Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0031710 | OGI:04102350 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:33679129-33684759 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acccttgccattttaattgctcgcactaaattagcccaacattctcctcgcttcctcctctttctctctctacgccctcgtctccctctctctctctctctctctctctctctgcatcttcttcttcttcttccagtgctcggctctctcttttactcaactgctcacactccccaaacaaccaacccacctccatctccatctccatgtggtgctgaggccggagcagcagcgaggaatcggagcggtagccatggcgccgtgaattcgcgcgaggacgtgcgatctctgagagaggggggagtgtagtgctcgagtgagtgattcggaggcggtgctgcagctgcggcggcgttcggagatgaggcattgttggggcggtgcttcctccgtcctccggctcctcctcgcgttgcagtgcggggtggtggtggtggtgttgcagtgctcggcgaatgcgttgggcagtgacggtgagtgttgtcgcttgcgcggttgcgccgtgtatgtgtgttcttccactgacttggtgtttttctttcctgttttttttggtcggattttagggagttttgtttgaattcgtggtgttttttctaattatgcactgcctgtgaattccatttctgggagacgttttacgggttttttttttacatttttttaccgagtttgaaatggctgttcagatttttggttctgatctatcttcttcgaaatttccacctgttactcggtggaggcgatgcaaatttcgagatttatccgcgaaatttcgtgcctaaaactcgaattccacctccatttctatggtgcatttctgatctgtgaccaacggttttgctgtgtctcgtacactctcgttctgttcctccatgagaaatgtggcgttctgctcacacgcgctttgctacgccttgtgctagtctcggcgctcatcgcgttcaagcgcgcaatcatcgaggacccccggtcggcgctcgcggactggagcgatgcggacgggaacgcctgcgactggcacggggtgatctgctcctcgccgcagggctccgtgatctccctgtaagaaaccccccccccccccttgcacctgcactcagctagatctcactaatgtttcacctactgctttactagttactactgtggtacttactagccggtaatatcaaatcctgttcaacattactgtgtacataaagtggggagggaaaagagtttgttatggtgatttattaatgtttacattagcaggtactacaattttgtaggtgaagacttgtttgatactataagcactgccactagcttatcgttggagctgtacaatgctgtatatgtttgacatagacgcatattgcatgtgcaaacagctggaaataatggagtatgatgtgccatttagatatgtagtcagtagattttgtttgcaatgaaacgccaactaaaacccgtacttgcgtgatcagtcaaaatccttctgggatggaatttcttctcatgtgtcatgactcgatgattccgcaccttgcaggaagctgtcaaactcgtcgctgaagggatttatcgcgcctgaacttggacagctgagcttcttgcaagagctgtatgttctgttttattgttttttcaactggttatgatgaattagcttcaaggtttctgaaggtctcctttttgggcaggtatttggatcgcaacatgctttttgggacaattccgaaacagctaggttcactgaggaaccttagggtcttggatttgggtgttaataggcttactggtcctatacctcctgagctggctggattgagcagcgtaagcgtaatgtaagatgccaattgatttgcttatatattcagggttttcctgtctctggtgcttctttgctattgaaactaaggctgctttcattcatctgctgtagaaactttcattccaatgggttgactgggaatataccttcagagctgggcaagctacagaatcttgttcagctgaggttggacagaaatagactgaaaggatcaattcctggaagcaatggttctggtttttctcctacggccaatagtgggttggtgacttctccttactccatttttatttgatgatcaagactgtagatgcattttctatatatattaaaccataaaaatgtcacttaattcccttcaggttcctgtgctcttgtattctatgtctatatttctggatatccatgccatagtcaaaccattttattcatgaactgaacaccgcagctatgatatcatggcgattgtatttgtgtgtccctcttaaaaaacattcgttcttacatactagttaatttggcagtaaattttggtgacagtaaaaaggataagactaggtatcaagtggtggttacttaaggccccatcgtttggctttttccctaataagccaaaacggaataaaattaaatttgtaggtaaaacttttatatgtgtgttcttggtgacttaaaagccaatgctgAaaaaaaaaactacgttgaaaataactcaaaatcaatctcaaaattaagtttgaaaatttaaaatttggctttttctttggcttattaggccatccgatgggagccttagtaactttgtgcatgcagcttctttattatattctctcttgatgacatctggcagtgagcctgcaaaaaacttatatttgaccatgttttattatctttttgttaattatctgaatcgattttattttactccaccagatccacggctcacaatgggctatgcccttctcctcgattaaatgttggagatttctcatacaactttcttgttggaaaaatcccaccgtgcttgaagtatcttccaaggtagtaccatacagtgtgtttgctactgctttaaggtccatccatttacatggcttgtctgcaggtcaagtttccaagggaactgcttacaggatgagtactctgtccggcagcgggctttccaaatttgtataagtatgtatttttccttctagcattaacaggattacgcccccctccccccacccaccaaaaaaaaaacattaacaggattacttcagcatgcattaaagtgatatccttctattggaatttcacgatgtacctgcaagtggtgttgtgattgatatcctacaggcctacacttgcaaaatttatccgtgtcatgataagcagaagtatccccttttatctgcattcagtatagccctctacctttacagtttcactgctttatttagcaatcaatagaaggccaagatagcccacttgatctttgcatggtcaacatgataagacaattgatgtgcttcatttttccgtctttatttttttaaaaaaaaagtgacaaaacttaaagcaaagaggccaatattgaatttaagctaaactttaagcaattcctgatgtggggacctgacgcaaaacaccacactgaaattttgcacaccaattaaattgattgcatttctttactatttgagtattgttgggtaactagtcgataacaccatgtactgatattggctgaatccactcattttgtcttaggtggttctccggctggccagcgaggtggcgtaaagggattcaagcatcccacctctgaccataaacatgaaagatcaccacaaccaacatggcttctcattttagaaatttcaactggtattcttctgcttgtatttgtgatcactggtgcaattactgcttccagaagttgcaagctaaagccatcgataagaatatcctcgtggaacagatcaaaaagttggagtgatgagataacagtgctgatcggttagtgctgttatcggttaattaattgatatgatttgaatagtgctgttaatatcttaatgctctcaccagattctgatatgctgaaaagcctgccaaagttaagtcgccaagagcttgaagtagcttgtgaggattttagcaacattattggttcatctcctgagacagtagtgtacaaaggaaccatgaaggatggacctgaggtttctgtcatatcattatgtgcctttgaaggtcattggactagccaacatgaactattttaccaaaacaaggtaaagcttagcaaaattctgctgtgagaacagtatgttgtcccacaatattaatgggtgtaaattttaggttattgacctggcaaggttgaatcatgagaacatagcaaaatttctgggctattgcagagaaagtgacccattctccaggatgctagtgtttgaatacgcatcaaacgggaccctgtttgagcacctacactgtaagccagcctctttattttctgacgattatgtgatgcttagttattgcatattgcatgtgttatgtgcagcaggtttgcttatttgatttttatggggttccttcagatggagaaggagctcagttatcttggctcagacgaatgaaaatagccattggcatcgcgcagggtctaagatacctgcataccgagttgcagcctccatttgctatctctgagctgaattccaactctgtatatgttactgaagattttactccaaaggtaaggtgcacgttatttttggttcttcagagatagcctttccttgtctgttcatccctatccttagagtgcaatactctccaacctggtgaaacaaacacaattgttttccatttttgttttcagctggttgattttgagtgctggaaaatgatgttcaccaaacaaaaacatgagaaggctcctggccgcatcaataacaaatcctctttccctggccacttggattcttcagaggacaaacaagcagacatccaaggcaatacatttgcttttggagtgattttgctggagatcatcagtggacggcttccttattgcaaggacaaaggctatttgattgactgggtgaggcattctactctttctctatctcattgtgacaaagaagtaaatattttagaaattgactctgaagtctgctcaagaggaccagagcctagttccaccatgaacttaaaatgacttaaacaaaacatatagttcagaaaatacaggagcatgcagtttggaatattagttgcattgaacatttgcactgcttattctgaatatgcattctctacattgttcaggccatcaagtatctgcagcagacagaggagatcggtaagcttgtcgatcctgagctgaccaatgtcagaacagaggatctcatggtgatctgcagcgtagtgagccgctgcatcgaccctgatccatccaagagaccatcgatgcagatcatcacaggagttctggagaacgggatcgacttgtcggcagccgccatcctgaaggaatcctctctagcatgggctgagctcgccctggcgttgtagcataccattcttaccgctgtaaattcgtccgtcacatcacacactaatatttatctgatcatggccattgcatgctcggaatatagaggagctgagacgcacgagcaggcaggcactagttcagtttggtcgtgatactgtattgactgtttttgactcataatgctgtatgatttacagttgattgccggtattgcacagcaggtgtttcttcaatgcctcaccggtctaacgaaattcct
More
|
||||||||||
| CDS seq | atgaggcattgttggggcggtgcttcctccgtcctccggctcctcctcgcgttgcagtgcggggtggtggtggtggtgttgcagtgctcggcgaatgcgttgggcagtgacgtctcggcgctcatcgcgttcaagcgcgcaatcatcgaggacccccggtcggcgctcgcggactggagcgatgcggacgggaacgcctgcgactggcacggggtgatctgctcctcgccgcagggctccgtgatctccctgaagctgtcaaactcgtcgctgaagggatttatcgcgcctgaacttggacagctgagcttcttgcaagagctgtatttggatcgcaacatgctttttgggacaattccgaaacagctaggttcactgaggaaccttagggtcttggatttgggtgttaataggcttactggtcctatacctcctgagctggctggattgagcagcgtaagcgtaataaactttcattccaatgggttgactgggaatataccttcagagctgggcaagctacagaatcttgttcagctgaggttggacagaaatagactgaaaggatcaattcctggaagcaatggttctggtttttctcctacggccaatagtggatccacggctcacaatgggctatgcccttctcctcgattaaatgttggagatttctcatacaactttcttgttggaaaaatcccaccgtgcttgaagtatcttccaaggtcaagtttccaagggaactgcttacaggatgagtactctgtccggcagcgggctttccaaatttgtataagtggttctccggctggccagcgaggtggcgtaaagggattcaagcatcccacctctgaccataaacatgaaagatcaccacaaccaacatggcttctcattttagaaatttcaactggtattcttctgcttgtatttgtgatcactggtgcaattactgcttccagaagttgcaagctaaagccatcgataagaatatcctcgtggaacagatcaaaaagttggagtgatgagataacagtgctgatcgattctgatatgctgaaaagcctgccaaagttaagtcgccaagagcttgaagtagcttgtgaggattttagcaacattattggttcatctcctgagacagtagtgtacaaaggaaccatgaaggatggacctgaggtttctgtcatatcattatgtgcctttgaaggtcattggactagccaacatgaactattttaccaaaacaaggttattgacctggcaaggttgaatcatgagaacatagcaaaatttctgggctattgcagagaaagtgacccattctccaggatgctagtgtttgaatacgcatcaaacgggaccctgtttgagcacctacactatggagaaggagctcagttatcttggctcagacgaatgaaaatagccattggcatcgcgcagggtctaagatacctgcataccgagttgcagcctccatttgctatctctgagctgaattccaactctgtatatgttactgaagattttactccaaagctggttgattttgagtgctggaaaatgatgttcaccaaacaaaaacatgagaaggctcctggccgcatcaataacaaatcctctttccctggccacttggattcttcagaggacaaacaagcagacatccaaggcaatacatttgcttttggagtgattttgctggagatcatcagtggacggcttccttattgcaaggacaaaggctatttgattgactgggccatcaagtatctgcagcagacagaggagatcggtaagcttgtcgatcctgagctgaccaatgtcagaacagaggatctcatggtgatctgcagcgtagtgagccgctgcatcgaccctgatccatccaagagaccatcgatgcagatcatcacaggagttctggagaacgggatcgacttgtcggcagccgccatcctgaaggaatcctctctagcatgggctgagctcgccctggcgttgtag
More
|
||||||||||
| Protein seq | MRHCWGGASSVLRLLLALQCGVVVVVLQCSANALGSDVSALIAFKRAIIEDPRSALADWSDADGNACDWHGVICSSPQGSVISLKLSNSSLKGFIAPELGQLSFLQELYLDRNMLFGTIPKQLGSLRNLRVLDLGVNRLTGPIPPELAGLSSVSVINFHSNGLTGNIPSELGKLQNLVQLRLDRNRLKGSIPGSNGSGFSPTANSGSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDEYSVRQRAFQICISGSPAGQRGGVKGFKHPTSDHKHERSPQPTWLLILEISTGILLLVFVITGAITASRSCKLKPSIRISSWNRSKSWSDEITVLIDSDMLKSLPKLSRQELEVACEDFSNIIGSSPETVVYKGTMKDGPEVSVISLCAFEGHWTSQHELFYQNKVIDLARLNHENIAKFLGYCRESDPFSRMLVFEYASNGTLFEHLHYGEGAQLSWLRRMKIAIGIAQGLRYLHTELQPPFAISELNSNSVYVTEDFTPKLVDFECWKMMFTKQKHEKAPGRINNKSSFPGHLDSSEDKQADIQGNTFAFGVILLEIISGRLPYCKDKGYLIDWAIKYLQQTEEIGKLVDPELTNVRTEDLMVICSVVSRCIDPDPSKRPSMQIITGVLENGIDLSAAAILKESSLAWAELALAL |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g63430 [UniProtKB/Swiss-Prot:C0LGH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0031710 | OsARC_04g0031710.01 | Chr04 | 33679129 | 33684759 | + | NAM | ||
| CDS seq | atgaggcattgttggggcggtgcttcctccgtcctccggctcctcctcgcgttgcagtgcggggtggtggtggtggtgttgcagtgctcggcgaatgcgttgggcagtgacgtctcggcgctcatcgcgttcaagcgcgcaatcatcgaggacccccggtcggcgctcgcggactggagcgatgcggacgggaacgcctgcgactggcacggggtgatctgctcctcgccgcagggctccgtgatctccctgaagctgtcaaactcgtcgctgaagggatttatcgcgcctgaacttggacagctgagcttcttgcaagagctgtatttggatcgcaacatgctttttgggacaattccgaaacagctaggttcactgaggaaccttagggtcttggatttgggtgttaataggcttactggtcctatacctcctgagctggctggattgagcagcgtaagcgtaataaactttcattccaatgggttgactgggaatataccttcagagctgggcaagctacagaatcttgttcagctgaggttggacagaaatagactgaaaggatcaattcctggaagcaatggttctggtttttctcctacggccaatagtggatccacggctcacaatgggctatgcccttctcctcgattaaatgttggagatttctcatacaactttcttgttggaaaaatcccaccgtgcttgaagtatcttccaaggtcaagtttccaagggaactgcttacaggatgagtactctgtccggcagcgggctttccaaatttgtataagtggttctccggctggccagcgaggtggcgtaaagggattcaagcatcccacctctgaccataaacatgaaagatcaccacaaccaacatggcttctcattttagaaatttcaactggtattcttctgcttgtatttgtgatcactggtgcaattactgcttccagaagttgcaagctaaagccatcgataagaatatcctcgtggaacagatcaaaaagttggagtgatgagataacagtgctgatcgattctgatatgctgaaaagcctgccaaagttaagtcgccaagagcttgaagtagcttgtgaggattttagcaacattattggttcatctcctgagacagtagtgtacaaaggaaccatgaaggatggacctgaggtttctgtcatatcattatgtgcctttgaaggtcattggactagccaacatgaactattttaccaaaacaaggttattgacctggcaaggttgaatcatgagaacatagcaaaatttctgggctattgcagagaaagtgacccattctccaggatgctagtgtttgaatacgcatcaaacgggaccctgtttgagcacctacactatggagaaggagctcagttatcttggctcagacgaatgaaaatagccattggcatcgcgcagggtctaagatacctgcataccgagttgcagcctccatttgctatctctgagctgaattccaactctgtatatgttactgaagattttactccaaagctggttgattttgagtgctggaaaatgatgttcaccaaacaaaaacatgagaaggctcctggccgcatcaataacaaatcctctttccctggccacttggattcttcagaggacaaacaagcagacatccaaggcaatacatttgcttttggagtgattttgctggagatcatcagtggacggcttccttattgcaaggacaaaggctatttgattgactgggccatcaagtatctgcagcagacagaggagatcggtaagcttgtcgatcctgagctgaccaatgtcagaacagaggatctcatggtgatctgcagcgtagtgagccgctgcatcgaccctgatccatccaagagaccatcgatgcagatcatcacaggagttctggagaacgggatcgacttgtcggcagccgccatcctgaaggaatcctctctagcatgggctgagctcgccctggcgttgtag
More
|
|||||||
| Protein seq | MRHCWGGASSVLRLLLALQCGVVVVVLQCSANALGSDVSALIAFKRAIIEDPRSALADWSDADGNACDWHGVICSSPQGSVISLKLSNSSLKGFIAPELGQLSFLQELYLDRNMLFGTIPKQLGSLRNLRVLDLGVNRLTGPIPPELAGLSSVSVINFHSNGLTGNIPSELGKLQNLVQLRLDRNRLKGSIPGSNGSGFSPTANSGSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDEYSVRQRAFQICISGSPAGQRGGVKGFKHPTSDHKHERSPQPTWLLILEISTGILLLVFVITGAITASRSCKLKPSIRISSWNRSKSWSDEITVLIDSDMLKSLPKLSRQELEVACEDFSNIIGSSPETVVYKGTMKDGPEVSVISLCAFEGHWTSQHELFYQNKVIDLARLNHENIAKFLGYCRESDPFSRMLVFEYASNGTLFEHLHYGEGAQLSWLRRMKIAIGIAQGLRYLHTELQPPFAISELNSNSVYVTEDFTPKLVDFECWKMMFTKQKHEKAPGRINNKSSFPGHLDSSEDKQADIQGNTFAFGVILLEIISGRLPYCKDKGYLIDWAIKYLQQTEEIGKLVDPELTNVRTEDLMVICSVVSRCIDPDPSKRPSMQIITGVLENGIDLSAAAILKESSLAWAELALAL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.026208 | 0.414858 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0683600 | RBH | 0.000000 | 0.096595 | 3.104716 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58700 | RBH | 0.000000 | 0.061014 | 0.716557 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0683600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031520 | RBH | 0.0 | 5.955733 | 9.104932 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032310 | RBH | 0.000000 | 3.623414 | 2.782776 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031870 | RBH | 0.0 | 12.325933 | 10.928922 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031990 | RBH | 0.399708 | 25.346012 | 12.585129 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0552100 | RBH | 11.040466 | 11.1740255 | 19.0248635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030610 | RBH | 0.000000 | 0.544413 | 1.315725 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0557900 | RBH | 9.318303 | 3.155784 | 37.2040575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031100 | RBH | 0.031160 | 0.203941 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030880 | RBH | 0.156098 | 11.425035 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031020 | RBH | 0.000000 | 17.034983 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031570 | RBH | 0.000000 | 1.204672 | 0.616711 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031580 | RBH | 0.0 | 9.388827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031070 | RBH | 0.231606 | 2.668439 | 7.776631 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030790 | RBH | 4.294367 | 18.409777 | 19.285507 |
