Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0009400 | OGI:05027140 | 12/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:10232737-10234139 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGCGTGGAAGCCTGCCAATGGTTTGAAATCCAATCCACAACCAGCCCAAACCAAAGCAGTAAGCTACACAAGTCCAAACCACTCTAATTCATTTGTCTTCTCTTAGAATCCAAACCAATCCAACCCATATCATATTTCAACCCAAATCAACCCAACCCATTTCATCTATATGGATTCAGTTCACTTTTCCAGTCCATTTCACCCCATTCCAAATCGACACCAACCACATGTCGGCGACGAGGTGGGCGAGGAGCATCGGCGGCGAGCCGAGGAAGTCGCAGCGCGACTCCGAGCAGGAGCAGGGCGCGTGCGGGCAGGCGCGCTGGTGGCCGGCGACGTCGTAATAGGCGACGTAGCTCCAGCAGCCGAACAGGTCGTTGGGGCACAGGATCTTGGCGGCGCCGCCGCACGCGTGGCACTGCTTGCCGGGACGTCGCCATGGCAGCTGCTGCACGCCAAGTGCCCCGCCGCGGACTGCACGCCAAGAAATTGCCACTAGCCGAGCCCTCACGAATCGAATGAAAGAACAACAACAAGAAGAAGAATGTCAGATGGATTGGATGAACAGCTAGGAAGGAGGCAGATAGGGCAACGGAGCACGGCCAAGTCGATCCGCTTTTCTTCTTCTTCTCCGGCTCCGGCTGCAGCTCCCTCGCCGCGCGCCGCTTCCACCGCCTTTTCTCGCTTCACTTGGCCGTTGGGCGACACCACCCACGCCGCCTTCTTGGCGCCGCTCTGCTCGTCGTGCTGCCTGTACGCCGCACTGTTCGCGCTCAACTTGGCCACGTGGTTCGGCGACGGCGTGGACGGCGAGCTCGTCGGCGCCATGCGCGCCGTGCAGCAGGAGTTCCCTCCGCTTCCTCCCCCGCGCCCGCGTCTTCTCCACCTTCCAGAAGGCGGCGGGCGGCGGCGGCGGAAGCTCTCCGACGGCGAACCTAGTGCGGCGGCCGGACATCCAAACGCGGCTGCGCGGCGAGGTCGAGGCGGCCGAGGGCGGTGGTGATGGAGTGCCTCTGTGTCTGAGACGACATCATCTGCTATTTGGGGATGAATCCAATTGAAATCCATGGACTCCATCCATTTTAGACCCAAAAATTATGACTAAAAACCAATCCAATCCAACCCAACCATCCCTCATCCAAGCTGCTCCAATCCATTAGTTATCTCAACCCGTTTACACCCATACCAAGTGAATCCAAATTGAAAACCAATCCATTAGACCCATTCCAATCCAACCCATTGGCAGGCTACATATACGTACGCGTGCATTCTTAATTACCTTCGACTGGATCAGTTTTTGGTGCTTGTTGATCCTGAGCAGCTGCAACCCGCCATGAGCACAAAATTAGCACCAGCCACGCCAGATGGTGGCGAATGACACCTCTGATGCTGCAAGAACGCAT
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| CDS seq | ATGCGTTCTTGCAGCATCAGAGGTGTCATTCGCCACCATCTGGCGTGGCTGGTGCTAATTTTGTGCTCATGGCGGGTTGCAGCTGCTCAGGATCAACAAGCACCAAAAACTGATCCAGTCGAAGATGATGTCGTCTCAGACACAGAGGCACTCCATCACCACCGCCCTCGGCCGCCTCGACCTCGCCGCGCAGCCGCGTTTGGATGTCCGGCCGCCGCACTAGGTTCGCCGTCGGAGAGCTTCCGCCGCCGCCGCCCGCCGCCTTCTGGAAGGTGGAGAAGACGCGGGCGCGGGGGAGGAAGCGGAGGGAACTCCTGCTGCACGGCGCGCATGGCGCCGACGAGCTCGCCGTCCACGCCGTCGCCGAACCACGTGGCCAAGTTGAGCGCGAACAGTGCGGCGTACAGGCAGCACGACGAGCAGAGCGGCGCCAAGAAGGCGGCGTGGGTGGTGTCGCCCAACGGCCAAGTGAAGCGAGAAAAGGCGGTGGAAGCGGCGCGCGGCGAGGGAGCTGCAGCCGGAGCCGGAGAAGAAGAAGAAAAGCGGATCGACTTGGCCGTGCTCCGTTGCCCTATCTGCCTCCTTCCTAGCTGTTCATCCAATCCATCTGACATTCTTCTTCTTGTTGTTGTTCTTTCATTCGATTCGTGA
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| Protein seq | MRSCSIRGVIRHHLAWLVLILCSWRVAAAQDQQAPKTDPVEDDVVSDTEALHHHRPRPPRPRRAAAFGCPAAALGSPSESFRRRRPPPSGRWRRRGRGGGSGGNSCCTARMAPTSSPSTPSPNHVAKLSANSAAYRQHDEQSGAKKAAWVVSPNGQVKREKAVEAARGEGAAAGAGEEEEKRIDLAVLRCPICLLPSCSSNPSDILLLVVVLSFDS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0009400 | OsARC_05g0009400.01 | Chr05 | 10232737 | 10234139 | - | NAM | ||
| CDS seq | ATGCGTTCTTGCAGCATCAGAGGTGTCATTCGCCACCATCTGGCGTGGCTGGTGCTAATTTTGTGCTCATGGCGGGTTGCAGCTGCTCAGGATCAACAAGCACCAAAAACTGATCCAGTCGAAGATGATGTCGTCTCAGACACAGAGGCACTCCATCACCACCGCCCTCGGCCGCCTCGACCTCGCCGCGCAGCCGCGTTTGGATGTCCGGCCGCCGCACTAGGTTCGCCGTCGGAGAGCTTCCGCCGCCGCCGCCCGCCGCCTTCTGGAAGGTGGAGAAGACGCGGGCGCGGGGGAGGAAGCGGAGGGAACTCCTGCTGCACGGCGCGCATGGCGCCGACGAGCTCGCCGTCCACGCCGTCGCCGAACCACGTGGCCAAGTTGAGCGCGAACAGTGCGGCGTACAGGCAGCACGACGAGCAGAGCGGCGCCAAGAAGGCGGCGTGGGTGGTGTCGCCCAACGGCCAAGTGAAGCGAGAAAAGGCGGTGGAAGCGGCGCGCGGCGAGGGAGCTGCAGCCGGAGCCGGAGAAGAAGAAGAAAAGCGGATCGACTTGGCCGTGCTCCGTTGCCCTATCTGCCTCCTTCCTAGCTGTTCATCCAATCCATCTGACATTCTTCTTCTTGTTGTTGTTCTTTCATTCGATTCGTGA
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| Protein seq | MRSCSIRGVIRHHLAWLVLILCSWRVAAAQDQQAPKTDPVEDDVVSDTEALHHHRPRPPRPRRAAAFGCPAAALGSPSESFRRRRPPPSGRWRRRGRGGGSGGNSCCTARMAPTSSPSTPSPNHVAKLSANSAAYRQHDEQSGAKKAAWVVSPNGQVKREKAVEAARGEGAAAGAGEEEEKRIDLAVLRCPICLLPSCSSNPSDILLLVVVLSFDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0256100 | SBH | 2.364908 | 1.882851 | 3.376952 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g16670 | SBH | 1.501637 | 1.219637 | 0.663256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0256100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0009370 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0009410 | RBH | 0.0 | 1.075702 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0009320 | RBH | 0.000000 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0009440 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0009480 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0156400 | SBH | 0 | 0.0454145 | 0.532185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0009340 | RBH | 0.056429 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0153700 | RBH | 0.2230125 | 87.1749115 | 0.025962 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0009310 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0009260 | RBH | 0.000000 | 27.533041 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0009360 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0009400 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0009380 | RBH | 0.0 | 2.334093 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009180 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009500 | SBH | 0.0 | 3.389754 | 0.0 |
