Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0006180 | OGI:05015760 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:5722183-5724193 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCTAGATAGATTTACCGCTCTTACACGTACATGCTATTACAAATCTCATCAATCTCACAAGGAAAAGTACAGATAGACGCGCGTCGAAAATTATTGTAACTTAGAAGCATTTCAAGACAAAACAAAGATGAAACGCACGTGACACGGAGTCTGGGCCTCATTGGACTTGTTACTCAGCAACCTAGCCGATGTAGTACATGGGGTCCGGCAGCTTGAAGGTGCGGGCGCCCTCCGGTGTACCGAGGATGTCACTCCATTGGTCACCAATGTTACCGAGGATGGTGAAACCGGCATCCTCCAGCTTTTGCCGCTCGCCGGACTTGTATGCAACGGCGGACCCCTGGAGCTCGCCGGCGGCGTGCACTGCTGGCTTGAGCAACAACTCCATCCACCCGGAGTATCCCTGCCGGCGGAGGTTTGTGACGGTGATGTTCCTTTGGTCCTCGGTGCGGCCCGTCAGGAACACCGGCTTGACGCCGAGCTGGAGCAGCCGCCGGTACAACCGCCTCGTCTCCGGCAGCGCCGGCGCGCTCCCTTCCGCCACGTATTCGCGGAAGCTCGTATCATTGTACAGTGTAGCTCTGCCGGGTGTTAGTAAAAAATCATTAATGAAACTCTTCATTAATTTAGAACTTACAGGAATTCAAAATAAAGTTCCAACTTTTGTGCATATTTGAAAAAATTAACAATTAGTGAAAGATCTAACTAACGCCCTCATCATGCAGTGGTCCATAAATCCACCCATAATTTGTATAACGATTAAATTTTGGATCTTTTTTTTGAAAGAACGAATTTTGGATCTGACTTATATGACTGCTGGACAATATAAGCCCGACAAAATGTACTGTCTGCCAGCCTGTGCATGTTTGCATCACTCATTACCTGATCTGCTGGTCCAATCTGTTTTTTTAGGGTTCTGACTTCCTACAGGCTAGTAATAAATTATTGATTGAAGAATCTAATAAAGGTTTCAGTGGTTTGCCTAAAAATAGCCACATGGACAAGTGCATAGTGTTCTTTTTATCCTCTTAATCAATATAATGCTTAAAGTTATCTAGTTCTTTGCGAGGTCTTGGAATGTCCGGTGGAATCTTGCTAAGCATATATAGATGCGCATCTCCTTGCTATTTTTTACTATTTTGAGAATGTTTTACTGTGTTATATTCATTAATTGGATGATATATACTTTTCATCTTTGACTTCACATTTTGTAATACCCCAGTATTTCCTATATTAATTTGTGAACTAGGCAGGCCGGTCTCAATTTAATAATACGTTCACATACTGTATATTTGTATGCACATTAAATAGTTCATCATAATTTTGACACTTAATTAATTATGTCACATCAGCTAGATTTTTAGATATTTTTTTCATATATAGTAGTATTATCTTGCCAGCAAGTTGCCAGTAGATAAATGTATAACCAAGTCAGCGCGCGGTGTAAGTCCCAACTGAAATGAGGCGTATATACCTGCAGCAATACACGTATAATACAAGATATATATGTATAGGTAATACTGCAAGGAAAGTGGTGTGTACGTGTACGTGTACGTATAGTATACGTACCCGAATCCGTGCTTGGCGTAGTAGGGGAGGTTGGAGAGGGAGGTCTCGTCGATGTCGAACACCCAGATCTCCTTGCCGTTGCCGGAGAGCTGGAGGCTCTCGGCGTAGGCGATGGCCTCGTCGATGACGACGGCGGAGTCACGGCGGTAGTGGCCACCCGAGCATGTAGTGGCCGACGTAGCCCTCGCACCTGGCCGGCACCGTCTTCCACCCGATCACGTTGTGTGCCTCCACGCCTAGCCTCCAGCTGTCGCACGCCACGCCGGCGCGCGCCGCCAGCTGCCCGCCGGAGCCCAGCAGCGGCCGCAGCGCGTGGATGATCGGCGCCACCACGGCCTCGCCGCCGTTCAGCATCTCCGTCGGCAACCGGATGTTCATCTCCCACGCGCTGGCTGCCGCCGTGAGGAAGAGGAGGAGGAGCAGCCTCGCCGCCGTCGCCAT
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| CDS seq | ATGGCGACGGCGGCGAGGCTGCTCCTCCTCCTCTTCCTCACGGCGGCAGCCAGCGCGTGGGAGATGAACATCCGGTTGCCGACGGAGATGCTGAACGGCGGCGAGGCCGTGGTGGCGCCGATCATCCACGCGCTGCGGCCGCTGCTGGGCTCCGGCGGGCAGCTGGCGGCGCGCGCCGGCGTGGCGTGCGACAGCTGGAGGCTAGGCGTGGAGGCACACAACGTGATCGGGTGGAAGACGGTGCCGGCCAGGGCTACGTCGGCCACTACATGCTCGGGTGGCCACTACCGCCGTGACTCCGCCGTCGTCATCGACGAGGCCATCGCCTACGCCGAGAGCCTCCAGCTCTCCGGCAACGGCAAGGAGATCTGGGTGTTCGACATCGACGAGACCTCCCTCTCCAACCTCCCCTACTACGCCAAGCACGGATTCGGAGCTACACTGTACAATGATACGAGCTTCCGCGAATACGTGGCGGAAGGGAGCGCGCCGGCGCTGCCGGAGACGAGGCGGTTGTACCGGCGGCTGCTCCAGCTCGGCGTCAAGCCGGTGTTCCTGACGGGCCGCACCGAGGACCAAAGGAACATCACCGTCACAAACCTCCGCCGGCAGGGATACTCCGGGTGGATGGAGTTGTTGCTCAAGCCAGCAGTGCACGCCGCCGGCGAGCTCCAGGGGTCCGCCGTTGCATACAAGTCCGGCGAGCGGCAAAAGCTGGAGGATGCCGGTTTCACCATCCTCGGTAACATTGGTGACCAATGGAGTGACATCCTCGGTACACCGGAGGGCGCCCGCACCTTCAAGCTGCCGGACCCCATGTACTACATCGGCTAG
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| Protein seq | MATAARLLLLLFLTAAASAWEMNIRLPTEMLNGGEAVVAPIIHALRPLLGSGGQLAARAGVACDSWRLGVEAHNVIGWKTVPARATSATTCSGGHYRRDSAVVIDEAIAYAESLQLSGNGKEIWVFDIDETSLSNLPYYAKHGFGATLYNDTSFREYVAEGSAPALPETRRLYRRLLQLGVKPVFLTGRTEDQRNITVTNLRRQGYSGWMELLLKPAVHAAGELQGSAVAYKSGERQKLEDAGFTILGNIGDQWSDILGTPEGARTFKLPDPMYYIG |
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| Function | Stem 28 kDa glycoprotein [UniProtKB/Swiss-Prot:P15490] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0006180 | OsARC_05g0006180.01 | Chr05 | 5722183 | 5724193 | - | NAM | ||
| CDS seq | ATGGCGACGGCGGCGAGGCTGCTCCTCCTCCTCTTCCTCACGGCGGCAGCCAGCGCGTGGGAGATGAACATCCGGTTGCCGACGGAGATGCTGAACGGCGGCGAGGCCGTGGTGGCGCCGATCATCCACGCGCTGCGGCCGCTGCTGGGCTCCGGCGGGCAGCTGGCGGCGCGCGCCGGCGTGGCGTGCGACAGCTGGAGGCTAGGCGTGGAGGCACACAACGTGATCGGGTGGAAGACGGTGCCGGCCAGGGCTACGTCGGCCACTACATGCTCGGGTGGCCACTACCGCCGTGACTCCGCCGTCGTCATCGACGAGGCCATCGCCTACGCCGAGAGCCTCCAGCTCTCCGGCAACGGCAAGGAGATCTGGGTGTTCGACATCGACGAGACCTCCCTCTCCAACCTCCCCTACTACGCCAAGCACGGATTCGGAGCTACACTGTACAATGATACGAGCTTCCGCGAATACGTGGCGGAAGGGAGCGCGCCGGCGCTGCCGGAGACGAGGCGGTTGTACCGGCGGCTGCTCCAGCTCGGCGTCAAGCCGGTGTTCCTGACGGGCCGCACCGAGGACCAAAGGAACATCACCGTCACAAACCTCCGCCGGCAGGGATACTCCGGGTGGATGGAGTTGTTGCTCAAGCCAGCAGTGCACGCCGCCGGCGAGCTCCAGGGGTCCGCCGTTGCATACAAGTCCGGCGAGCGGCAAAAGCTGGAGGATGCCGGTTTCACCATCCTCGGTAACATTGGTGACCAATGGAGTGACATCCTCGGTACACCGGAGGGCGCCCGCACCTTCAAGCTGCCGGACCCCATGTACTACATCGGCTAG
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| Protein seq | MATAARLLLLLFLTAAASAWEMNIRLPTEMLNGGEAVVAPIIHALRPLLGSGGQLAARAGVACDSWRLGVEAHNVIGWKTVPARATSATTCSGGHYRRDSAVVIDEAIAYAESLQLSGNGKEIWVFDIDETSLSNLPYYAKHGFGATLYNDTSFREYVAEGSAPALPETRRLYRRLLQLGVKPVFLTGRTEDQRNITVTNLRRQGYSGWMELLLKPAVHAAGELQGSAVAYKSGERQKLEDAGFTILGNIGDQWSDILGTPEGARTFKLPDPMYYIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.231100 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0192100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g10370 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0192100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006200 | RBH | 0.0 | 135.051437 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006240 | RBH | 0.0 | 10.290258 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006130 | RBH | 0.0 | 313.028442 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006150 | RBH | 0.069518 | 0.025948 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006250 | RBH | 0.0 | 44.839584 | 2.111592 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0086100 | RBH | 4.0788985 | 5.720741 | 0.024442 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006070 | RBH | 0.0 | 1.896775 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0085200 | RBH | 8.2920865 | 1.422286 | 0.1061825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006160 | RBH | 0.0 | 0.087157 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006100 | RBH | 0.0 | 13.078955 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006180 | RBH | 0.0 | 36.450119 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006250 | RBH | 0.000000 | 14.566483 | 0.754785 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006220 | RBH | 0.0 | 113.100616 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006020 | RBH | 0.0 | 17.165066 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006250 | RBH | 0.0 | 54.570431 | 0.0 |
