Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_04g0031790 OGI:04102580 | 15/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr04:33736080-33747641
Gene Symbol WSL5, OsWSL5, OsPPR4
DNA seq

aaagtcgagaacgagacgagacgagccttatctccaatccggattacacatcgcgtcgcgtccgcatccaattcccgggccattcgaaatccccaacaccagtagccggccgcggcatgcagttcctctcgctctccgccgccgccgcctcctcgccggcggccgccgtcctcccaccgaagccattcaaacccctctcctccgcggcccccttccgtcgcccctccccgcctccgccgcctccgtccccggtgccctcacccgcgccaccgccaccgccgcatcgcccttctccttctcctcccccgaaccccctctcctccaagctatggctgtccagcaagctctccccgccgccccccgagacactagagcagccagagccttctactactactactactactaccccgccgccgccggaaccggaggcggaggcggaggcgcggcggcaggaggaattccggcacaaggggaaggtcttcgtcgggaaccttccactgtgggccaggaaggcggagatcgccgagttcttccgccagtttgggcccctggagaaggtcgagctcgtgcgcggccacgacgatcccgagcgcaacgtgggcttctgcttcctatactacggaggcgacgacgcggacgccgcggcggagcgtgcggtggaggttgacggggttgacttccgtgggaggtcgctcaccgtgaggcttgacgacggcaggaaagggagggccagggctgagcagcgggcgcgctgggtgaacgacggccggaggcgcgagccacggtcgccgtggcacgagggcagggatgaggcgtgccgtgagttccgcagggtggtggaatcacggcccgacaactggcaggccgtcgtctctgcattcgagaggatacccaaggtgtggcttctcatctcaaaatctattttctgctatttccggtgaataataggacatcaattgcatattatgtatttttttgaaaccaaaccaattgcattgttataggtgtacacgtgtgtgttttcaagaatgcaaagcaggtgaagtttttctataagtaattttgcaggaagcagtaccgttcgcataggagtcctacaaatgtcatctgtatttcggaatagggattaatgtgccactgaataggcacatctttattatacaatgcatgtttgaatttacatgttagcaaacttgtcatgaaaattgtcatttcaatgccatcttcagctgtctggtgtagttagcgcatacttccctctttgtaagcaaagttttggatgtcctggatcttacttacccatttctttttaaaaaactgctccatgaggtaatattcattacacaaataccagatgcttcatcttttcctattagatttgatgctaattcatgtagtcaatatatcatatagttcactagttcagtatatttgttattttcttttagataatggatcctttattgaactcattaaatcacatcgaggtgatacaattgtcctcccgacctttgcattataagttataacttttcttgagaataggtatacaattacttcattgagatttctggttagtgagtgagcaactatattttttcgaataaaattataaaatgtgccaattcttaatgttcaaaaatctctacattcatggttatgtgttcacatcttcccaagaaagttcaagtgccacaggagaaaaaaacaggtctagctgatgcttattgaatttattgcattgaagatagaggcatctcataactcatattaccattagtacattgttgtatgcaatgcattgacacttctatcttgatgtttcagccatcaaggagagaattcggtctgatgattgtttattatgccaagcgaggtgataagcatcatgctcgtgcaacatttgagaacatgagagcaagaggaatagagcccaatgcatttgtttttacaaggtaggtttattctttctgctatttgcaaacgttttgttgctgttcttttccaatcatggacaaactggtgtaggataaaatgtgtagccagaggatttgtgtaaaaaaaaaacaaccctgaaacagacaggctacagaatttttactacgtaaagataagaacttacatgagataaacatcacgagggaactgaaagaacagttggtaaggaaccttacacagaatcagactaattggttccttggatcctggtttgccagcttgagataagaaaatgttcactgataaaattgttgacatagaaagccatgtaactttcatggtgtaagcatatatggtgcaactgtttatgcctggtatgttagctttagcaaaatctttatgattgctctaattgctgcttgttgatttgcctcctgcattaaatttacttcatttcatgcagccttgttcacgcttatgcagttgctagagatatgcgtggagctctgtcttgcgttgaggaaatgaaatctgagggtcttgagctgacaattgttacctacagtatccttatttcaggattcgccaaaattaatgattcccagtgagtattttctgctcattgactagagcctgttctacgtactactctcacatgctttgttcagaatgaatgatagatctgttatagctcttttatgcgtagcatattctcattcagttttaaacatttctctgtgcatttggccacttaaacattctctcgtctttcttggcccaaggaccctgactttttgctaatatttttttatcttgtttgaaagatctgcagataacttgttcaaagaggctaagaccaagcttagcagtctcaatggaatcatatatagtaacatcatacatgctcactggttagtatttgtcagatttataaacctcttggaacttaacactgatatgagattgatttaacactaaagtacctgtacttgcagtcaatctggcaatatggaacgggctgaagaactggtgcgtgaaatggaagaggatgggatagatgctcctatagatgtatatcacagtatgatgcatggatataccatcattcagaacgaaaataaatgtctagttgtctttgaacggcttaaggtatagtggaaactgtcttctcatgggtaaccgatctggctttcttatatttctattaagtccagtttggtcctcaatccttcttgtggtctaattttcatttcatggccagcttcaagaccatttagtttacacaactaaaatgccaaaactggtacaaataaccccttgtattcaaatcatcgtgttattatcccattttactgtgacaaagacacattgacaacttgaattaccattgaggttggtgagtcagcacttttttttttttgagcaagggcgactgcccccatttctattacccgaaatggaacatagtagtttacagagtgcaaggaagaaagacatgaagaaacagcataagggctagaaaagacaacaaaaggaagattacaggtttctcattcaacaggaattccacaccaccgtgcatatgaccctccatcaaccgaagccgaaagcacaaaaacaacccctcaaccatagcaaaagctcttctgacatcagtatgctgggccaaaccaaaagaacatcaactttcttttgtgttcctgaagccatgtaccttcatccttccagtcttctcgtcctagtgtaccatccatacttcgagctgaaaacatcatttgctacctgccttattagcctggctcccagaagcaacttttcttgatttgcctccaacatctgcagcacagcccaagtttcaatccaatgacaagtcaagtaaactacatcaatgggatcttaaaacggatgggacctgcctgctgtcctgttctgtttttgctccttatctctccctccagatctggtaatcttatatctccaggatccaagtttctttcagattccgtcagttagctattgtaaccagtcccttggccagacctcacctctggttttatttggagcaaacgaaagtaccaactcaactcaaagatattttggaattcatggctggtaatcaaagaccgattcaagttaagaaattcatttctggattttccagatagtgagcaaaagaaacaatggggcacgacaattgcaggcccatggtaggaagcatagcagaagctgtagtagggccaggagcagtgaagtgagaagcttatctgccctgattctggcagcagcaacaaagtgccagaagtccaggagtgggtgagaaaggagaggtgggaagtgggaatttctggccatggtggtgctgctcagccagaaaccttagtggtgctgaccagcgatgaaagtatggaactaatgtgctttgtgatcatattatccatggaagctacaagaatgaaaccacaccctttcctctcattaatttctgtatgttccttttaaatatgcatatgcattgatgtttaggtgtatgagtatttttttgggaaaatgacctatctgcatatcactgcattgcatatctgtacagtatcggagtatctgggaaacacagatgatgaagttacttgatctgtggatacaactttgtatcatcgaggatggtgtcaaggaaatgaggaagagaaaaaataagcatatcgctgttatcgggccacaccaccctgtggactaaaatggaggcggttttagctcagggatgtaatttgcacctgttttgatatttggaagacctgtgataaatggttctaaagtttaagggtgaaatactgaaacgtaaaattagactacaagaggagttgagggaccagagatagatgtattcataatttttattttttctatctccccttctgatctgatttttcctgttttttgcaggagtgtggctttaaaccatcaataatctcttatgggtgccttcttaatttgtatgtcaaggtaaaagtaattctgttgcgtgctttcttgtcagttttcctgtaattttgtgtgttcccttagtagaaggaaacaaaaaattgtgcatcccagacaagtgtttttttccctcgtaaattatgatgtttaaacactcctttctgcaccattgatttctattcgttatatgactagtattctgaatatctaagagtccttggattcacctttttctgaaagcctaaggcaagggaagctttatgtcgagtttcttatacattgaacatgacaatcttcaactttgaaactcaaacctgcccctttattattaattgtaagataggttacttgagacaactcttaacagtgatcactgatgttgctctggtttcttttcttttctcttttcagataggtaaggttgccaaagcattatctattagcaaagaaatggagtcttgtggcatcaaacataataataaaacatactctatgcttatcaatggatttatccatttgcacgactttgcaaatgctttcgccatatttgaggaaatgctaagatcaggtctacaacctgatcgtgccatatacaatttgcttatagaggcattttgtaagatgggaaacatggatcgtgctatttgcattttggaaaaaatgcagaaggaacgaatgcaaccatcaaatagagcattcaggcctatcatagagggatatgcagttgctggtgatatgaaaagtgctttggatactcttgatctgatgcggcgaagtggttgtattcccactgtaatgacttacaatgctctcattcacgggctagttagaaagcacaaggtatttttcaagtacatgctagtttcttcaaatctaatcctgtcatgtggcatttactttaaatttgtgtttataggttcaaagagctgtctctgtgcttgataagatgtccatcgctggcattacaccaaatgagcatacatacacaatcattatgagaggttatgctgccagtggagatattgggaaggcttttgaatacttcaccaaaataaaagagagtggtctaaaactcgatgtgtacatttatgaaacattgctcagagcctgttgcaaatcagggaggatgcagagtgccttagcagtcactcgtgagatgagcttccaaaagataccaaggaatacatttatatataatattttgattgatgggtaggtgttctagataagctctttagccaatgtttttactgactagtaacgatctttttaccgactcagtactcagggacgcttgtgaccatttatttatgtgttgactgcatcgaactacttagtcaactgctgtactgactcagggatacaagaaagtattatggaaaaaaataatatagggggtagagaacaacccctcaatatttttagtagaaggttgtggttgaacctgtggagggctagcacagcgaactgtgctgttagccagtaggtcctaatagtctcctcacatgaaactattatgatatttcattggattagtcatacattagttttgaaaatttgtattatatactgagttcatgttttatttgagtcttgctgtaatttatgaagttttataaaagcggtatattttcctttttgcctgtttcgtcacaaatccttttgtgtagatgggctcggagaggtgatgtttgggaagcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacctcctatataaatgcatgctgcaaggcaggagacatgcaggtacgagaattttgcattggaatacttagtttcttattacttattgtgagttgtaaccgtgtagtggagatagcctgattttgataggatatgtgcacatgttttaaggtagctgaccaaaatattttacaatgccatgactatatgcccgaattatttcagcactacagatttacctaggtggctacatattcaaatttggcacttgtgaatggagaagtattctcttggggccttcttgtaatctatccaattatttttttttataaaatgatttgtttgtagagagcagaaaaggtgattgaagaaatggtagatgttggactaaaacctaatgtcaagacatatactaccttgattaaaggttgggcaagagtgtcacttccagacagggcattgaaatgctttgaggagatgaaacttgctgggttgaaacctgatgaggcttcttatcattgcttggtgacttcacttctgtcaagggcaactgtaatggagggaagtacctacacaggaatcattagtgtctgtagagaaatgtctgagaatgatttgactgttgatcttcgcactgctgttcactggtctagatggcttcacaagattgagaggactggaggggcactaacagaagcgcttcagagaatatttcctcctgattggaattcattagaatttttaggagagccatccagttctataagcatgggggagtctgatgattacagtgattcagattttagcggtgatgaagatgaggatcataatattgatgatagctgaaaaactctagattccagagcctgtttttcttgttctgtgccctcactttttgtcctttggttctgccagagtggatgaccgaacaaggtattatgtgttgaactgttaatatgtgtttaatatgccatttccttttggtgatgtttctaaaaagcacacataataattcttgaaaaggagtctgccaacaatcatttgtcattactcattgccactttttggagttcctggaaattgcattgaactaacactctttgtttccatggcagcaatgtctttgatcaaactgtgccctcacattcagacaccagtggcttgtggactatccaagagcgtttggaatcttatagtgcaataagcgtgagctggctggcctctgctgcgtttcttcaagagcaacagtcagtaacagttctactgggactgaagacacaggctgtcaatgcaacagacgaagcttactcagttatgcgtgtagctgtacatatcaatggctggcacaggtaaatattcttgagatattgacagattcaattgttgtttctctccatcctttcagtatagtccaacttgatataaaatccaattccatatatatgtgtataaatgcaagtaaagctataccacgttaccagttaccacccacaccccttcttggcttgccttttgtagtgtgccatgtgaaatgtaccgaccatgatagagcctgcgtgcccatttttcaacatccaaatgttaggagtggtaggagcgcttataggcatatgcttgaacaccactttgattggcagaattttgtaggggcagcacagtgtgcctacaaggtttggttttgtaaccacatccctggacaagccgttcgatgcttatttgaatactagtacgacaaaccaatctgtgtcgtggtgctcgtaaaagctgagatcatttaaacttgtaagtagaaagttggacgagcttttttctcttcgagagaatgcacaggccctcatgttctttgttttgatgatcttaaaaaaaccatagtcaaggtaaataggagcaaagattggtatcttgcacattattgcgggttgggcttattcaatgggggaattccctattgaaactgaagtacaagtccaatcaagtgctagatgatgactgttttctcatttaaggtttggcatcttccagtacagcagcttcaatcaaatgggccttaacgtagctcagcccgattcaatattacttggaattgcacgcctctgtccaagctgaaagcttttactagtaggacacttgaatgcctgcacaagacggcattaatgctgtgcttatgagcccgatttcttgagactggtgttgagtttgtgcgtatgtgtgtgctatgagctgcgaatcttagctggccggtatctttcattgaatcgaaagtggcctccccattcaagtcttgcccacaagataaaacagtgcttcatttatgcctgttatttaattttgcttagctgcatctcgcttctccattcatacaccataaattctttcaaagaaatcttgattgtattagtgttgtattaggcctttgttcggagagaaaatttcatagtaccaattaccccctccatcccaaaatataataacttctatcactaagagtttgttccaaaataaaataacttatccaccaacattctcttcctaactaatcataaccctgcaccatttaatttttccatctacctccacttctcaaccaatcacaatatcatcatatttaattctatctactttcttaataattgtgtttaatcctaaaatttcttatgttctgggacggagatagtagcatgtatgaacagtatgaagtactacaatgtaaatattttgcctgaaacatgctttgttttttttcatgccaaataattcagtgtgatatttggtaattcatacagtattccttccttttatacccactctagtttcaaatacttgtcactagttactacttactactagcttttttccctaaaaaagttactagctttttagctttgatcactcgccctttttgcaaaaatgaaacatatgtatacttaaaatatgttgcattagcgatgtgtgttccataaatacaaccagacaactttcactaataataacttaatctttaaaagttattaatggttaaaggtgaaacattatggttaacattgacaagtaaataaagatggaaggaatacatattttctaaagataggtacggtcctacaggctttgtccagcaaaaaaaaaaggacagttctgcagaacaaaaatattttggtggagtttttaaacattgcatccaacagaagccttatggtatattttttttctatgataagagaatttattctggttttttacttaaaagaagctgcaaccaattattatagaatttgcagaatgaatagctgcggattacaaaattatgaaacacaaagtagaaaactactaagaataccacccttaaaacaaagatctacatctatggttagtcagaggggagtagattctaatccctcgaggggatatcccttcgtatatctttttcttccaaattcgatgcaaatagttgtgaaaaattctgaaaaaaattgacaacgtagagtataatgatacctactagtccaccaaaattcatgttcaaattcgatctacacatcgagaaacaaaaaagacaaatttagatataaacagtacgttactattcatacgctgaatttgtcttttttatatctcgacgtgggagttgagtttggacttaagattttgtgaagttgtatatatgtgttgtatgaatgttgtcaaatttttccagaatttttcataaccgtttagatggtttttgagcaaacgagcgaacatcccctcgagggattagaatagtttcccttagtcagagtatgtttaacgttgtttgctccaatggttataagttgtacagtctctgaaaccagcagccgatctttgtcgatcgaatttcgatcccatcactgccgatgaactgacattgaaccaaaacggaagaagccttatggtatgggtggagaatgaaaataggaaagagacaggaaacatctttattcctaaactagtactccctccgtcccataatataagggattttagaggtatgtgatgtttcctcggactacgaatctagatcacatccctctaaaatcccttatattatgggatggagagagtaacaattaataggaaatgacacaacaggatagcagaaactgaaaacttcctttcattttctggggaaaaaaggggaaatttgacgtttggagctcatctgtagtggagatttaactgttccaaaagtttagaatagtggcagctatgttgatacagcactatgttatcttttctcagcagacgtgctggtaaaaaaaatttagtgcgaagggaccattgctagttggcccttacttttatattactgtaactgatccagaattaaatttctacctattttctttgaaagagcacgaaagcacatatcaataattttggtaatattattcatttatcataatctattttgctatacgctccgaccactgcacaatgacagtatttatttcgcagagaggccaacaggagctataaaatgatgttccgattgctgttaattacctggaaactgtactgtactgggcgagtgatgaaggtaggatggaagcgccaagctgctgtgaacaactgagggaaaattcaggtgtaatttcctctctagtctctagaattacaaggcaaggtatatatttttaacgtttttgtttatgaatagaagatgagctatgcttagattatggattgtatagtacccgcccattgaggctgggctgggtcctccagaatatatacccctgcatgtgtcactgacatcatttggtcgacatgatagaaatatttgggagcaaaccctagtaagtgcactcatagtagggtataactaatactctatttgtataaactataaagaaatgcaagtaccacccgctaactgaattagtaattgct

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CDS seq

agtcgagaacgagacgagacgagccttatctccaatccggattacacatcgcgtcgcgtccgcatccaattcccgggccattcgaaatccccaacaccagtagccggccgcggcatgcagttcctctcgctctccgccgccgccgcctcctcgccggcggccgccgtcctcccaccgaagccattcaaacccctctcctccgcggcccccttccgtcgcccctccccgcctccgccgcctccgtccccggtgccctcacccgcgccaccgccaccgccgcatcgcccttctccttctcctcccccgaaccccctctcctccaagctatggctgtccagcaagctctccccgccgccccccgagacactagagcagccagagccttctactactactactactactaccccgccgccgccggaaccggaggcggaggcggaggcgcggcggcaggaggaattccggcacaaggggaaggtcttcgtcgggaaccttccactgtgggccaggaaggcggagatcgccgagttcttccgccagtttgggcccctggagaaggtcgagctcgtgcgcggccacgacgatcccgagcgcaacgtgggcttctgcttcctatactacggaggcgacgacgcggacgccgcggcggagcgtgcggtggaggttgacggggttgacttccgtgggaggtcgctcaccgtgaggcttgacgacggcaggaaagggagggccagggctgagcagcgggcgcgctgggtgaacgacggccggaggcgcgagccacggtcgccgtggcacgagggcagggatgaggcgtgccgtgagttccgcagggtggtggaatcacggcccgacaactggcaggccgtcgtctctgcattcgagaggatacccaagccatcaaggagagaattcggtctgatgattgtttattatgccaagcgaggtgataagcatcatgctcgtgcaacatttgagaacatgagagcaagaggaatagagcccaatgcatttgtttttacaagccttgttcacgcttatgcagttgctagagatatgcgtggagctctgtcttgcgttgaggaaatgaaatctgagggtcttgagctgacaattgttacctacagtatccttatttcaggattcgccaaaattaatgattcccaatctgcagataacttgttcaaagaggctaagaccaagcttagcagtctcaatggaatcatatatagtaacatcatacatgctcactgtcaatctggcaatatggaacgggctgaagaactggtgcgtgaaatggaagaggatgggatagatgctcctatagatgtatatcacagtatgatgcatggatataccatcattcagaacgaaaataaatgtctagttgtctttgaacggcttaaggagtgtggctttaaaccatcaataatctcttatgggtgccttcttaatttgtatgtcaagataggtaaggttgccaaagcattatctattagcaaagaaatggagtcttgtggcatcaaacataataataaaacatactctatgcttatcaatggatttatccatttgcacgactttgcaaatgctttcgccatatttgaggaaatgctaagatcaggtctacaacctgatcgtgccatatacaatttgcttatagaggcattttgtaagatgggaaacatggatcgtgctatttgcattttggaaaaaatgcagaaggaacgaatgcaaccatcaaatagagcattcaggcctatcatagagggatatgcagttgctggtgatatgaaaagtgctttggatactcttgatctgatgcggcgaagtggttgtattcccactgtaatgacttacaatgctctcattcacgggctagttagaaagcacaaggttcaaagagctgtctctgtgcttgataagatgtccatcgctggcattacaccaaatgagcatacatacacaatcattatgagaggttatgctgccagtggagatattgggaaggcttttgaatacttcaccaaaataaaagagagtggtctaaaactcgatgtgtacatttatgaaacattgctcagagcctgttgcaaatcagggaggatgcagagtgccttagcagtcactcgtgagatgagcttccaaaagataccaaggaatacatttatatataatattttgattgatggatgggctcggagaggtgatgtttgggaagcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacctcctatataaatgcatgctgcaaggcaggagacatgcagagagcagaaaaggtgattgaagaaatggtagatgttggactaaaacctaatgtcaagacatatactaccttgattaaaggttgggcaagagtgtcacttccagacagggcattgaaatgctttgaggagatgaaacttgctgggttgaaacctgatgaggcttcttatcattgcttggtgacttcacttctgtcaagggcaactgtaatggagggaagtacctacacaggaatcattagtgtctgtagagaaatgtctgagaatgatttgactgttgatcttcgcactgctgttcactggtctagatggcttcacaagattgagaggactggaggggcactaacagaagcgcttcagagaatatttcctcctgattggaattcattagaatttttaggagagccatccagttctataagcatgggggagtctgatgattacagtgattcagattttagcggtgatgaagatgaggatcataatattgatgat

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Protein seq

SRERDETSLISNPDYTSRRVRIQFPGHSKSPTPVAGRGMQFLSLSAAAASSPAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNPLSSKLWLSSKLSPPPPETLEQPEPSTTTTTTTPPPPEPEAEAEARRQEEFRHKGKVFVGNLPLWARKAEIAEFFRQFGPLEKVELVRGHDDPERNVGFCFLYYGGDDADAAAERAVEVDGVDFRGRSLTVRLDDGRKGRARAEQRARWVNDGRRREPRSPWHEGRDEACREFRRVVESRPDNWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCIPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWLHKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDD

Function Pentatricopeptide repeat-containing protein At5g04810, chloroplastic [UniProtKB/Swiss-Prot:Q0WMY5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_04g0031790 OsARC_04g0031790.01 Chr04 33736139 33743685 + NAM
CDS seq

atgcagttcctctcgctctccgccgccgccgcctcctcgccggcggccgccgtcctcccaccgaagccattcaaacccctctcctccgcggcccccttccgtcgcccctccccgcctccgccgcctccgtccccggtgccctcacccgcgccaccgccaccgccgcatcgcccttctccttctcctcccccgaaccccctctcctccaagctatggctgtccagcaagctctccccgccgccccccgagacactagagcagccagagccttctactactactactactactaccccgccgccgccggaaccggaggcggaggcggaggcgcggcggcaggaggaattccggcacaaggggaaggtcttcgtcgggaaccttccactgtgggccaggaaggcggagatcgccgagttcttccgccagtttgggcccctggagaaggtcgagctcgtgcgcggccacgacgatcccgagcgcaacgtgggcttctgcttcctatactacggaggcgacgacgcggacgccgcggcggagcgtgcggtggaggttgacggggttgacttccgtgggaggtcgctcaccgtgaggcttgacgacggcaggaaagggagggccagggctgagcagcgggcgcgctgggtgaacgacggccggaggcgcgagccacggtcgccgtggcacgagggcagggatgaggcgtgccgtgagttccgcagggtggtggaatcacggcccgacaactggcaggccgtcgtctctgcattcgagaggatacccaagcatcatgctcgtgcaacatttgagaacatgagagcaagaggaatagagcccaatgcatttgtttttacaagccttgttcacgcttatgcagttgctagagatatgcgtggagctctgtcttgcgttgaggaaatgaaatctgagggtcttgagctgacaattgttacctacagtatccttatttcaggattcgccaaaattaatgattcccaatctgcagataacttgttcaaagaggctaagaccaagcttagcagtctcaatggaatcatatatagtaacatcatacatgctcactgtcaatctggcaatatggaacgggctgaagaactggtgcgtgaaatggaagaggatgggatagatgctcctatagatataggtaaggttgccaaagcattatctattagcaaagaaatggagtcttgtggcatcaaacataataataaaacatactctatgcttatcaatggatttatccatttgcacgactttgcaaatgctttcgccatatttgaggaaatgctaagatcaggtctacaacctgatcgtgccatatacaatttgcttatagaggcattttgtaagatgggaaacatggatcgtgctatttgcattttggaaaaaatgcagaaggaacgaatgcaaccatcaaatagagcattcaggcctatcatagagggatatgcagttgctggtgatatgaaaagtgctttggatactcttgatctgatgcggcgaagtggttgtattcccactgtaatgacttacaatgctctcattcacgggctagttagaaagcacaaggttcaaagagctgtctctgtgcttgataagatgtccatcgctggcattacaccaaatgagcatacatacacaatcattatgagaggttatgctgccagtggagatattgggaaggcttttgaatacttcaccaaaataaaagagagtggtctaaaactcgatgtgtacatttatgaaacattgctcagagcctgttgcaaatcagggaggatgcagagtgccttagcagtcactcgtgagatgagcttccaaaagataccaaggaatacatttatatataatattttgattgatggatgggctcggagaggtgatgtttgggaagcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacctcctatataaatgcatgctgcaaggcaggagacatgcagagagcagaaaaggtgattgaagaaatggtagatgttggactaaaacctaatgtcaagacatatactaccttgattaaaggttgggcaagagtgtcacttccagacagggcattgaaatgctttgaggagatgaaacttgctgggttgaaacctgatgaggcttcttatcattgcttggtgacttcacttctgtcaagggcaactgtaatggagggaagtacctacacaggaatcattagtgtctgtagagaaatgtctgagaatgatttgactgttgatcttcgcactgctgttcactggtctagatggcttcacaagattgagaggactggaggggcactaacagaagcgcttcagagaatatttcctcctgattggaattcattagaatttttaggagagccatccagttctataagcatgggggagtctgatgattacagtgattcagattttagcggtgatgaagatgaggatcataatattgatgatagctga

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Protein seq

MQFLSLSAAAASSPAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNPLSSKLWLSSKLSPPPPETLEQPEPSTTTTTTTPPPPEPEAEAEARRQEEFRHKGKVFVGNLPLWARKAEIAEFFRQFGPLEKVELVRGHDDPERNVGFCFLYYGGDDADAAAERAVEVDGVDFRGRSLTVRLDDGRKGRARAEQRARWVNDGRRREPRSPWHEGRDEACREFRRVVESRPDNWQAVVSAFERIPKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCIPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWLHKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDDS

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Gene Transcript Chromosome Start End Strand Source
OsARC_04g0031790 OsARC_04g0031790.02 Chr04 33737933 33743685 + NAM
CDS seq

atgcatttgtttttacaagttgctagagatatgcgtggagctctgtcttgcgttgaggaaatgaaatctgagggtcttgagctgacaattgttacctacagtatccttatttcaggattcgccaaaattaatgattcccaatctgcagataacttgttcaaagaggctaagaccaagcttagcagtctcaatggaatcatatatagtaacatcatacatgctcactgtcaatctggcaatatggaacgggctgaagaactggtgcgtgaaatggaagaggatgggatagatgctcctatagatgtatatcacagtatgatgcatggatataccatcattcagaacgaaaataaatgtctagttgtctttgaacggcttaaggagtgtggctttaaaccatcaataatctcttatgggtgccttcttaatttgtatgtcaagataggtaaggttgccaaagcattatctattagcaaagaaatggagtcttgtggcatcaaacataataataaaacatactctatgcttatcaatggatttatccatttgcacgactttgcaaatgctttcgccatatttgaggaaatgctaagatcaggtctacaacctgatcgtgccatatacaatttgcttatagaggcattttgtaagatgggaaacatggatcgtgctatttgcattttggaaaaaatgcagaaggaacgaatgcaaccatcaaatagagcattcaggcctatcatagagggatatgcagttgctggtgatatgaaaagtgctttggatactcttgatctgatgcggcgaagtggttgtattcccactgtaatgacttacaatgctctcattcacgggctagttagaaagcacaaggttcaaagagctgtctctgtgcttgataagatgtccatcgctggcattacaccaaatgagcatacatacacaatcattatgagaggttatgctgccagtggagatattgggaaggcttttgaatacttcaccaaaataaaagagagtggtctaaaactcgatgtgtacatttatgaaacattgctcagagcctgttgcaaatcagggaggatgcagagtgccttagcagtcactcgtgagatgagcttccaaaagataccaaggaatacatttatatataatattttgattgatggatgggctcggagaggtgatgtttgggaagcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacctcctatataaatgcatgctgcaaggcaggagacatgcagagagcagaaaaggtgattgaagaaatggtagatgttggactaaaacctaatgtcaagacatatactaccttgattaaaggttgggcaagagtgtcacttccagacagggcattgaaatgctttgaggagatgaaacttgctgggttgaaacctgatgaggcttcttatcattgcttggtgacttcacttctgtcaagggcaactgtaatggagggaagtacctacacaggaatcattagtgtctgtagagaaatgtctgagaatgatttgactgttgatcttcgcactgctgttcactggtctagatggcttcacaagattgagaggactggaggggcactaacagaagcgcttcagagaatatttcctcctgattggaattcattagaatttttaggagagccatccagttctataagcatgggggagtctgatgattacagtgattcagattttagcggtgatgaagatgaggatcataatattgatgatagctga

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Protein seq

MHLFLQVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCIPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWLHKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDDS

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Gene Transcript Chromosome Start End Strand Source
OsARC_04g0031790 OsARC_04g0031790.03 Chr04 33737933 33743685 + NAM
CDS seq

atgattgtttattatgccaagcgaggtgataagcatcatgctcgtgcaacatttgagaacatgagagcaagaggaatagagcccaatgcatttgtttttacaagccttgttcacgcttatgcagttgctagagatatgcgtggagctctgtcttgcgttgaggaaatgaaatctgagggtcttgagctgacaattgttacctacagtatccttatttcaggattcgccaaaattaatgattcccaatctgcagataacttgttcaaagaggctaagaccaagcttagcagtctcaatggaatcatatatagtaacatcatacatgctcactgtcaatctggcaatatggaacgggctgaagaactggtgcgtgaaatggaagaggatgggatagatgctcctatagatgtatatcacagtatgatgcatggatataccatcattcagaacgaaaataaatgtctagttgtctttgaacggcttaaggagtgtggctttaaaccatcaataatctcttatgggtgccttcttaatttgtatgtcaagataggtaaggttgccaaagcattatctattagcaaagaaatggagtcttgtggcatcaaacataataataaaacatactctatgcttatcaatggatttatccatttgcacgactttgcaaatgctttcgccatatttgaggaaatgctaagatcaggtctacaacctgatcgtgccatatacaatttgcttatagaggcattttgtaagatgggaaacatggatcgtgctatttgcattttggaaaaaatgcagaaggaacgaatgcaaccatcaaatagagcattcaggcctatcatagagggatatgcagttgctggtgatatgaaaagtgctttggatactcttgatctgatgcggcgaagtggttgtattcccactgtaatgacttacaatgctctcattcacgggctagttagaaagcacaaggttcaaagagctgtctctgtgcttgataagatgtccatcgctggcattacaccaaatgagcatacatacacaatcattatgagaggttatgctgccagtggagatattgggaaggcttttgaatacttcaccaaaataaaagagagtggtctaaaactcgatgtgtacatttatgaaacattgctcagagcctgttgcaaatcagggaggatgcagagtgccttagcagtcactcgtgagatgagcttccaaaagataccaaggaatacatttatatataatattttgattgatggatgggctcggagaggtgatgtttgggaagcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacctcctatataaatgcatgctgcaaggcaggagacatgcagagagcagaaaaggtgattgaagaaatggtagatgttggactaaaacctaatgtcaagacatatactaccttgattaaaggttgggcaagagtgtcacttccagacagggcattgaaatgctttgaggagatgaaacttgctgggttgaaacctgatgaggcttcttatcattgcttggtgacttcacttctgtcaagggcaactgtaatggagggaagtacctacacaggaatcattagtgtctgtagagaaatgtctgagaatgatttgactgttgatcttcgcactgctgttcactggtctagatggcttcacaagattgagaggactggaggggcactaacagaagcgcttcagagaatatttcctcctgattggaattcattagaatttttaggagagccatccagttctataagcatgggggagtctgatgattacagtgattcagattttagcggtgatgaagatgaggatcataatattgatgatagctga

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Protein seq

MIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCIPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWLHKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDDS

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Gene Transcript Chromosome Start End Strand Source
OsARC_04g0031790 OsARC_04g0031790.04 Chr04 33736080 33747641 + IsoSeq
CDS seq

agtcgagaacgagacgagacgagccttatctccaatccggattacacatcgcgtcgcgtccgcatccaattcccgggccattcgaaatccccaacaccagtagccggccgcggcatgcagttcctctcgctctccgccgccgccgcctcctcgccggcggccgccgtcctcccaccgaagccattcaaacccctctcctccgcggcccccttccgtcgcccctccccgcctccgccgcctccgtccccggtgccctcacccgcgccaccgccaccgccgcatcgcccttctccttctcctcccccgaaccccctctcctccaagctatggctgtccagcaagctctccccgccgccccccgagacactagagcagccagagccttctactactactactactactaccccgccgccgccggaaccggaggcggaggcggaggcgcggcggcaggaggaattccggcacaaggggaaggtcttcgtcgggaaccttccactgtgggccaggaaggcggagatcgccgagttcttccgccagtttgggcccctggagaaggtcgagctcgtgcgcggccacgacgatcccgagcgcaacgtgggcttctgcttcctatactacggaggcgacgacgcggacgccgcggcggagcgtgcggtggaggttgacggggttgacttccgtgggaggtcgctcaccgtgaggcttgacgacggcaggaaagggagggccagggctgagcagcgggcgcgctgggtgaacgacggccggaggcgcgagccacggtcgccgtggcacgagggcagggatgaggcgtgccgtgagttccgcagggtggtggaatcacggcccgacaactggcaggccgtcgtctctgcattcgagaggatacccaagccatcaaggagagaattcggtctgatgattgtttattatgccaagcgaggtgataagcatcatgctcgtgcaacatttgagaacatgagagcaagaggaatagagcccaatgcatttgtttttacaagccttgttcacgcttatgcagttgctagagatatgcgtggagctctgtcttgcgttgaggaaatgaaatctgagggtcttgagctgacaattgttacctacagtatccttatttcaggattcgccaaaattaatgattcccaatctgcagataacttgttcaaagaggctaagaccaagcttagcagtctcaatggaatcatatatagtaacatcatacatgctcactgtcaatctggcaatatggaacgggctgaagaactggtgcgtgaaatggaagaggatgggatagatgctcctatagatgtatatcacagtatgatgcatggatataccatcattcagaacgaaaataaatgtctagttgtctttgaacggcttaaggagtgtggctttaaaccatcaataatctcttatgggtgccttcttaatttgtatgtcaagataggtaaggttgccaaagcattatctattagcaaagaaatggagtcttgtggcatcaaacataataataaaacatactctatgcttatcaatggatttatccatttgcacgactttgcaaatgctttcgccatatttgaggaaatgctaagatcaggtctacaacctgatcgtgccatatacaatttgcttatagaggcattttgtaagatgggaaacatggatcgtgctatttgcattttggaaaaaatgcagaaggaacgaatgcaaccatcaaatagagcattcaggcctatcatagagggatatgcagttgctggtgatatgaaaagtgctttggatactcttgatctgatgcggcgaagtggttgtattcccactgtaatgacttacaatgctctcattcacgggctagttagaaagcacaaggttcaaagagctgtctctgtgcttgataagatgtccatcgctggcattacaccaaatgagcatacatacacaatcattatgagaggttatgctgccagtggagatattgggaaggcttttgaatacttcaccaaaataaaagagagtggtctaaaactcgatgtgtacatttatgaaacattgctcagagcctgttgcaaatcagggaggatgcagagtgccttagcagtcactcgtgagatgagcttccaaaagataccaaggaatacatttatatataatattttgattgatggatgggctcggagaggtgatgtttgggaagcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacctcctatataaatgcatgctgcaaggcaggagacatgcagagagcagaaaaggtgattgaagaaatggtagatgttggactaaaacctaatgtcaagacatatactaccttgattaaaggttgggcaagagtgtcacttccagacagggcattgaaatgctttgaggagatgaaacttgctgggttgaaacctgatgaggcttcttatcattgcttggtgacttcacttctgtcaagggcaactgtaatggagggaagtacctacacaggaatcattagtgtctgtagagaaatgtctgagaatgatttgactgttgatcttcgcactgctgttcactggtctagatggcttcacaagattgagaggactggaggggcactaacagaagcgcttcagagaatatttcctcctgattggaattcattagaatttttaggagagccatccagttctataagcatgggggagtctgatgattacagtgattcagattttagcggtgatgaagatgaggatcataatattgatgat

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Protein seq

SRERDETSLISNPDYTSRRVRIQFPGHSKSPTPVAGRGMQFLSLSAAAASSPAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNPLSSKLWLSSKLSPPPPETLEQPEPSTTTTTTTPPPPEPEAEAEARRQEEFRHKGKVFVGNLPLWARKAEIAEFFRQFGPLEKVELVRGHDDPERNVGFCFLYYGGDDADAAAERAVEVDGVDFRGRSLTVRLDDGRKGRARAEQRARWVNDGRRREPRSPWHEGRDEACREFRRVVESRPDNWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCIPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWLHKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDD

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr04 33736978 33737967 + OsARC_04g0031790.04 OsARC_04g0031790.01,OsARC_04g0031790.04 All
A3 Chr04 33738037 33738504 + OsARC_04g0031790.04,OsARC_04g0031790.01,OsARC_04g0031790.03 OsARC_04g0031790.01,OsARC_04g0031790.02,OsARC_04g0031790.04,OsARC_04g0031790.03 All

Expression

Leaf Root Panicle
FPKM 0.752517 0.032917 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0684500 RBH 7.525572 6.690212 3.419086
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g58780 RBH 5.388298 4.514382 0.978779
Nipponbare | IRGSP 1.0 | RAP-db Os04g0684500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0031600 RBH 2.583441 0.000000 6.868322
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0032390 RBH 0.846592 0.000000 2.520443
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0031950 RBH 7.195992 0.320496 7.931231
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0000530 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0032060 RBH 27.177427 0.000000 19.544342
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0553100 SBH 18.820776 9.707705 3.4590095
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0030680 RBH 2.508131 0.000000 1.120550
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0558900 RBH 19.0397445 13.143123 8.1759885
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0031160 RBH 1.542833 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0030950 RBH 1.548063 3.420515 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0031090 RBH 7.833000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0031660 RBH 3.837783 0.267831 2.123800
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0031660 RBH 1.441201 2.419410 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G031140 RBH 2.520428 1.132409 1.723301
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0030880 RBH 10.261189 8.101647 8.335156
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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