Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0018630 | OGI:04075310 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:23589168-23595152 | ||||||||
| Gene Symbol | NLP2, OsNLP2, OsNIN-like2 | ||||||||||
| DNA seq | GAATTTCTGAGCCAAGGAATCTCCTCCTCTTCTCTCTCCTTCGTGCTTCTCCAGTCTCCACCTCCCTGGGCGCTGTTGCCCCTTCCAAATCTGCGCCAACTGCGCCACCGTATCCCGGTTTTTTTTCCCCCGCTTCTTGTCGCTGCGCCCAATCAGGAGGCGAGGCTGCTGGCCTCGTTTCCTCCGCGCGAGGGTTGGGGCTTTCCGCGCCGCGACCAAGAAACGGTTCCCGGAGCAGGAGCTTGGAGGCTTCCGCGTGGTCTGGTGATTGAGCTCGGGACGACGGGAGGTGTAGTTCTGCGCGTCATTGCCGGGCTCAAGGTTGGATACTTGGATTTGGTGCGGATGTTCCTGTTTGCTACTGGTTTTGGGGACTTTTGAGGTGGGTGGTGGCGTCAGATTTGATCGCCTTTGGTGCGTTTCTCTGGATCATTTGTTTTGAAATTCGCTCTTGATGCTTTAAGCCGCTACCTTTCCTGACCTTTCACTCCAAAGGTTTGACCTTTTGAGTTCCTGTGCTGATTGTTCAACAGGTGATCGATCCACCAGTCCTGGGGAGTAGGCCTAATCCCTCTATGAACAATACGATCGGAAAAGCAGTCTCCTGTTCAGATGCTGCCCATTAAACTAGTCCCAGTGTTGTACAAAGATTCTGTCTTTTGGCAGAATACAGTGATCCCCTCTGCTTCTTGTCCAGGGCAGAATACAGTTGCTCCAACTCGATGTTGGTATTGTAGGAGTGGATAAGTCGTAAGGATCTTTAAACTGCACGAGTGGAGCAAAGCCATGGATATGCCTACGCCATCCAACCGTGCTGGCTGCAATGGCAACACCGGCGGTACTATGGGCCCTTCAGATGATCCTTATGGTGCAGCAGCCATGAACCTTGATTGTTACTCGGAGATTTACAGCCCTTCGGTGGCCGACCAACTATTCTCGCTGCTAAATGATCCAGCTGCACACCGGATGTTTGCTATGTGGCCATCCATGGGATCATCGCCGTGTGCTGCTGGTACGAGTGAAGATATGCCGCTCGATGCATATTCTGGCCTAGGGGAGGCAGTGGAAGAACCTTCTCAAATAATGTCAGTGAATCCAACTGAAGCAGAGAAAACGGGCAAGAGTTCAGGCGAGCTTGGTTCGGACGATGGTGCCCATCAAGGGAGTAGCATGGTTCCAAGGTCTGTTGTGGGCAGTTCACTTGCTGACAGGATGCTCATGGCTTTGTCCTTGTTCAGGGAATCATTGGGCAGCGGTGCTCTTGCCCAAGTCTGGATGCCTGTTGAGCAGGAGGGTCATGTTGTGCTGAGTACATGTGAGCAACCTTTTCTACTCGACCAGGTTCTTGCAGGGTATCGAGAAGTATCCAGGCACTTTGTGTTTTCAGCGAAGGAGGAGCCTGGTCTACAGCCAGGGCTTCCAGGGAGGGTCTTCATCTCTGGGGTGCCAGAATGGACCTCAAGTGTCCTCTACTATAATAGGCCAGAGTATTTGAGGATGGAGCATGCTCTCCATCACGAGATACGTGGGTCACTTGCAATGCCAATTTATGACCCCAGCAAGGATTCTTGCTGTGCAGTGTTTGAGCTTGTTACAAGAAAGGAGAAGCCTGATTTCAGTGCAGAGATGGACAACGTTTGCAATGCCTTGCAGGCAAGTTCTAACTTGATGATGTTATACCATGAAATTATCACTTTCAAAACTTAAATAGGCGAATTTTGAGTACAAGTGATGGATACTATTGCTAATGCTATCCCATCTATACTTATGGCTGGATTCTGTAGTGCGTCATATGTCATCATTTGTTAGCAACTTCTATAAACACTGTGGTAAAGTACATATACTAGATATGCATCCGATTCCTTGTTTCATTTGTGGATGCCATGAAGAAAAGAGTACACTGAAAGTTAGATGCAAGTTTTCCAATTCCTATGGAACCATACAGAGTGTTCTTTTAGCAAACATATCCAGTATGTAGTTCTAAGCAGCGTATTGCATACTAACGAATTCCTTGAAATCAATTATTGGCATTCTCAAAACGTTTTGAGGACCTTTTTTTATACATATATTGGTACTAAATCCTTAGGATTTTAACTACCACAAAAATTCCCCAAATCCAAATAAGCAAATACCCCCTTGTGTAGTTTCCACCACAGTAGTTTCAGTACCCTTTATATAACACTGATTTAAATATAGTGTAATTCACCATTTGGTAATATGAAGTAGTTTCATTATCCTTTATTAGATTGATTTATTCTAGCAATCACTATCCATTTGCTAATATATCATCCGGTGTTGTCAGAAAAAAAATCCTATCCTTCCCTTAATTCCTTTGCGTACTACATAATAATTCACTGAGTTGATAATAATAATGTGAAGTTGTGGGTTCATTTCCGTTCTTATCAATGGTAAACTCTGGATATTATTTTGTTTTATGGTCTAATATTTCACTTGGTACTTTCATTTGATACTAAACACATTACTTTTCTGCAGGCAGTGAACTTGAAGGCTACAAAAGGTTCTAGCAATCAGAAGGTACCATCTTCACCTTTTGAGTTCTGAACGGTTATATTGTGATAATTTCTCTTGCACCCCATGGAAAAATGTAAGTTCTCATTTTATTGTGTTATCTATTGACGTTTGATGAATGTACCATTTGTTTGTTTGCAGTTTTATACAGAGAACCAGAAATTTGCCTTCACTGAGATTTTAGATGTTCTCAGAGCTATTTGCCATGCACATATGCTTCCACTGGCCCTTACATGGGTTCCTACATCAAATGGTATTGATGGTGGTTATGTTGTTGGAAAGGATGGTGCCAGTTTTTCACAATCAGGGAAAACAATAATACGCATCCATGAATCTGCATGTTATGTTAACGATGGAAAGATGCAAGGTTTTCTTCAAGCATGTGCCAGACGTCATCTTGAGAAAGGGCAAGGCATTGCAGGACGAGCACTCAAATCTAATTTGCCATTTTTCTCGCCTGATATAAGAGAGTACAGTATTGAGGATTACCCTCTTGCACACCATGCACGTAAGTTTAGTCTGCATGCTGCTGTTGCCATTCGTCTAAGGAGCACATACACTGGCAATGATGACTACATACTAGAATTCTTTCTCCCGGTCAGCTGCAAAGGCAGTGGAGAACAACAGATGTTGCTGAATAACCTCTCCAGTACAATGCAAAGAATATGCAAAAGTCTGCGAACAGTTTATGAAGCAGAAGTTGATAATGTTAATGCTGGTACTGCAGCTGTGTTCAGGAAAAACAATGAGAGTTGCTTGCCAACTGGACACACAGAAAGTTCTTCACATGGTGATCAATCAATCACAGGAGCTTCATTCGAGGATACATCTTTAGCTAACAAGCCAGGAGTCATGGAACCTGAGTTGGCTGAGCAGGTGCTCTACTAACTTTAACTAAATATGTCATGCTATGCACCTGATTTAGTAAGAAGCTGAGTGACATAACTTGAATATAAACTCCTTTTTAGTGTGTTCGGGTCAAAATTTTCAGCAGTAAACATGAGCAATCAAAATGAACTTGACCAAACTGAACCTTTTTAAAAGTTTCTTCTGTAGAGATATGTAGTTCTGTAAATATCTAGAATAATTGTGTCTTAGTAGTCATAGCCATTGCTGAAAATTCAATTGGATTATGTATCTTTGACTCTTGCCTATTGAATAATGTCATCAAAATCACCTTTATTAATGAGATGTGAGATTTTTATATATACCTTTCAGTTTTATTAGAGGAAAAGGTGTCCAATGGTAGTAAGCTAGTAGCAAAGTTCATTTGAACATGCTAGTAGCAACCCACCATAGTCATACTGGGATGGGTTAAATCCACAAAATCCATACTCAACATTAATACATAAATGTAATCAAGTTGATAATAAAAAGTCTAGAGTAACTTTCACAAAATCCCAGGTTTTGAAGTACCCATAACATAAAACCCCAGGTATTACGATTTGTTTCGAAGAACCCGAAGTTTTGGGGCAAAATGTTTCAAGAAACCCCATGTTAAAGCTTATATCATTGTTTTTGCTAATATATTTATGCATAATAATTGAAAAATTATAATATGAGATATTCCTGAGTATATATACATGTTAGCCTCATTTTAACAAGCATTGGTTATTGGTAGTATGATTATTTAAATGTATAGGTATCTGATTAATGTGTCAGTATTAATGAGATAATTTTGTGTTTTTTTAATCATGCAATGTAAGAGTAAGGAAGAAGATAAAATACATGCGAGGGATATGTATTTTGAGCCTACTAATGTGAACATATACCAAAAATATGATATATAATAATGAAATTATGAGTATTTGCCATAAACATGGGGTTTTGCTTTACATGTGCCTCAAAACCTGGGGTTTTGTGAAATTTACTCTAGAATCTAGAATGTGTGTATCCACTTGTTGACTGATCTCCTTCTGCGCTGCAGGTACAGCCTAGTTCCATAGGACATGCAGAGAAAAAGCGCAGTACAGCTGAGAAGAATATTAGCTTGGATGTTCTTCGTAAGTACTTCTCTGGGAGCCTAAAGGATGCTGCAAAGAGCCTTGGTGGTGAGCCTCTAGTGTCTTTTTGTAAAATGAACTTAACAAACCTTTACTGTGTTATTTGATCTACTTTATGTAAATAGGGTATAATTAAATGGTTGACTTTCTGCTGATGCCTTCTTTTAATATTGGGTGCAGTTTGTCCAACAACTTTGAAACGGATATGCCGGCATCATGGAATTTCACGATGGCCATCTCGCAAGATAAACAAGGTTAATCGTTCATTAAAGAAGATTCAAACTGTCATAAACTCTGTTCATGGTGTGGACAGATCCTTGCAATATGATCCTGCTACTGGATCTCTTGTTCCAGTAGTTTCTCTGCCAGAAAAGTTGACATTCCCTTCTTGCGATGGTTTGCCAACTCCATCAGTCGGAAAAACTGTGGAAGAGAATTCTGACCTAAAATCTGAAGAAGGGTGTTCTTTGCCTGATGGATCGCAAAGACAAAGTTGCCAGTTGCAGATCTCTGATGTGAAGAAAAGTAACGAGGATGAATTTCACATTGGCAGTGGTAACAGTGATTTTTATGGTGCAAATGCCACAGCAAAATCTAATTCTGAGGTCACACAAGGTCCATTATGTCCCACTGGTGCTTTTAGTGCTTTGCATCTCAAGGGAACAGATTGCACCAATCCTTCTAGCTCTCTCCGCCCAAGTTCCGAAAGCACCAGAAATCAAATAGTTGGAAGAAACTCACCATCTATACAACAAGAAGATCTTGATATGCTTGACAATCATGAAGCCGAGGACAAGGACCACATGCACCCTTCTACCTCTGGTATGACTGACTCTTCTAGCGGCAGCGCATCAAGCCACCCTACCTTCAAACAGAACACAAGAAGTGCTCTTAAAGATGCAGCCAGTCCTGCACTGACAGTTAAGGCAACCTACAACGGAGACACTGTGCGGTTCAAGTTCTTGCCATCTATGGGTTGGTATCACCTATTGGAAGAAATAGCAAAGAGATTTAAGCTGCCAACCGGAGCATACCAGCTCAAGTACAAGGACGACGAGGATGAATGGGTCATCTTGGCAAACGATTCAGATCTCCAGGAGTGCGTCGATGTTCTCGACTCCATAGGGTCGCGAATCGTGAAACTCCAGGTACGAGATCTCCCTTGCATCGTCAGCAGCTCGGGAAGCAGCACCTGCTTGCAGTTGGCGGCACATAGCTCATAACATGGTAGGGAATCCTGGGCTCCTGTCACCCAACCCTCAACTGTACCATATTACAGTAGGCTAGTCTTTGTTGTAGCAACAGCCAATAGGGTTTGTATTATGTATGCAGTAGGGTATATTATGCAGTTTAGCTAGCATCAACGGTGGAGTCATCATCCCACACAGATCAGATCATATTCTCGCAAGAAACAATGCCATTAAGGTCTTAAGTTTGTTGAACACGAGTACAT
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| CDS seq | ATGGATATGCCTACGCCATCCAACCGTGCTGGCTGCAATGGCAACACCGGCGGTACTATGGGCCCTTCAGATGATCCTTATGGTGCAGCAGCCATGAACCTTGATTGTTACTCGGAGATTTACAGCCCTTCGGTGGCCGACCAACTATTCTCGCTGCTAAATGATCCAGCTGCACACCGGATGTTTGCTATGTGGCCATCCATGGGATCATCGCCGTGTGCTGCTGGTACGAGTGAAGATATGCCGCTCGATGCATATTCTGGCCTAGGGGAGGCAGTGGAAGAACCTTCTCAAATAATGTCAGTGAATCCAACTGAAGCAGAGAAAACGGGCAAGAGTTCAGGCGAGCTTGGTTCGGACGATGGTGCCCATCAAGGGAGTAGCATGGTTCCAAGGTCTGTTGTGGGCAGTTCACTTGCTGACAGGATGCTCATGGCTTTGTCCTTGTTCAGGGAATCATTGGGCAGCGGTGCTCTTGCCCAAGTCTGGATGCCTGTTGAGCAGGAGGGTCATGTTGTGCTGAGTACATGTGAGCAACCTTTTCTACTCGACCAGGTTCTTGCAGGGTATCGAGAAGTATCCAGGCACTTTGTGTTTTCAGCGAAGGAGGAGCCTGGTCTACAGCCAGGGCTTCCAGGGAGGGTCTTCATCTCTGGGGTGCCAGAATGGACCTCAAGTGTCCTCTACTATAATAGGCCAGAGTATTTGAGGATGGAGCATGCTCTCCATCACGAGATACGTGGGTCACTTGCAATGCCAATTTATGACCCCAGCAAGGATTCTTGCTGTGCAGTGTTTGAGCTTGTTACAAGAAAGGAGAAGCCTGATTTCAGTGCAGAGATGGACAACGTTTGCAATGCCTTGCAGGCAGTGAACTTGAAGGCTACAAAAGGTTCTAGCAATCAGAAGTTTTATACAGAGAACCAGAAATTTGCCTTCACTGAGATTTTAGATGTTCTCAGAGCTATTTGCCATGCACATATGCTTCCACTGGCCCTTACATGGGTTCCTACATCAAATGGTATTGATGGTGGTTATGTTGTTGGAAAGGATGGTGCCAGTTTTTCACAATCAGGGAAAACAATAATACGCATCCATGAATCTGCATGTTATGTTAACGATGGAAAGATGCAAGGTTTTCTTCAAGCATGTGCCAGACGTCATCTTGAGAAAGGGCAAGGCATTGCAGGACGAGCACTCAAATCTAATTTGCCATTTTTCTCGCCTGATATAAGAGAGTACAGTATTGAGGATTACCCTCTTGCACACCATGCACGTAAGTTTAGTCTGCATGCTGCTGTTGCCATTCGTCTAAGGAGCACATACACTGGCAATGATGACTACATACTAGAATTCTTTCTCCCGGTCAGCTGCAAAGGCAGTGGAGAACAACAGATGTTGCTGAATAACCTCTCCAGTACAATGCAAAGAATATGCAAAAGTCTGCGAACAGTTTATGAAGCAGAAGTTGATAATGTTAATGCTGGTACTGCAGCTGTGTTCAGGAAAAACAATGAGAGTTGCTTGCCAACTGGACACACAGAAAGTTCTTCACATGGTGATCAATCAATCACAGGAGCTTCATTCGAGGATACATCTTTAGCTAACAAGCCAGGAGTCATGGAACCTGAGTTGGCTGAGCAGCCTAGTTCCATAGGACATGCAGAGAAAAAGCGCAGTACAGCTGAGAAGAATATTAGCTTGGATGTTCTTCGTAAGTACTTCTCTGGGAGCCTAAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCAACAACTTTGAAACGGATATGCCGGCATCATGGAATTTCACGATGGCCATCTCGCAAGATAAACAAGGTTAATCGTTCATTAAAGAAGATTCAAACTGTCATAAACTCTGTTCATGGTGTGGACAGATCCTTGCAATATGATCCTGCTACTGGATCTCTTGTTCCAGTAGTTTCTCTGCCAGAAAAGTTGACATTCCCTTCTTGCGATGGTTTGCCAACTCCATCAGTCGGAAAAACTGTGGAAGAGAATTCTGACCTAAAATCTGAAGAAGGGTGTTCTTTGCCTGATGGATCGCAAAGACAAAGTTGCCAGTTGCAGATCTCTGATGTGAAGAAAAGTAACGAGGATGAATTTCACATTGGCAGTGGTAACAGTGATTTTTATGGTGCAAATGCCACAGCAAAATCTAATTCTGAGGTCACACAAGGTCCATTATGTCCCACTGGTGCTTTTAGTGCTTTGCATCTCAAGGGAACAGATTGCACCAATCCTTCTAGCTCTCTCCGCCCAAGTTCCGAAAGCACCAGAAATCAAATAGTTGGAAGAAACTCACCATCTATACAACAAGAAGATCTTGATATGCTTGACAATCATGAAGCCGAGGACAAGGACCACATGCACCCTTCTACCTCTGGTATGACTGACTCTTCTAGCGGCAGCGCATCAAGCCACCCTACCTTCAAACAGAACACAAGAAGTGCTCTTAAAGATGCAGCCAGTCCTGCACTGACAGTTAAGGCAACCTACAACGGAGACACTGTGCGGTTCAAGTTCTTGCCATCTATGGGTTGGTATCACCTATTGGAAGAAATAGCAAAGAGATTTAAGCTGCCAACCGGAGCATACCAGCTCAAGTACAAGGACGACGAGGATGAATGGGTCATCTTGGCAAACGATTCAGATCTCCAGGAGTGCGTCGATGTTCTCGACTCCATAGGGTCGCGAATCGTGAAACTCCAGGTACGAGATCTCCCTTGCATCGTCAGCAGCTCGGGAAGCAGCACCTGCTTGCAGTTGGCGGCACATAGCTCATAA
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| Protein seq | MDMPTPSNRAGCNGNTGGTMGPSDDPYGAAAMNLDCYSEIYSPSVADQLFSLLNDPAAHRMFAMWPSMGSSPCAAGTSEDMPLDAYSGLGEAVEEPSQIMSVNPTEAEKTGKSSGELGSDDGAHQGSSMVPRSVVGSSLADRMLMALSLFRESLGSGALAQVWMPVEQEGHVVLSTCEQPFLLDQVLAGYREVSRHFVFSAKEEPGLQPGLPGRVFISGVPEWTSSVLYYNRPEYLRMEHALHHEIRGSLAMPIYDPSKDSCCAVFELVTRKEKPDFSAEMDNVCNALQAVNLKATKGSSNQKFYTENQKFAFTEILDVLRAICHAHMLPLALTWVPTSNGIDGGYVVGKDGASFSQSGKTIIRIHESACYVNDGKMQGFLQACARRHLEKGQGIAGRALKSNLPFFSPDIREYSIEDYPLAHHARKFSLHAAVAIRLRSTYTGNDDYILEFFLPVSCKGSGEQQMLLNNLSSTMQRICKSLRTVYEAEVDNVNAGTAAVFRKNNESCLPTGHTESSSHGDQSITGASFEDTSLANKPGVMEPELAEQPSSIGHAEKKRSTAEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVINSVHGVDRSLQYDPATGSLVPVVSLPEKLTFPSCDGLPTPSVGKTVEENSDLKSEEGCSLPDGSQRQSCQLQISDVKKSNEDEFHIGSGNSDFYGANATAKSNSEVTQGPLCPTGAFSALHLKGTDCTNPSSSLRPSSESTRNQIVGRNSPSIQQEDLDMLDNHEAEDKDHMHPSTSGMTDSSSGSASSHPTFKQNTRSALKDAASPALTVKATYNGDTVRFKFLPSMGWYHLLEEIAKRFKLPTGAYQLKYKDDEDEWVILANDSDLQECVDVLDSIGSRIVKLQVRDLPCIVSSSGSSTCLQLAAHSS |
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| Function | Protein NLP2 [UniProtKB/Swiss-Prot:Q0JC27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0018630 | OsARC_04g0018630.01 | Chr04 | 23589168 | 23595152 | + | NAM | ||
| CDS seq | ATGGATATGCCTACGCCATCCAACCGTGCTGGCTGCAATGGCAACACCGGCGGTACTATGGGCCCTTCAGATGATCCTTATGGTGCAGCAGCCATGAACCTTGATTGTTACTCGGAGATTTACAGCCCTTCGGTGGCCGACCAACTATTCTCGCTGCTAAATGATCCAGCTGCACACCGGATGTTTGCTATGTGGCCATCCATGGGATCATCGCCGTGTGCTGCTGGTACGAGTGAAGATATGCCGCTCGATGCATATTCTGGCCTAGGGGAGGCAGTGGAAGAACCTTCTCAAATAATGTCAGTGAATCCAACTGAAGCAGAGAAAACGGGCAAGAGTTCAGGCGAGCTTGGTTCGGACGATGGTGCCCATCAAGGGAGTAGCATGGTTCCAAGGTCTGTTGTGGGCAGTTCACTTGCTGACAGGATGCTCATGGCTTTGTCCTTGTTCAGGGAATCATTGGGCAGCGGTGCTCTTGCCCAAGTCTGGATGCCTGTTGAGCAGGAGGGTCATGTTGTGCTGAGTACATGTGAGCAACCTTTTCTACTCGACCAGGTTCTTGCAGGGTATCGAGAAGTATCCAGGCACTTTGTGTTTTCAGCGAAGGAGGAGCCTGGTCTACAGCCAGGGCTTCCAGGGAGGGTCTTCATCTCTGGGGTGCCAGAATGGACCTCAAGTGTCCTCTACTATAATAGGCCAGAGTATTTGAGGATGGAGCATGCTCTCCATCACGAGATACGTGGGTCACTTGCAATGCCAATTTATGACCCCAGCAAGGATTCTTGCTGTGCAGTGTTTGAGCTTGTTACAAGAAAGGAGAAGCCTGATTTCAGTGCAGAGATGGACAACGTTTGCAATGCCTTGCAGGCAGTGAACTTGAAGGCTACAAAAGGTTCTAGCAATCAGAAGTTTTATACAGAGAACCAGAAATTTGCCTTCACTGAGATTTTAGATGTTCTCAGAGCTATTTGCCATGCACATATGCTTCCACTGGCCCTTACATGGGTTCCTACATCAAATGGTATTGATGGTGGTTATGTTGTTGGAAAGGATGGTGCCAGTTTTTCACAATCAGGGAAAACAATAATACGCATCCATGAATCTGCATGTTATGTTAACGATGGAAAGATGCAAGGTTTTCTTCAAGCATGTGCCAGACGTCATCTTGAGAAAGGGCAAGGCATTGCAGGACGAGCACTCAAATCTAATTTGCCATTTTTCTCGCCTGATATAAGAGAGTACAGTATTGAGGATTACCCTCTTGCACACCATGCACGTAAGTTTAGTCTGCATGCTGCTGTTGCCATTCGTCTAAGGAGCACATACACTGGCAATGATGACTACATACTAGAATTCTTTCTCCCGGTCAGCTGCAAAGGCAGTGGAGAACAACAGATGTTGCTGAATAACCTCTCCAGTACAATGCAAAGAATATGCAAAAGTCTGCGAACAGTTTATGAAGCAGAAGTTGATAATGTTAATGCTGGTACTGCAGCTGTGTTCAGGAAAAACAATGAGAGTTGCTTGCCAACTGGACACACAGAAAGTTCTTCACATGGTGATCAATCAATCACAGGAGCTTCATTCGAGGATACATCTTTAGCTAACAAGCCAGGAGTCATGGAACCTGAGTTGGCTGAGCAGCCTAGTTCCATAGGACATGCAGAGAAAAAGCGCAGTACAGCTGAGAAGAATATTAGCTTGGATGTTCTTCGTAAGTACTTCTCTGGGAGCCTAAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCAACAACTTTGAAACGGATATGCCGGCATCATGGAATTTCACGATGGCCATCTCGCAAGATAAACAAGGTTAATCGTTCATTAAAGAAGATTCAAACTGTCATAAACTCTGTTCATGGTGTGGACAGATCCTTGCAATATGATCCTGCTACTGGATCTCTTGTTCCAGTAGTTTCTCTGCCAGAAAAGTTGACATTCCCTTCTTGCGATGGTTTGCCAACTCCATCAGTCGGAAAAACTGTGGAAGAGAATTCTGACCTAAAATCTGAAGAAGGGTGTTCTTTGCCTGATGGATCGCAAAGACAAAGTTGCCAGTTGCAGATCTCTGATGTGAAGAAAAGTAACGAGGATGAATTTCACATTGGCAGTGGTAACAGTGATTTTTATGGTGCAAATGCCACAGCAAAATCTAATTCTGAGGTCACACAAGGTCCATTATGTCCCACTGGTGCTTTTAGTGCTTTGCATCTCAAGGGAACAGATTGCACCAATCCTTCTAGCTCTCTCCGCCCAAGTTCCGAAAGCACCAGAAATCAAATAGTTGGAAGAAACTCACCATCTATACAACAAGAAGATCTTGATATGCTTGACAATCATGAAGCCGAGGACAAGGACCACATGCACCCTTCTACCTCTGGTATGACTGACTCTTCTAGCGGCAGCGCATCAAGCCACCCTACCTTCAAACAGAACACAAGAAGTGCTCTTAAAGATGCAGCCAGTCCTGCACTGACAGTTAAGGCAACCTACAACGGAGACACTGTGCGGTTCAAGTTCTTGCCATCTATGGGTTGGTATCACCTATTGGAAGAAATAGCAAAGAGATTTAAGCTGCCAACCGGAGCATACCAGCTCAAGTACAAGGACGACGAGGATGAATGGGTCATCTTGGCAAACGATTCAGATCTCCAGGAGTGCGTCGATGTTCTCGACTCCATAGGGTCGCGAATCGTGAAACTCCAGGTACGAGATCTCCCTTGCATCGTCAGCAGCTCGGGAAGCAGCACCTGCTTGCAGTTGGCGGCACATAGCTCATAA
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| Protein seq | MDMPTPSNRAGCNGNTGGTMGPSDDPYGAAAMNLDCYSEIYSPSVADQLFSLLNDPAAHRMFAMWPSMGSSPCAAGTSEDMPLDAYSGLGEAVEEPSQIMSVNPTEAEKTGKSSGELGSDDGAHQGSSMVPRSVVGSSLADRMLMALSLFRESLGSGALAQVWMPVEQEGHVVLSTCEQPFLLDQVLAGYREVSRHFVFSAKEEPGLQPGLPGRVFISGVPEWTSSVLYYNRPEYLRMEHALHHEIRGSLAMPIYDPSKDSCCAVFELVTRKEKPDFSAEMDNVCNALQAVNLKATKGSSNQKFYTENQKFAFTEILDVLRAICHAHMLPLALTWVPTSNGIDGGYVVGKDGASFSQSGKTIIRIHESACYVNDGKMQGFLQACARRHLEKGQGIAGRALKSNLPFFSPDIREYSIEDYPLAHHARKFSLHAAVAIRLRSTYTGNDDYILEFFLPVSCKGSGEQQMLLNNLSSTMQRICKSLRTVYEAEVDNVNAGTAAVFRKNNESCLPTGHTESSSHGDQSITGASFEDTSLANKPGVMEPELAEQPSSIGHAEKKRSTAEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVINSVHGVDRSLQYDPATGSLVPVVSLPEKLTFPSCDGLPTPSVGKTVEENSDLKSEEGCSLPDGSQRQSCQLQISDVKKSNEDEFHIGSGNSDFYGANATAKSNSEVTQGPLCPTGAFSALHLKGTDCTNPSSSLRPSSESTRNQIVGRNSPSIQQEDLDMLDNHEAEDKDHMHPSTSGMTDSSSGSASSHPTFKQNTRSALKDAASPALTVKATYNGDTVRFKFLPSMGWYHLLEEIAKRFKLPTGAYQLKYKDDEDEWVILANDSDLQECVDVLDSIGSRIVKLQVRDLPCIVSSSGSSTCLQLAAHSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0018630 | OsARC_04g0018630.02 | Chr04 | 23589170 | 23595139 | + | IsoSeq | ||
| CDS seq | TTTCTGAGCCAAGGAATCTCCTCCTCTTCTCTCTCCTTCGTGCTTCTCCAGTCTCCACCTCCCTGGGCGCTGTTGCCCCTTCCAAATCTGCGCCAACTGCGCCACCGTATCCCGGTTTTTTTTCCCCCGCTTCTTGTCGCTGCGCCCAATCAGGAGGCGAGGCTGCTGGCCTCGTTTCCTCCGCGCGAGGGTTGGGGCTTTCCGCGCCGCGACCAAGAAACGGTTCCCGGAGCAGGAGCTTGGAGGCTTCCGCGTGGTCTGGTGATTGAGCTCGGGACGACGGGAGGTGTAGTTCTGCGCGTCATTGCCGGGCTCAAGGTTGGATACTTGGATTTGGTGCGGATGTTCCTGTTTGCTACTGGTTTTGGGGAC
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| Protein seq | FLSQGISSSSLSFVLLQSPPPWALLPLPNLRQLRHRIPVFFPPLLVAAPNQEARLLASFPPREGWGFPRRDQETVPGAGAWRLPRGLVIELGTTGGVVLRVIAGLKVGYLDLVRMFLFATGFGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 23592572 | 23593630 | + | OsARC_04g0018630.02 | OsARC_04g0018630.01,OsARC_04g0018630.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.397896 | 0.251120 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0495800 | RBH | 2.347427 | 2.219762 | 3.956104 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41850 | RBH | 1.329527 | 1.230838 | 0.871126 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0495800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018430 | RBH | 0.773927 | 8.940051 | 3.609640 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019210 | RBH | 0.492600 | 1.751366 | 1.481679 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018920 | RBH | 0.824342 | 7.776584 | 4.624689 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018880 | RBH | 11.008476 | 6.406968 | 9.834517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0387500 | RBH | 8.2717725 | 13.9006465 | 15.2363285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017660 | RBH | 0.238927 | 0.289459 | 0.703103 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0387700 | RBH | 9.4685505 | 12.4784475 | 12.033481 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018150 | RBH | 1.082835 | 0.099080 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018010 | RBH | 1.315944 | 12.218008 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018090 | RBH | 8.656523 | 17.437336 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018510 | RBH | 0.713712 | 0.607823 | 1.684347 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018660 | RBH | 0.215286 | 2.736737 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017930 | RBH | 0.645624 | 1.434500 | 0.948598 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017890 | RBH | 2.535546 | 3.019110 | 4.999418 |
