Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0005300 | OGI:05013070 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:4704820-4706791 | ||||||||
| Gene Symbol | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | ||||||||||
| DNA seq | AGCATTGTTCAGGTTGCCTCCACTTATTCCTTGTCCTGGTTCTACAGTGAAACTCTCATCAGGTCAGTATTCTCCTTTCCAATTTATGAAAGCTGTTAAGAAAAAAGGTTTATTCAAGGGAAAAACTACCTATACTTGCTTATAATTAAAATTTGCCTTCCTTATTTTAGCACAACAAATCATATCCCTAATATTTATTTATTTTTTCTGGCATGGATAATTGCAATCATACCATAGTTCTAACTCTCCTTGTCCTCTTCCTTCGCTACTCGAATCATGCTCAACGCCGATATATTTGTCCCGAACAACTTATCCCTTACAGCCATGTACTCCGGCCATGTCACGGCCTGATACACGGCCTTGCTCTCCGGCGACCCCGTCGCCACGAGAGGTGTCACCTTCATGTCGGCCGGCGGACCGAGGAAGTAGGGCATGGAGATCCGGTCTCTCTCCCGGTTCACCACAGCACGGTGGAACACGCTGTGGAAGTGCCCGTTGGTGAGCACATGGAAGAGATCGCCGACGACGACGATGAGCGCCCCCGGCGTCCCTGGCACCGTCACCCACCGGTCTGGCCGGCGGCGGAGCAGCTGCAGCCCTGGCACGGGGCTCTGCAGGATGAAGGTGAAGAAGCCCGAGTCCGTGTGCGCCGCCAGCCCGACCACCTGATCTGGATCTGGACACCTAGGGAACCTGCGTGTGGCCACGTCAGAGTGACGCGTGTCAGCTCCAGAGCACGATTGCATGTGAAGATATATGAGTATGGAAAAGTATTTTTCTACTTGTGTACTCTCTCCGTCCCAAAAAAAAGACAACTTCTAGATATGTACTTGGACACAGCTTGTCCAGGTTCATCTCCAGAAGTTGGTTTTTATGGGACGGGGGGTGTATGCATGTAGTTTAAATAGTTATAAAAAATCATAAAATTTGATAAGATATATTATGATAATATAAAACACTATATACAATATGCGAGTTTAAATTACAAAAGAAATAACAAATTTTATATGTACTACTATTCATTGCCTGATTTTATTATTTTTATTTTCTTTAATTGTAGATTAAATGTAGTCTTACATGTTTGTTTATATTTTCTCAAAGTCGCATGTAAATAATGGGTGGCATGATACCACATCCATATGAGTTTACATACATGTTGAGGTGAATCGTCGACGTCAACGTCTCGCGGATCTTCCGCTCGGTCTCGCCGCCGGGGGCATCGTCGCCGGCGAGTCCGAGCGCCTTGAAGAACATGGCGAGGAGCCTCTCGCCCAGAGCTCTCATCGACGCGTCGTACTCCTCCATGGCGGAGCTGGGCCGCGGACGAACACGCTATAGGTTAGTTGCATGCAATGGCGGATCGATCGATCGGCGGTGAACGCGTACCAGAAACGGTGGTAGTCGTCGCCGGCGTCGGGCCAGACGCGGCGGAACTCGTCGCGGATGGCCGGGGGAGGGAAGGTGTAGCCCTCCGCCCACATCTGCTTCGGGTACCGGAGGAGGTACGGCGGCACGCCGTAGCCGGTGTTCCCGCCGCCGGGCCGCCGCGCGCCGCGCGCCTTGTCGTCCGCCGGCAGCGCGAACAGCCGCGCCGCCTGCGCCTCGACGCGCGCCAGGGCCTCCGCGGTCACGCCGTGCCCGACGAGCAGGAACCCGCCCCACTCCTCCGCCGCGCGCGCCACCGCCGCCACCGCGGCGTCGTCGCCGCCGCTCATGTCCACCACCGGCACCGCGTCGCCGCCGTCCGCGTCCGCCGCCGCCACCGGCGCGGTGTCCTTCTCGTGCATTCCCTTCCACACGTGCGACTCCGGCACGCGCTCTGCCCCGCGGAAGTTGAAGTAGGCGGCGGCGACGCCATTGTCGGCGGCGGCGGCCAGCGGCGAGGTCGGCGAGGTCGGCGAGGTCGACGACGATGTCATGATCTGCATGAACTCGTTGGCTAACGCACACAAGCCTGTGACTAGTGATGTAC
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| CDS seq | ATGCAGATCATGACATCGTCGTCGACCTCGCCGACCTCGCCGACCTCGCCGCTGGCCGCCGCCGCCGACAATGGCGTCGCCGCCGCCTACTTCAACTTCCGCGGGGCAGAGCGCGTGCCGGAGTCGCACGTGTGGAAGGGAATGCACGAGAAGGACACCGCGCCGGTGGCGGCGGCGGACGCGGACGGCGGCGACGCGGTGCCGGTGGTGGACATGAGCGGCGGCGACGACGCCGCGGTGGCGGCGGTGGCGCGCGCGGCGGAGGAGTGGGGCGGGTTCCTGCTCGTCGGGCACGGCGTGACCGCGGAGGCCCTGGCGCGCGTCGAGGCGCAGGCGGCGCGGCTGTTCGCGCTGCCGGCGGACGACAAGGCGCGCGGCGCGCGGCGGCCCGGCGGCGGGAACACCGGCTACGGCGTGCCGCCGTACCTCCTCCGGTACCCGAAGCAGATGTGGGCGGAGGGCTACACCTTCCCTCCCCCGGCCATCCGCGACGAGTTCCGCCGCGTCTGGCCCGACGCCGGCGACGACTACCACCGTTTCTGGTACGCGTTCACCGCCGATCGATCGATCCGCCATTGCATGCAACTAACCTATAGCGTCTCCGCCATGGAGGAGTACGACGCGTCGATGAGAGCTCTGGGCGAGAGGCTCCTCGCCATGTTCCCTAGGTGTCCAGATCCAGATCAGGTGGTCGGGCTGGCGGCGCACACGGACTCGGGCTTCTTCACCTTCATCCTGCAGAGCCCCGTGCCAGGGCTGCAGCTGCTCCGCCGCCGGCCAGACCGGTGGGTGACGGTGCCAGGGACGCCGGGGGCGCTCATCGTCGTCGTCGGCGATCTCTTCCATGTGCTCACCAACGGGCACTTCCACAGCGTGTTCCACCGTGCTGTGGTGAACCGGGAGAGAGACCGGATCTCCATGCCCTACTTCCTCGGTCCGCCGGCCGACATGAAGGTGACACCTCTCGTGGCGACGGGGTCGCCGGAGAGCAAGGCCGTGTATCAGGCCGTGACATGGCCGGAGTACATGGCTGTAAGGGATAAGTTGTTCGGGACAAATATATCGGCGTTGAGCATGATTCGAGTAGCGAAGGAAGAGGACAAGGAGAGTTAG
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| Protein seq | MQIMTSSSTSPTSPTSPLAAAADNGVAAAYFNFRGAERVPESHVWKGMHEKDTAPVAAADADGGDAVPVVDMSGGDDAAVAAVARAAEEWGGFLLVGHGVTAEALARVEAQAARLFALPADDKARGARRPGGGNTGYGVPPYLLRYPKQMWAEGYTFPPPAIRDEFRRVWPDAGDDYHRFWYAFTADRSIRHCMQLTYSVSAMEEYDASMRALGERLLAMFPRCPDPDQVVGLAAHTDSGFFTFILQSPVPGLQLLRRRPDRWVTVPGTPGALIVVVGDLFHVLTNGHFHSVFHRAVVNRERDRISMPYFLGPPADMKVTPLVATGSPESKAVYQAVTWPEYMAVRDKLFGTNISALSMIRVAKEEDKES |
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| Function | Gibberellin 3-beta-dioxygenase 1 [UniProtKB/Swiss-Prot:Q6AT12] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0005300 | OsARC_05g0005300.01 | Chr05 | 4704820 | 4706791 | - | NAM | ||
| CDS seq | ATGCAGATCATGACATCGTCGTCGACCTCGCCGACCTCGCCGACCTCGCCGCTGGCCGCCGCCGCCGACAATGGCGTCGCCGCCGCCTACTTCAACTTCCGCGGGGCAGAGCGCGTGCCGGAGTCGCACGTGTGGAAGGGAATGCACGAGAAGGACACCGCGCCGGTGGCGGCGGCGGACGCGGACGGCGGCGACGCGGTGCCGGTGGTGGACATGAGCGGCGGCGACGACGCCGCGGTGGCGGCGGTGGCGCGCGCGGCGGAGGAGTGGGGCGGGTTCCTGCTCGTCGGGCACGGCGTGACCGCGGAGGCCCTGGCGCGCGTCGAGGCGCAGGCGGCGCGGCTGTTCGCGCTGCCGGCGGACGACAAGGCGCGCGGCGCGCGGCGGCCCGGCGGCGGGAACACCGGCTACGGCGTGCCGCCGTACCTCCTCCGGTACCCGAAGCAGATGTGGGCGGAGGGCTACACCTTCCCTCCCCCGGCCATCCGCGACGAGTTCCGCCGCGTCTGGCCCGACGCCGGCGACGACTACCACCGTTTCTGGTACGCGTTCACCGCCGATCGATCGATCCGCCATTGCATGCAACTAACCTATAGCGTCTCCGCCATGGAGGAGTACGACGCGTCGATGAGAGCTCTGGGCGAGAGGCTCCTCGCCATGTTCCCTAGGTGTCCAGATCCAGATCAGGTGGTCGGGCTGGCGGCGCACACGGACTCGGGCTTCTTCACCTTCATCCTGCAGAGCCCCGTGCCAGGGCTGCAGCTGCTCCGCCGCCGGCCAGACCGGTGGGTGACGGTGCCAGGGACGCCGGGGGCGCTCATCGTCGTCGTCGGCGATCTCTTCCATGTGCTCACCAACGGGCACTTCCACAGCGTGTTCCACCGTGCTGTGGTGAACCGGGAGAGAGACCGGATCTCCATGCCCTACTTCCTCGGTCCGCCGGCCGACATGAAGGTGACACCTCTCGTGGCGACGGGGTCGCCGGAGAGCAAGGCCGTGTATCAGGCCGTGACATGGCCGGAGTACATGGCTGTAAGGGATAAGTTGTTCGGGACAAATATATCGGCGTTGAGCATGATTCGAGTAGCGAAGGAAGAGGACAAGGAGAGTTAG
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| Protein seq | MQIMTSSSTSPTSPTSPLAAAADNGVAAAYFNFRGAERVPESHVWKGMHEKDTAPVAAADADGGDAVPVVDMSGGDDAAVAAVARAAEEWGGFLLVGHGVTAEALARVEAQAARLFALPADDKARGARRPGGGNTGYGVPPYLLRYPKQMWAEGYTFPPPAIRDEFRRVWPDAGDDYHRFWYAFTADRSIRHCMQLTYSVSAMEEYDASMRALGERLLAMFPRCPDPDQVVGLAAHTDSGFFTFILQSPVPGLQLLRRRPDRWVTVPGTPGALIVVVGDLFHVLTNGHFHSVFHRAVVNRERDRISMPYFLGPPADMKVTPLVATGSPESKAVYQAVTWPEYMAVRDKLFGTNISALSMIRVAKEEDKES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0178100 | RBH | 0.0 | 0.0 | 3.813251 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08540 | RBH | 0.0 | 0.0 | 0.965222 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0178100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005330 | RBH | 0.0 | 0.0 | 16.738358 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005310 | RBH | 0.0 | 0.0 | 9.263101 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005200 | RBH | 0.0 | 0.0 | 12.875727 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005260 | RBH | 0.0 | 0.106700 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005400 | RBH | 0.0 | 0.0 | 25.190969 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0070300 | RBH | 0 | 0 | 0.074293 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005160 | RBH | 0.0 | 0.0 | 3.060514 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0071800 | RBH | 0 | 0 | 0.037791 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005340 | RBH | 0.0 | 0.0 | 1.882904 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005350 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005200 | RBH | 0.0 | 0.0 | 3.181416 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005420 | RBH | 0.0 | 0.0 | 36.244980 |
