Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0018700 | OGI:04075460 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:23637423-23638521 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGGGAAACGGCTCCACTGCAGCCGTGCGGAAAGCCGCGCGCTGCCGTCCGATGTGGGATGGACGGTTAGCATTGACCTTGGGTGTCTAGATGGATGCCTGAATAAGCTTTGGGCTACCCAGCCAAACAGCCCAAAGTGTTCGGGCCGCATTTGGTGATTTGGAGCAAAAGCAAGGGGAATTATATCCGGAGGAAAAAGTACACCCAAGGTCCCTCAATTTGTCATCGAGATACAAAATCATCCTCAAACCACAAAACCAGATATCTCGCGTCCCTTAACTTAATCAAAACCAGTCATAAAAGATCTTTAGACGGTTTTGACCCGGTTTTAGCCTACGTGACGGCTAAGTCAGCGTGGGACCCACGTAGCCCACATGTCTTTCCCCTCCTTTTCACTCCACGTCATCATCTCTTTTCCCTCCTTTCACTTCCTCCTCTCTCTCTCTCTCTCAATTTTCTCCTCTCACAGGCTGACCGGTGGGTCGGGACGAGGTCGACGGGGCAAGCAGGGAGAGGGGAAGGTGCGGCGGCTGGCGACAGGCGACGCGGGAGCAGGCCGCCGCACCGGGTGGGGAGGAGGCTGGCGGAGTAGAGGCCGCAGGCGTGGAGCCGTGGAGTAGGGCGTCAGTGGCCGGTGACGGCGGAGGAGCGGCGACGGCATGGATAGTACCGACGGGAGGGGCCCCGAGCAGTCGGACGGGGCGGCCGTGCCGCTGCGGCGGTTTCTGATGAGCACCGGGCTTGACGCAGATATGAGAAGGGGGAGGGAGGGCGACGCGGCGTCCGTGGCGGTCGTCGAGGAGGGCGTCGGGGGAGGAGGCGGCGGGAGGAAGGTGTGCAACGGCGGCGGCGACGGCCGCCGCGACGCCAATGCGTACTACCGGCGGATGATCCAAGCCGACCCGGCGAACCCGCTGCTGCTCGGCAACTACGCGAGGTTCCTCAAGGAGGTGGAGGGAGACGCGGCGAGGGCGCAGGAGTACTGGGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTCGCGCTCTACGCGGGCCTCGTCTGGGAGACCACCCGCGACGCCGACCGCGCCGACGCCTACTTCACCTGA
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| CDS seq | ATGGGGGAAACGGCTCCACTGCAGCCGTGCGGAAAGCCGCGCGCTGCCGTCCGATGTGGGATGGACGACGCGGCGAGGGCGCAGGAGTACTGGGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTCGCGCTCTACGCGGGCCTCGTCTGGGAGACCACCCGCGACGCCGACCGCGCCGACGCCTACTTCACCTGA |
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| Protein seq | MGETAPLQPCGKPRAAVRCGMDDAARAQEYWERAIVANPGDGDALALYAGLVWETTRDADRADAYFT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0018700 | OsARC_04g0018700.01 | Chr04 | 23637423 | 23638521 | + | NAM | ||
| CDS seq | ATGGGGGAAACGGCTCCACTGCAGCCGTGCGGAAAGCCGCGCGCTGCCGTCCGATGTGGGATGGACGACGCGGCGAGGGCGCAGGAGTACTGGGAGCGCGCCATCGTCGCCAACCCCGGCGACGGCGACGCCCTCGCGCTCTACGCGGGCCTCGTCTGGGAGACCACCCGCGACGCCGACCGCGCCGACGCCTACTTCACCTGA
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| Protein seq | MGETAPLQPCGKPRAAVRCGMDDAARAQEYWERAIVANPGDGDALALYAGLVWETTRDADRADAYFT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0496700 | RBH | 0.148629 | 0.311025 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41930 | RBH | 0.094669 | 0.193117 | 0.025665 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0496700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018500 | RBH | 0.000000 | 0.0 | 2.298030 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019280 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018990 | RBH | 0.000000 | 3.038277 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018950 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0388400 | RBH | 0.9915115 | 3.6084 | 1.3463065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017730 | RBH | 0.295309 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0388500 | RBH | 0.841082 | 1.704653 | 1.2827955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018230 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018080 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018580 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018730 | RBH | 0.487268 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018000 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017960 | RBH | 0.0 | 0.0 | 0.0 |
