Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0005140 | OGI:01043860 | 10/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:4548507-4549804 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATGCGTCGCACACGCGTCTGCCGCTGTCATATCGAGGCCGCCGCAGCCGCCGTCGCATCGAGGCCGCCGAGCAGCCGTCGCATCGACCACGCCACGGCCGCCGTGGCTTCAACGCCGCCGCATAGACGTCGCCGTCTCCACCCGCCGCATCCGCCGTCGCAGGCGCATCAACATCGCCGCCTCCACCCCGTCCCATCCACCGTCGTAGCCACCCCGAAGACTCCGGCATCTTTTCCACCATCTGGTGTGGACTCTGTCGTAATAAGAACTAAATTTGAAATGTGCTTCATCTGGATTTGTTATTTGTTGATACATTTTATGGTTGAAGAAGTGATGAAGGTGGTAAATTATTTGGCAGGTTCACTGTGCCGTGTACAGTGGAAGGTGTTGGTAGCAGAACAAATATGCTGTATGATGTTGTTGTTTGTCTAAGTTTGAGCTGAATTTACGTTGTATGCCGTGTGCATAATTTGTTTCAACCATTGTTGTTTGTATCTTGTACAACTTTCATAAAGTAAGTACTTGAATCTTGTTGGTCTAAGTTTGATCTCTGTTCAAGAAGCAGCAGTGCCAGCAATTTTCAGTTTTCAGCATCAAAAAGCAGTACCAAGCAGCAAATTTAAATTTGTAGCAGTAATTCCAGCAAGAGGAGCAATAAGTTCAGGCAAACTGCAATTGTGACACAGTCAATTCAGCAGCATATATGTGTATTTCATCTCAGCAACACCAACTTAAGTTCCGCAGACAGCATCCACCAGTAACAAATAATCAGCAAGCATGCACCAGTAATAAATCTCGCAAGAAGCATCCATACAAAATGCACACAAACAGGGGCATCAATTATGCAAACCATACCACTAGAATTGACTGATAGACATATTACATCGGAACTTCAGTGAACAGAAACACACAAACATCAGCTTGCTCGAAAAGATTGGCTCCAACCAAAGCATTCCATCCAGTTGTGAGGGTTGCTCGCTTATCCTTGAATTTCATCAGTTTCATCGGCATCCAACCATCGCCGGCCTCCCGCCGATGCAGCGCCGCCGTCGCATCGAGGCCGTTGCCCTCCGACCCTGACGAATCGCCACCGCCACCGATGCAGCACAGCCGTCGCATCCAGACAGCCATACCCGCCGTCGCCGACGAATCGCCGCCGCCGCCAATGCAGCGCAGCCGTCGCATCCAGACTGCCGCGCCCGCCGCCGTTGACGATTCGCCGGGGCTACCCGATCTAGGCCACCATCGGGTCGCCAGTCCAACCTGCTCCCGCCGCCATCTATCGCTGCCATGCAT
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| CDS seq | ATGCATGGCAGCGATAGATGGCGGCGGGAGCAGGTTGGACTGGCGACCCGATGGTGGCCTAGATCGGGTAGCCCCGGCGAATCGTCAACGGCGGCGGGCGCGGCAGTCTGGATGCGACGGCTGCGCTGCATTGGCGGCGGCGGCGATTCGTCGGCGACGGCGGGTATGGCTGTCTGGATGCGACGGCTGTGCTGCATCGGTGGCGGTGGCGATTCGTCAGGGTCGGAGGGCAACGGCCTCGATGCGACGGCGGCGCTGCATCGGCGGGAGGCCGGCGATGGTTGGATGCCGATGAAACTGATGAAATTCAAGGATAAGCGAGCAACCCTCACAACTGGATGGAATGCTTTGGTTGGAGCCAATCTTTTCGAGCAAGCTGATGTTTGTGTGTTTCTGTTCACTGAAGTTCCGATTTTGCCTGAACTTATTGCTCCTCTTGCTGGAATTACTGCTACAAATTTAAATTTGCTGCTTGAGATCAAACTTAGACCAACAAGATTCAAGTACTTACTTTATGAAAGTTGTACAAGATACAAACAACAATGGTTGAAACAAATTATGCACACGGCATACAACAGTCCACACCAGATGGTGGAAAAGATGCCGGAGTCTTCGGGGTGGCTACGACGGTGGATGGGACGGGGTGGAGGCGGCGATGTTGATGCGCCTGCGACGGCGGATGCGGCGGGTGGAGACGGCGACGTCTATGCGGCGGCGTTGAAGCCACGGCGGCCGTGGCGTGGTCGATGCGACGGCTGCTCGGCGGCCTCGATGCGACGGCGGCTGCGGCGGCCTCGATATGACAGCGGCAGACGCGTGTGCGACGCATAG
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| Protein seq | MHGSDRWRREQVGLATRWWPRSGSPGESSTAAGAAVWMRRLRCIGGGGDSSATAGMAVWMRRLCCIGGGGDSSGSEGNGLDATAALHRREAGDGWMPMKLMKFKDKRATLTTGWNALVGANLFEQADVCVFLFTEVPILPELIAPLAGITATNLNLLLEIKLRPTRFKYLLYESCTRYKQQWLKQIMHTAYNSPHQMVEKMPESSGWLRRWMGRGGGGDVDAPATADAAGGDGDVYAAALKPRRPWRGRCDGCSAASMRRRLRRPRYDSGRRVCDA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0005140 | OsARC_05g0005140.01 | Chr05 | 4548507 | 4549804 | - | NAM | ||
| CDS seq | ATGCATGGCAGCGATAGATGGCGGCGGGAGCAGGTTGGACTGGCGACCCGATGGTGGCCTAGATCGGGTAGCCCCGGCGAATCGTCAACGGCGGCGGGCGCGGCAGTCTGGATGCGACGGCTGCGCTGCATTGGCGGCGGCGGCGATTCGTCGGCGACGGCGGGTATGGCTGTCTGGATGCGACGGCTGTGCTGCATCGGTGGCGGTGGCGATTCGTCAGGGTCGGAGGGCAACGGCCTCGATGCGACGGCGGCGCTGCATCGGCGGGAGGCCGGCGATGGTTGGATGCCGATGAAACTGATGAAATTCAAGGATAAGCGAGCAACCCTCACAACTGGATGGAATGCTTTGGTTGGAGCCAATCTTTTCGAGCAAGCTGATGTTTGTGTGTTTCTGTTCACTGAAGTTCCGATTTTGCCTGAACTTATTGCTCCTCTTGCTGGAATTACTGCTACAAATTTAAATTTGCTGCTTGAGATCAAACTTAGACCAACAAGATTCAAGTACTTACTTTATGAAAGTTGTACAAGATACAAACAACAATGGTTGAAACAAATTATGCACACGGCATACAACAGTCCACACCAGATGGTGGAAAAGATGCCGGAGTCTTCGGGGTGGCTACGACGGTGGATGGGACGGGGTGGAGGCGGCGATGTTGATGCGCCTGCGACGGCGGATGCGGCGGGTGGAGACGGCGACGTCTATGCGGCGGCGTTGAAGCCACGGCGGCCGTGGCGTGGTCGATGCGACGGCTGCTCGGCGGCCTCGATGCGACGGCGGCTGCGGCGGCCTCGATATGACAGCGGCAGACGCGTGTGCGACGCATAG
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| Protein seq | MHGSDRWRREQVGLATRWWPRSGSPGESSTAAGAAVWMRRLRCIGGGGDSSATAGMAVWMRRLCCIGGGGDSSGSEGNGLDATAALHRREAGDGWMPMKLMKFKDKRATLTTGWNALVGANLFEQADVCVFLFTEVPILPELIAPLAGITATNLNLLLEIKLRPTRFKYLLYESCTRYKQQWLKQIMHTAYNSPHQMVEKMPESSGWLRRWMGRGGGGDVDAPATADAAGGDGDVYAAALKPRRPWRGRCDGCSAASMRRRLRRPRYDSGRRVCDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0175450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0175450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005130 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005040 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019990 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0400000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018780 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0400300 | SBH | 0.674589 | 0.3429945 | 4.5827 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019110 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019240 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019610 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019780 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005260 | RBH | 0.0 | 0.0 | 0.0 |
