Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0025500 | OGI:05073380 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:27721478-27722519 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGATTGCTCTGCGAAGCCGAGCCCTCACAGATAGAGAAGAAACCCTCGCTTCGCCGCTTCGCCGGCGCGGCTGGCCGGCCGCCACCGGCGATAACCTCGCCGCCGACGACTCCGCATCCGCTTCCGCCGCAGTCCGCCGCACCCGGTACGCTCCCCTTCCTCCCTCCCTCTCTCTTTTTTTTGGCGGCTCCTCGGACTGAGGCCGCACAAAACCCTAGCGATTCCGCGATTTTTCTTCGTAGTGCTGTTCTGAATCGGTTTGGTTTGGGGGTGATGCTGCTCCAGGTGGGGAATGGCTTCGGCGGTGGAGCGGAGGGAGCATTCCCGGAGGTCGGGGCGCTCGAGGTCGCGCTCGCCGGCGAGGGACCGGGGCTCGCCGCCGCGCAGGAGGGAGAGGTCGCCGGCTGCGAGGAGTCGGTCGCCTAGGAGGAGGTCTCCTGTTAAGTCTACTAGCTCACATAGGGAGAGGTCGCCTGTTCGGAGGAATGGCTCACCTAGGAGGTCTCCTGTTAGGAGTATTGGGAGGTCGCCACAAAGAGATAGGGTGAAGGAGCAGGTCAGGTCACCGAAACAGTCACGGTCACGGTCTCCGTCACCTGCCAGGAAACGGGAGTCTTGGTCGCCATCGCCGCAGAGCAAACGGCTGAGAAGGGCTCAGAGTGAGCGGGAAGGTGCAGATGCTACTGAGGGTGACCGCCGGAAGACCACCAGGGAGCGTGATGAGGGAAAGGATGTGTCAAGGGATAGAAAGGCTGAGAGGGAGGAGGGCTCTTTTAAGGACAGGAAACTGGATCACGATGATGATAGGGATCACTCAAGAGATAGAAGGTCTGATCGGTCGGGTGCTTCAAGGGAGACATGGTCAAGCCGAGATGATGAAGGGCGTGATTCAAGGGGTAGAAGGTCTGATGGGGATGATCGAAAAGGCATTTGCAGGGAGCAAAGGGCGGATCATGATGATAGAAAGGATTCTGCAAGAGAGAGAAGGGCAGACCGGGATGAGAGCAATGGTGAATCAGGGAGATCATCTAGGCGTGGGTGA
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| CDS seq | ATGGCTTCGGCGGTGGAGCGGAGGGAGCATTCCCGGAGGTCGGGGCGCTCGAGGTCGCGCTCGCCGGCGAGGGACCGGGGCTCGCCGCCGCGCAGGAGGGAGAGGTCGCCGGCTGCGAGGAGTCGGTCGCCTAGGAGGAGGTCTCCTGTTAAGTCTACTAGCTCACATAGGGAGAGGTCGCCTGTTCGGAGGAATGGCTCACCTAGGAGGTCTCCTGTTAGGAGTATTGGGAGGTCGCCACAAAGAGATAGGGTGAAGGAGCAGGTCAGGTCACCGAAACAGTCACGGTCACGGTCTCCGTCACCTGCCAGGAAACGGGAGTCTTGGTCGCCATCGCCGCAGAGCAAACGGCTGAGAAGGGCTCAGAGTGAGCGGGAAGGTGCAGATGCTACTGAGGGTGACCGCCGGAAGACCACCAGGGAGCGTGATGAGGGAAAGGATGTGTCAAGGGATAGAAAGGCTGAGAGGGAGGAGGGCTCTTTTAAGGACAGGAAACTGGATCACGATGATGATAGGGATCACTCAAGAGATAGAAGGTCTGATCGGTCGGGTGCTTCAAGGGAGACATGGTCAAGCCGAGATGATGAAGGGCGTGATTCAAGGGGTAGAAGGTCTGATGGGGATGATCGAAAAGGCATTTGCAGGGAGCAAAGGGCGGATCATGATGATAGAAAGGATTCTGCAAGAGAGAGAAGGGCAGACCGGGATGAGAGCAATGGTGAATCAGGGAGATCATCTAGGCGTGGGTGA
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| Protein seq | MASAVERREHSRRSGRSRSRSPARDRGSPPRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQSRSRSPSPARKRESWSPSPQSKRLRRAQSEREGADATEGDRRKTTRERDEGKDVSRDRKAEREEGSFKDRKLDHDDDRDHSRDRRSDRSGASRETWSSRDDEGRDSRGRRSDGDDRKGICREQRADHDDRKDSARERRADRDESNGESGRSSRRG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0025500 | OsARC_05g0025500.01 | Chr05 | 27721478 | 27722519 | + | NAM | ||
| CDS seq | ATGGCTTCGGCGGTGGAGCGGAGGGAGCATTCCCGGAGGTCGGGGCGCTCGAGGTCGCGCTCGCCGGCGAGGGACCGGGGCTCGCCGCCGCGCAGGAGGGAGAGGTCGCCGGCTGCGAGGAGTCGGTCGCCTAGGAGGAGGTCTCCTGTTAAGTCTACTAGCTCACATAGGGAGAGGTCGCCTGTTCGGAGGAATGGCTCACCTAGGAGGTCTCCTGTTAGGAGTATTGGGAGGTCGCCACAAAGAGATAGGGTGAAGGAGCAGGTCAGGTCACCGAAACAGTCACGGTCACGGTCTCCGTCACCTGCCAGGAAACGGGAGTCTTGGTCGCCATCGCCGCAGAGCAAACGGCTGAGAAGGGCTCAGAGTGAGCGGGAAGGTGCAGATGCTACTGAGGGTGACCGCCGGAAGACCACCAGGGAGCGTGATGAGGGAAAGGATGTGTCAAGGGATAGAAAGGCTGAGAGGGAGGAGGGCTCTTTTAAGGACAGGAAACTGGATCACGATGATGATAGGGATCACTCAAGAGATAGAAGGTCTGATCGGTCGGGTGCTTCAAGGGAGACATGGTCAAGCCGAGATGATGAAGGGCGTGATTCAAGGGGTAGAAGGTCTGATGGGGATGATCGAAAAGGCATTTGCAGGGAGCAAAGGGCGGATCATGATGATAGAAAGGATTCTGCAAGAGAGAGAAGGGCAGACCGGGATGAGAGCAATGGTGAATCAGGGAGATCATCTAGGCGTGGGTGA
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| Protein seq | MASAVERREHSRRSGRSRSRSPARDRGSPPRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQSRSRSPSPARKRESWSPSPQSKRLRRAQSEREGADATEGDRRKTTRERDEGKDVSRDRKAEREEGSFKDRKLDHDDDRDHSRDRRSDRSGASRETWSSRDDEGRDSRGRRSDGDDRKGICREQRADHDDRKDSARERRADRDESNGESGRSSRRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.236923 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0545600 | SBH | 1.735820 | 2.239703 | 2.580318 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46770 | RBH | 1.390130 | 0.893893 | 0.728522 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0545600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025700 | SBH | 0.750340 | 0.446815 | 8.004750 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025450 | SBH | 0.452737 | 2.853405 | 3.007462 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025460 | RBH | 1.990403 | 6.578868 | 11.054852 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025510 | RBH | 0.181596 | 0.353284 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025480 | SBH | 6.476741 | 12.723401 | 15.746329 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0421600 | RBH | 6.861787 | 10.480333 | 21.173208 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025140 | SBH | 0.617918 | 0.971511 | 1.382995 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0433300 | SBH | 6.437278 | 10.4418735 | 17.7434925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025300 | SBH | 0.219105 | 0.092508 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025200 | RBH | 0.779008 | 2.766220 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025400 | RBH | 5.151616 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025380 | RBH | 0.995732 | 0.764218 | 2.538620 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025440 | SBH | 0.919600 | 2.258276 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024880 | RBH | 0.347636 | 0.986063 | 0.473377 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025300 | RBH | 2.701349 | 12.018112 | 6.992716 |
