Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0004450 | OGI:05009810 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:3784904-3789455 | ||||||||
| Gene Symbol | PRX72, prx72, OsPrx72 | ||||||||||
| DNA seq | CTAGTGGCGCCATGGGTCATGGCAAGCTATACCAATGGAACAAGGTTGCAAGAACTACTTGCAAGCTAGGTATTATTATTAATGACACCTTAGTGGATGTGTCTTGCAACTTGCAGCACGATCATGTTTGATCAAAACTCTGTGCTATGATGCTGGAAATCAGCACCTAATCACTGGCTCAAGCCACATTCGGCATACGGCCATAATTCAGCTACTCCGATGAATGTAAATGTTGCTGTTTCTCTAGTCTCTATAAAATTTGCAGAAGCCAAGATTGGTAGGAAAATTATTGTGTACTGCTGAAGAGGAAAAGCTCAAGCAAAATTCTGTTCTTATCAGTCATCCCCCCCAAGCCCAGATGCAGCAAAGAAGAACAAACTTCGTGTAGTCCTCAAGTCATACAATCCTTCATGCAGTTAGTGTGCTGATGCTGTGATGATCAATGCTAAATAGATAAAATTCACATCTCCACTTTTTGTAAGGTATGATTTTTCACCTCTGATTCTGCATGTGTTTTAGTTGGATCCATCCAGTTATACTTGATGTTTCTTTCATATTTCAACTGTTTTAAATCTTTATATACCACAGTAAATGTCAGAGGTAAGGCAGAAAAGGGGAAGCACTGAAAGTTGCGAATAACATACTTACCTGTAGAGCAAAATTTTCTTGTTGGGTACTGCACAAAGAACATTATAAACCTTATCCATCAGTAAGGCTTGTGGAGAAAGTAAGCATATGGGGCAAGGAACAGAAAATAAAAGGAAAAGGACCCTTTCAATCACAAGAGGAGAAATAAATTTTCCAAGATCATGAATGAAATGTTTGTTTATTTAATTCCTGAACAACAAACAAGATAACCTTAAGCAGGCATCATCGGTGTTGACATCATTCTGTTTTACCTTTGGTAGTGACAATAACTAACAAAAAGCAAAGTTATTCAATCCAGAATCTTTTGATAGGAACTGAAGAACTACTTTGTGTTTGCTGTCAAAAAAAAAAAACTACGTTGCGCTATAGTTGACTTAAATTTTGTTACCCATGTTCATTGATTGTTCCGTTGCAATTGGACTACTGGTTTAAAAACTTAACCTGAGGCTACCAAACCACTTATGCTATCATTACACATTACTGATGAGAAGCAAACAAAGGGTTAGTCATATGAACTCGAAGATGCTTGTTTGACCATCTGTCGCAGTTTTAACTGTTATTGCATTTTCTTAACATGTAAGCATAAGGACTTTCTAATAAATGAAGGCTGACGTGGCAGTGACTAACAGCATAATAAAGGAAATCAATGCGAAATTCATCGATTGTTTCATTGTTATTAAGCTGTATTTCCATGTAAGAATTAAGATGTGGAAACATTTTACAATTTTACATAGTAGTTCAATTAGCTTTCATAAAGGTTAACCTCCAAAAGGAGACACCTTATTACACCTAAATAAATAACTTGTAAAGATTAAAATCAACTGGAGTATAGGAAGGACTATATTTATATGAAAAGTAAAAAAAAAACATTTTGTTGTCAAAAACATAGAATCCGTTTGTGCTAGTGGTACAACTCCAAACCCCCAAGTTAGCAAAATGGTTCTTAAATACTGAAATATCTTGAGACGTACAGTACTCTGATAGGTCGATTATTGGATCAATACTTAATAACGAGTAGTTGGATTGGATCATATGAAGGTCTAGTTGCAGTGTCGAGTATTGGTATTAGTATTAGTAGCCCGAGTCAACTGGATTAAACAAAGTAAGGGTTGGTGAGACACTGAGACTCGTCTCAACCATGATTGGGCGACCTTAGTCTAACAGAGACTTTTAATGTACGATGATTATATTAAACATACACTTGTTCCTAATGCCATGTTTATCGCCATAAGCAGCGGGACAGACTTGGATAACAAGAATATGCTTTGCATGGGAACCCTTCTTTTTCCAAGACCCTTAATATTTCACTGACAAAGGCATGTAGCAAAGATTTTGAGAAACAATTTGTAGCTCTTTTTTTATGAATAAATGCTGATCAATAGCCTTTTTTTTCTTTGCTAATCATATGTGTTCGCAATATGAACAGGCCTGGATACCAAGAACATTTGGCACCAATGCATATGCTGGACCATGCAGCTCTATTTTTCAGACTAAACAGACACAAGATGGTGACAGTATCAAGCACCACCATATACATGATCAGGTAACACAGAACATGAGAACAAGATCTGATGCCTCTCGATCATTGCACGGTAACAAGCAATTGAAGCATCTTGTCAGCTCATCACACTAAACATCACACTCTGCTGTCTGTACACGCATGCAAGCATGCAAAGGTTTGGTAAAACGAGTTGTAGCTCTTTTGTTATGAGTAAATGCTGATCAATAGCCATTTTTATTTGCCAATCTTATGTGCAAGGTTAACAATATGAACAGGCCCCAAGAACAACATCTGACACCAGTGCATGCTGGATGCAACAATTTATTTTTCAGACTGACAAGCACAAGATGGTGACAGTATCAACCACCAACACCTACATCAGGTAAACAAGATCTGATGTCTCTCAATCACTGTAACTGCAACAAACAATTGAAGCATCTAATCATCTCATCACACTGAACTTCACACACATCTCAATCACTGTCTGTGCATGCACACCTACTAACAAGCAGTGGTAATCAGTTAATTAATTAGCTTGCAGCCACTTCATCTGAAGAAGAGGAGGAAGAGGAAGTAAGGTGGTGATCATCAGCTGCAGTAGCAGTGACATTGACAGGGTTGACGACCCTGCAGTTGAGCCTGATCTCGCCCTGCGTCCCGGACAGCACGCCGATCTGCCCCATCTTGATCATGGCCCTGGCGAACTTGAGCCGGAACGTCGCCTCGCTGCGCACGAAGGAGTTCACCATGGCCTTGAGCGCGGCGTCCGTCAGCAGCGCCGCGTCCGACTGGAAGAGGCCGAGGTTGTTTGTCAGCCCGACGTAGTACCTGTTGTCGAACTTGGTCGGCGTCAGGATGTCCATGAAGGTGGTCGTCGTCGGGAACGTCTGGTTGCTGTTCGGCGGACAGATGCCCTTCAGCAAGAACGCGTACGCCTTGCTCAACGACGGATCAATCTGCGCACGGAATAATCACACAGGTCAGACGACTAATGATGAACTCAAAATGCTGGAAAACTCAAAACATCCCGTAAGGGGATATCCTCTCTCATTTTTTACATGTCACTTAAAAGTCATCAAAAAAAATTTAAAAAATTTAGTAGGATTGATTAATATGTGATATGTCACTTCATAAACATGCAAATTCAAATTCAATTTATACAAATAGAAACAAAAATAACAAATTTGACTATGAATTTAACGTGTAATTCATGGTCAAATTTATTATTTTTATTTTAAATTGTATAAATTGAATTTTAACTCGTATATTTGTAAAAAGATATATCACATATTGATCTATCTTCACAAATTTTTTAAATTTTTTTATAATTTTTTAAACGACATGCACAAAATGAGAGGATGTCCCCAAAGGGACGAAAATCCACTTCTGCATATGTTCTTCAGTTTTTTCATTTCTTTGATGAGTTGTTGGTTAAAGAAGATTTTACTCCATCGGTTGTGTTGGGGAAGTTGTAGATGCGATTGGTGAAGGAGTCGCAGTGGGAGACGCCGATGGTGTGGGCGCCGGAGAGGACGACCATGTCCTCGGCGGTGAGGTTCTTGGCGGTGAAGTTGGCGACGAGGTCGGCGGCGGTGGACGTTGGCGGCGGCAGGAAGTTGAGCGCGTCGTCCTCGAGGGAGGTCCGGCCGTCGCGCCGCCCCGCGGGCACCTGGTAGCCGAGGCCGCCGGACAGCACGACGCCGTCCCGCGCCATGAAGGCGACGACGTCGGCGCAGGAGACGACGCCCGGGCACGCCGCCTCGACGGCCGACTTGGCGCGGTCGATCACGTCGAAGAACCGGAGGCTCGGGTTGTTTGGCGCGGCGTCCTTCTCCGCCCTCGTCGTCGACCCCGGCACGGTGTCGATCAGCACCGAGCCGTCGCAGCCCTGCACGCATCATCACCGCGCCGCCATGGACGAAGACGACGATGAGTTGGCACTTGGCACATAAATCCATGAAGCAAAAGAAGAGTGGAGGGGTCTGACACAGCTTGCCTTCTTTTAAATCGGGATTAAAAATAATCTTTCGTTTTAAAAAGTGCCGTCTGGTGTTTTAACTTAGACCGGTTCCTATTTAAACCGGGATTATTGTAGATTTTAAGTAACGAACAAAAAATGATTTCTCTAATAATGGTGCTTTAGTACTTACCCTGACGAAGCAGTCGTGGAAATGCATGCGGATCATGGCCGGCGCGACGCCGGAGTCGTTGCGGAAGGCGGCGGCGACGACCTGCTGTATGAGCGTCTCCGCCGTCGGGCACGTCGTGTCGTAGAAGCCGACGTCGAGGCAGGCGCGGGCGCCCACGGCGGCGGCCGAGATGAGCGCGGCCACCACGGCGAGCTTCATGGCCGCGGAGCTCATCCTACCAAGGCTCTCAAAGTAAGCTGCCGTCGACGTAGAC
More
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| CDS seq | ATGAAGCTCGCCGTGGTGGCCGCGCTCATCTCGGCCGCCGCCGTGGGCGCCCGCGCCTGCCTCGACGTCGGCTTCTACGACACGACGTGCCCGACGGCGGAGACGCTCATACAGCAGGTCGTCGCCGCCGCCTTCCGCAACGACTCCGGCTACCCAACAAGAAAATTTTGCTCTACAGCTTGCCATGACCCATGGCGCCACTAG |
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| Protein seq | MKLAVVAALISAAAVGARACLDVGFYDTTCPTAETLIQQVVAAAFRNDSGYPTRKFCSTACHDPWRH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0004450 | OsARC_05g0004450.01 | Chr05 | 3784904 | 3789400 | - | NAM | ||
| CDS seq | ATGAAGCTCGCCGTGGTGGCCGCGCTCATCTCGGCCGCCGCCGTGGGCGCCCGCGCCTGCCTCGACGTCGGCTTCTACGACACGACGTGCCCGACGGCGGAGACGCTCATACAGCAGGTCGTCGCCGCCGCCTTCCGCAACGACTCCGGCTACCCAACAAGAAAATTTTGCTCTACAGCTTGCCATGACCCATGGCGCCACTAG
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| Protein seq | MKLAVVAALISAAAVGARACLDVGFYDTTCPTAETLIQQVVAAAFRNDSGYPTRKFCSTACHDPWRH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0004450 | OsARC_05g0004450.02 | Chr05 | 3787346 | 3789455 | - | IsoSeq | ||
| CDS seq | ATGTCACTGCTACTGCAGCTGATGATCACCACCTTACTTCCTCTTCCTCCTCTTCTTCAGATGAAGTGGCTGCAAGCT |
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| Protein seq | MSLLLQLMITTLLPLPPLLQMKWLQA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.077725 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0162000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0162000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004420 | RBH | 0.0 | 24.382486 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004470 | RBH | 0.0 | 6.202740 | 0.757099 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004520 | RBH | 0.0 | 8.951751 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0052400 | RBH | 0.2285215 | 64.384731 | 0.102149 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004300 | RBH | 0.0 | 0.667396 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0053000 | RBH | 0.7537235 | 48.218811 | 0.903156 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004430 | RBH | 0.0 | 0.614376 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004350 | RBH | 0.000000 | 11.049148 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004440 | RBH | 0.0 | 36.571724 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004460 | RBH | 0.0 | 2.151959 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004520 | RBH | 0.0 | 14.788467 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004400 | RBH | 0.0 | 1.691527 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004610 | RBH | 0.0 | 39.352661 | 0.0 |
