCCTCGCCGGCGCCGACATCGACGACTCCCCAACCGCCGTCGACGCCGAATATGACGGCAGCTACAGCTACAGCTCCCAGTCGTCCCAGCTGCTGGAGCTGGACGACCACTCCCCGGCGCTGCGCTTCGACGCGCTCTCATCATCCCTGCAGCCGCCGCTCCACGTCGCCACCTGCGCCGTCTGCCTCCGCGACTTCCACAAGTCCGCCCAGGTGCGCCGCGCCCACCGCTGCCGCCACGTCTTCCACCGCGCCTGCCTCGACGCCTGGGCCCACCACGGCCACCGCACCTGCCCTCTCTGCCGCTCGCCGCTGCTGCCCTCGTCGGCGCCGCCCGTTCTCCTGCCCCTTCCACTCCCTGCCTCCTAG
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| Protein seq | MGFPVGGYSGVPRLLLHLLFLLTHLRRLSSCLLRLAGADIDDSPTAVDAEYDGSYSYSSQSSQLLELDDHSPALRFDALSSSLQPPLHVATCAVCLRDFHKSAQVRRAHRCRHVFHRACLDAWAHHGHRTCPLCRSPLLPSSAPPVLLPLPLPAS |
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| Function | Brassinosteroid-responsive RING protein 1 [UniProtKB/Swiss-Prot:Q9XF92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_06g0000630 | OsARC_06g0000630.01 | Chr06 | 542166 | 543492 | - | NAM | ||
| CDS seq | ATGGGGTTCCCGGTGGGTGGCTACTCCGGCGTGCCACGGCTGCTGCTCCACCTCCTCTTCCTCCTCACCCACCTCCGCCGCCTCTCCTCCTGCCTGCTCCGCCTCGCCGGCGCCGACATCGACGACTCCCCAACCGCCGTCGACGCCGAATATGACGGCAGCTACAGCTACAGCTCCCAGTCGTCCCAGCTGCTGGAGCTGGACGACCACTCCCCGGCGCTGCGCTTCGACGCGCTCTCATCATCCCTGCAGCCGCCGCTCCACGTCGCCACCTGCGCCGTCTGCCTCCGCGACTTCCACAAGTCCGCCCAGGTGCGCCGCGCCCACCGCTGCCGCCACGTCTTCCACCGCGCCTGCCTCGACGCCTGGGCCCACCACGGCCACCGCACCTGCCCTCTCTGCCGCTCGCCGCTGCTGCCCTCGTCGGCGCCGCCCGTTCTCCTGCCCCTTCCACTCCCTGCCTCCTAG
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| Protein seq | MGFPVGGYSGVPRLLLHLLFLLTHLRRLSSCLLRLAGADIDDSPTAVDAEYDGSYSYSSQSSQLLELDDHSPALRFDALSSSLQPPLHVATCAVCLRDFHKSAQVRRAHRCRHVFHRACLDAWAHHGHRTCPLCRSPLLPSSAPPVLLPLPLPAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.044451 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0109100 | RBH | 0.807032 | 0.217609 | 7.668876 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g01960 | RBH | 0.000000 | 0.0 | 0.538927 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0109100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000650 | RBH | 0.163985 | 0.0 | 12.214246 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000660 | RBH | 0.149974 | 0.0 | 0.514670 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000630 | RBH | 0.265198 | 0.804481 | 4.262953 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000610 | RBH | 0.451810 | 12.997728 | 14.024860 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0007400 | RBH | 2.280272 | 0.831867 | 1.3721405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000580 | RBH | 0.0 | 0.442598 | 0.807472 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0007800 | RBH | 4.4260285 | 0.3690435 | 4.365888 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000610 | RBH | 0.103395 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000610 | RBH | 0.133823 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000620 | RBH | 6.183676 | 7.594827 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000610 | RBH | 0.166933 | 0.141882 | 1.166228 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000580 | RBH | 0.130316 | 5.661032 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000590 | RBH | 0.0 | 1.176792 | 5.897480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000600 | RBH | 0.0 | 4.586940 | 2.304717 |
