Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0029050 | OGI:05080190 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:30128964-30130651 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGAAACGAAGCGATGTATTCCAGTGATTTATTAACGAGGAGGGCAAAGCATCACATTTCAATCTTGTGTTATTGTTGTTGTTGAGTGGAGCACCTAAACTAATCTATAGCAATAACAAGAACAAACAGGAGGGGAGGAGGGAAACCTCAATACAGTGTTTGTAGTGCAGATTGGGACGGAAATCGAAATGATCAGAAGAAGGCGGTGCCGGCCAATCCGCGGTGGAGGAGGTTGTGCGCGATGTCGTCCCTCACCTTGTTGGCGGACTCCGACTGCACAAGCACGGTGTCGTCCTCCTCCTCGTCGGGGGGGAGGTCGCAGCGGAGGTCGGGGTCCATGTCCTCCCCCCTGGTCTCGCAGATGTTGTGGAGGACGCAGCAGGCGGCGAGCACCGCGGGGAGGTCCTGCAGCTTCACCTCCGTGCGCTTCTGCAGGCACGCCCACCGCCCCTTGAGGCGGACGAACGCCTCCGTGGCCACGCGCCGGACCTCGCCCACCTTCTCGTTGAAGGCGTGCTGCGTCCACGTCAGGTTGCGCTGCGCGTAGGGGACCAGCATCCACTCCGTCAGCGGGTAGCTCGCGCCGCCCACCACCCACGACATCGACCCAGCCGCCGCCGACGCCCGCTGGTGCAGCGCCGACTTGCGGAGCACCTGCTCGTCGCTCATGGACCCCGGCCACCCGATGCAGACGTCGGTGAAGGTGCCGTCGGGGCCGACGACGCCCTGGAGGGTGATGGAGTAGGAGGTCTTGTGGTTGCGCTCCGTGTGGCGGCGGTTCAAGTAGGCGGCGACGGAGACCTTGGGGGCGATGATGGGGATGTGCGTGGTGTACATGGCGCCCACCACCCCCGGGACACCCGAGGTGGCCTCGAAGCGCGTCTTGTAGGCGGTGGAGGTGGGGTGGTCGGGCCAGTGGAGGAAGCGCGGCATGAGGAGGTTGCGGATGGCGGCGCAGACCTCGAGGATGAGCTTGTGGCAGGTGGAGATGCCGAGGCCGAAGCGCTTGGAGACGACGCGGAGTGGCTCCCCCGTGGCGAGGCGCCAGACGCAGACGGCGACGCGCTGGCGGACGGGGATGGCGGCGCGGAGGGCGGTGTCCTCCTTGGCGACGGCGGCGGCGAGCGCGTCGCAGAGGAAGTGGAAGGTGGGGCGGGACATGCGGAAGGCGCGGCGGAAGTCGGCCTCCGGGTAGTCGGCGCTGCTGCACAGCTCCCACCACGCGCGCGACCGGTCCTTCACCCACAGCCGCCGCTGCTGGTGCGGCGACGACGACGACGAGGCGTCAGCGTCATCTGCCTCTTGGTGGTCGTTGAGCTGGAGGAGGGGGAGCTCGTGGCGCGGTGGAGGTGGCGGTGGCGGGGCGTCGTCGAGGGAGGTGAGTATGTTGTCGATGGGCGTGGTGTCGCCGGCGTCGTGGGCTTGGGGCTTGGATTCGCCGCGCTTGCGACGCCGGTTGGACATCACGTGTATCTCCTTCTCCTATGGAGGAGGAGAAATCGATCGATTTGGAGATTGAATCAAATCAAATCAAATCATCAAATGGGCAAGGCAATGGATTCATACAAGGAACGGAACGGGGGTAGGTGAAACAAGACTACTCTAGGAGTATTAGTACACTCCTAGAGTATTATTTATACAAGAAAAATACTGCACTACTGAAGGAGTATACTAGTAGCAGAATGGAAT
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| CDS seq | ATGTCCAACCGGCGTCGCAAGCGCGGCGAATCCAAGCCCCAAGCCCACGACGCCGGCGACACCACGCCCATCGACAACATACTCACCTCCCTCGACGACGCCCCGCCACCGCCACCTCCACCGCGCCACGAGCTCCCCCTCCTCCAGCTCAACGACCACCAAGAGGCAGATGACGCTGACGCCTCGTCGTCGTCGTCGCCGCACCAGCAGCGGCGGCTGTGGGTGAAGGACCGGTCGCGCGCGTGGTGGGAGCTGTGCAGCAGCGCCGACTACCCGGAGGCCGACTTCCGCCGCGCCTTCCGCATGTCCCGCCCCACCTTCCACTTCCTCTGCGACGCGCTCGCCGCCGCCGTCGCCAAGGAGGACACCGCCCTCCGCGCCGCCATCCCCGTCCGCCAGCGCGTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCACTCCGCGTCGTCTCCAAGCGCTTCGGCCTCGGCATCTCCACCTGCCACAAGCTCATCCTCGAGGTCTGCGCCGCCATCCGCAACCTCCTCATGCCGCGCTTCCTCCACTGGCCCGACCACCCCACCTCCACCGCCTACAAGACGCGCTTCGAGGCCACCTCGGGTGTCCCGGGGGTGGTGGGCGCCATGTACACCACGCACATCCCCATCATCGCCCCCAAGGTCTCCGTCGCCGCCTACTTGAACCGCCGCCACACGGAGCGCAACCACAAGACCTCCTACTCCATCACCCTCCAGGGCGTCGTCGGCCCCGACGGCACCTTCACCGACGTCTGCATCGGGTGGCCGGGGTCCATGAGCGACGAGCAGGTGCTCCGCAAGTCGGCGCTGCACCAGCGGGCGTCGGCGGCGGCTGGGTCGATGTCGTGGGTGGTGGGCGGCGCGAGCTACCCGCTGACGGAGTGGATGCTGGTCCCCTACGCGCAGCGCAACCTGACGTGGACGCAGCACGCCTTCAACGAGAAGGTGGGCGAGGTCCGGCGCGTGGCCACGGAGGCGTTCGTCCGCCTCAAGGGGCGGTGGGCGTGCCTGCAGAAGCGCACGGAGGTGAAGCTGCAGGACCTCCCCGCGGTGCTCGCCGCCTGCTGCGTCCTCCACAACATCTGCGAGACCAGGGGGGAGGACATGGACCCCGACCTCCGCTGCGACCTCCCCCCCGACGAGGAGGAGGACGACACCGTGCTTGTGCAGTCGGAGTCCGCCAACAAGGTGAGGGACGACATCGCGCACAACCTCCTCCACCGCGGATTGGCCGGCACCGCCTTCTTCTGA
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| Protein seq | MSNRRRKRGESKPQAHDAGDTTPIDNILTSLDDAPPPPPPPRHELPLLQLNDHQEADDADASSSSSPHQQRRLWVKDRSRAWWELCSSADYPEADFRRAFRMSRPTFHFLCDALAAAVAKEDTALRAAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLILEVCAAIRNLLMPRFLHWPDHPTSTAYKTRFEATSGVPGVVGAMYTTHIPIIAPKVSVAAYLNRRHTERNHKTSYSITLQGVVGPDGTFTDVCIGWPGSMSDEQVLRKSALHQRASAAAGSMSWVVGGASYPLTEWMLVPYAQRNLTWTQHAFNEKVGEVRRVATEAFVRLKGRWACLQKRTEVKLQDLPAVLAACCVLHNICETRGEDMDPDLRCDLPPDEEEDDTVLVQSESANKVRDDIAHNLLHRGLAGTAFF |
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| Function | Protein ALP1-like [UniProtKB/Swiss-Prot:Q9M2U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0029050 | OsARC_05g0029050.01 | Chr05 | 30128964 | 30130651 | - | NAM | ||
| CDS seq | ATGTCCAACCGGCGTCGCAAGCGCGGCGAATCCAAGCCCCAAGCCCACGACGCCGGCGACACCACGCCCATCGACAACATACTCACCTCCCTCGACGACGCCCCGCCACCGCCACCTCCACCGCGCCACGAGCTCCCCCTCCTCCAGCTCAACGACCACCAAGAGGCAGATGACGCTGACGCCTCGTCGTCGTCGTCGCCGCACCAGCAGCGGCGGCTGTGGGTGAAGGACCGGTCGCGCGCGTGGTGGGAGCTGTGCAGCAGCGCCGACTACCCGGAGGCCGACTTCCGCCGCGCCTTCCGCATGTCCCGCCCCACCTTCCACTTCCTCTGCGACGCGCTCGCCGCCGCCGTCGCCAAGGAGGACACCGCCCTCCGCGCCGCCATCCCCGTCCGCCAGCGCGTCGCCGTCTGCGTCTGGCGCCTCGCCACGGGGGAGCCACTCCGCGTCGTCTCCAAGCGCTTCGGCCTCGGCATCTCCACCTGCCACAAGCTCATCCTCGAGGTCTGCGCCGCCATCCGCAACCTCCTCATGCCGCGCTTCCTCCACTGGCCCGACCACCCCACCTCCACCGCCTACAAGACGCGCTTCGAGGCCACCTCGGGTGTCCCGGGGGTGGTGGGCGCCATGTACACCACGCACATCCCCATCATCGCCCCCAAGGTCTCCGTCGCCGCCTACTTGAACCGCCGCCACACGGAGCGCAACCACAAGACCTCCTACTCCATCACCCTCCAGGGCGTCGTCGGCCCCGACGGCACCTTCACCGACGTCTGCATCGGGTGGCCGGGGTCCATGAGCGACGAGCAGGTGCTCCGCAAGTCGGCGCTGCACCAGCGGGCGTCGGCGGCGGCTGGGTCGATGTCGTGGGTGGTGGGCGGCGCGAGCTACCCGCTGACGGAGTGGATGCTGGTCCCCTACGCGCAGCGCAACCTGACGTGGACGCAGCACGCCTTCAACGAGAAGGTGGGCGAGGTCCGGCGCGTGGCCACGGAGGCGTTCGTCCGCCTCAAGGGGCGGTGGGCGTGCCTGCAGAAGCGCACGGAGGTGAAGCTGCAGGACCTCCCCGCGGTGCTCGCCGCCTGCTGCGTCCTCCACAACATCTGCGAGACCAGGGGGGAGGACATGGACCCCGACCTCCGCTGCGACCTCCCCCCCGACGAGGAGGAGGACGACACCGTGCTTGTGCAGTCGGAGTCCGCCAACAAGGTGAGGGACGACATCGCGCACAACCTCCTCCACCGCGGATTGGCCGGCACCGCCTTCTTCTGA
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| Protein seq | MSNRRRKRGESKPQAHDAGDTTPIDNILTSLDDAPPPPPPPRHELPLLQLNDHQEADDADASSSSSPHQQRRLWVKDRSRAWWELCSSADYPEADFRRAFRMSRPTFHFLCDALAAAVAKEDTALRAAIPVRQRVAVCVWRLATGEPLRVVSKRFGLGISTCHKLILEVCAAIRNLLMPRFLHWPDHPTSTAYKTRFEATSGVPGVVGAMYTTHIPIIAPKVSVAAYLNRRHTERNHKTSYSITLQGVVGPDGTFTDVCIGWPGSMSDEQVLRKSALHQRASAAAGSMSWVVGGASYPLTEWMLVPYAQRNLTWTQHAFNEKVGEVRRVATEAFVRLKGRWACLQKRTEVKLQDLPAVLAACCVLHNICETRGEDMDPDLRCDLPPDEEEDDTVLVQSESANKVRDDIAHNLLHRGLAGTAFF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.042247 | 0.034945 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0593000 | RBH | 1.265197 | 1.603133 | 0.192706 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g51520 | RBH | 0.873560 | 0.989013 | 0.044853 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0593000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029190 | RBH | 0.111207 | 1.546336 | 1.867376 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028980 | RBH | 0.140373 | 1.878047 | 0.470008 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028990 | RBH | 0.433066 | 3.941297 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022290 | RBH | 0.093461 | 0.155228 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028910 | RBH | 0.616874 | 2.034823 | 3.995755 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0462900 | RBH | 1.241184 | 32.2350525 | 1.443084 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028610 | RBH | 0.086492 | 0.474144 | 0.177296 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0476300 | RBH | 1.5855005 | 24.67794 | 2.141657 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028790 | RBH | 0.098742 | 0.360386 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0001030 | RBH | 0.107621 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028940 | RBH | 0.0 | 7.525914 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028910 | RBH | 0.219696 | 0.995411 | 0.411578 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028970 | RBH | 0.0 | 2.468201 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028490 | RBH | 0.186870 | 1.002185 | 0.277989 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028990 | RBH | 0.337616 | 4.711618 | 2.803510 |
