Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0018060 | OGI:04074020 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:23141324-23144174 | ||||||||
| Gene Symbol | OsSLA1 | ||||||||||
| DNA seq | GCGGCGCAGCCCAACCCAACCCCACCAAAACCCGCACCACCCCCCATCATCCGCTCCACCCCCCCGCAGTCTGGTCTCCCCACCTGGTCAAACCACTCCCCCCCACCCCCACCACCATGCCTCCCTCGCCGCCTCCCCTCCTCCTCCTCCTCGCGGTCCTCCTCGCAGCCGCGCCGGCGGCGGCGCAGTCGGCGACGCCCCGGGAGGACGACGTGCGGTGCCTCAAGGAGGTGAAGGCCGAGCTCCGGGACCCGGACGGGCGCCTCTCGGCGTGGAGCTTCGGCAACACCTCGGCGGGAGCCCTGTGCCTGCTGTCGGGGGTGTCGTGCTGGAACCCGCAGGAGTCGCGCATCATCGGCCTCTCGCTCTCCGGGTTCGGCCTCCAGGGCGGGATCCCCTCCGCGCTGCAGTTCTGCAGCGCCGCCACCACGCTCGACCTCTCCAACAACGCGCTGGTGGGGGTTATCCCGCCCGCGCTCTGCGACTGGATCCCGTTCGTCGTCAACCTCGACCTCTCCGGGAACCAGCTCTCCGGCCAGCTCCCCAGCGAGCTCGCCAACTGCCGCTTCCTCAACTCGCTCAAGCTCTCCGGCAACTCCTTCTCCGGCCAGATCCCCGACTCCCTCGGCCGCCTCGACCGCCTCAAGTCGCTCGACCTCTCCGACAACAGGCTCGACGGCCAGATCCCGCCCCAGCTCGCCACGTTCGGGAAGGACTCCTTCGCCGGTAACAAGGGCCTGTGCGGCCGCCCCGTGTCCTCGCGATGCGGCCGCGCGCTGAGCGGCGCGGGCCTCGGCATCGTCATCGCCGCGGGGGTGTTCGGAGCCGCCGCGTCGCTGCTCCTCGCCTTCTTCTTCTGGCGTTGCACCGGGAAGAGCAAGGGCGGTCGCCGCCGCCGCCGCGGAGGGAGCGAGTCCGGCGGCGGCTCCGCGGAGGACGGGAGCTGGTGGGCGGAGCGGCTGCGGGCGGCGCACAACCGGCTGGCGCCCGTCTCGCTGTTCCAGAAGCCGATCGTCAAGGTCAAGCTCGCCGACCTGATGGCGGCCACCCAGGACTTCAGCACGAGCCACATCGTGGTGGCCGGGAGCTCGCGGGCGGGGACGGCGTACCGAGCCGTGCTGCGCGACGGCTCCGCTCTGACGGTGAAGCGGCTCCACTCGTGCCCGTTGTCGGAGAAGGCGTTCCGGGCAGAGATGGGACGGGTTGGGCAGCTGCGGCACCCTAACATCGTGCCGCTGCTGGGGTTCTGTGTCGTTGAGGATGAGCGGCTGCTTGTGTACAAGCATATGGAGAGTGGAGCTCTTTCTTCGGTGATGAAGGAGCCAGGGGAGGCACCGCTGGATTGGGCGACACGGCTTCGGATTGCTGTCGGGGCGGCACGCGGTCTTGCTTGGCTGCACCATGGGTTCCAAGTTCCGCAAATTCACCAGAATTTGAGCTCAAGTGCAGTGCTTCTGGATGAGGACTATGAAGCTCGGTTCACAGATGTTGGGCTTACAAGGCTGGTCCGAATGGCACCAGGCGAGGGTGGAGATACAAGCCCCTTCCTGAATGGGGACTTCGGGGAGTATGGGTATGTCGCCCCAGAGTGTGCTAGCAATCCAGTTGCTACCATGAAGGGTGATGTGTATGCATTTGGTGTGATACTGCTCGAGCTCGTGAGTGGGCAGGAGGCTGCCACTGTAACGGGTGATGCGGCAGGTGAAGGATTCAAGGGGACATTGGTGGATTGGGTAAATCAGCTTAAGGCCTCCGGCCGGATCGGTGATGCTGTTCATAAATCATTGCGTGGGAATGGCCATGATTCAGAGATTGATGAGTTTGTGAAGATAGCTTTTGCGTGTATCATGGTTCACCCGAGGGAGAGGTTCTCAATGTACCGGGTTTACCACTCTCTGAAGAGCATTGGACAGGGTCGTGATGTCTCAGAGCAATTTGATGAGTTCCCGCTGGCCTATAACAAGGATGAATCAGATACCATGTAACTAATGGTGGTGGTCTTGCTTGGGATTGTGAACCGCCCTCGGTCAGGCTCAATGGATGCTTCTTTGTGTAGTCCTGCTACTTGAATTGATGAAGAGCATGCTGAGGCAACCATATTGGCATGATAATTATTGCTGGATGATCAATTCGATGCTTGCCTCATCTCCTGTCGAGATAATCGTGTAAGCTGTAAGATTTTAGTCTGTATTGTCTTTTTACATTATTGCTAGCGCTTGTAGTATCTCGCTTTATGCCTAAATTCTGATATGACCTTCCTTCTTGGAACAACTTGCCTCCTTCCCCAATCTCCTAAGAACAATATTGGCAGTGAACAAAATTAATCTTGACCAATTTATCTAAAGTTTACAGGAATGTTTCGCTCTGTCATGTACTCATGTCCTTGAAACCTTTTTCAAGTAGCATGTTATATCATTTGCCATCTTCTCTTTGTGAATTTTCTTGATGATACCATGTACCTTATTCACATCCACTTAAACAATGCTGTATAAACATGATTTATCATAGTTACTATTAAGTGCGCCCTTATCAGTTCATAATTTTTCAGTTTTGATGTCAAAATCTGTATAGCTATAAACTGGGTGTTATACTTGTCAACCTTGGACCATCTACCTGTGGTCACTGCTCTATATTCTGACCATACATTTGAAGCATCACGATTGGAAAATGTCACCTTCAGCCTCGCTTTTAGCCATTGTTTTCTAATTTGGTTGTGTACCGGTATCTTGAGTGTTATCTAGTTGTCTTACTTGATGTATTGTATGCTTTCTTTGATTTCAAAGTCAGCTCTTGGTGGCAAAGAACAATTATCAATTCCCTTTGCACATGCCGTTCCACAATAATTGTCACC
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| CDS seq | ATGCCTCCCTCGCCGCCTCCCCTCCTCCTCCTCCTCGCGGTCCTCCTCGCAGCCGCGCCGGCGGCGGCGCAGTCGGCGACGCCCCGGGAGGACGACGTGCGGTGCCTCAAGGAGGTGAAGGCCGAGCTCCGGGACCCGGACGGGCGCCTCTCGGCGTGGAGCTTCGGCAACACCTCGGCGGGAGCCCTGTGCCTGCTGTCGGGGGTGTCGTGCTGGAACCCGCAGGAGTCGCGCATCATCGGCCTCTCGCTCTCCGGGTTCGGCCTCCAGGGCGGGATCCCCTCCGCGCTGCAGTTCTGCAGCGCCGCCACCACGCTCGACCTCTCCAACAACGCGCTGGTGGGGGTTATCCCGCCCGCGCTCTGCGACTGGATCCCGTTCGTCGTCAACCTCGACCTCTCCGGGAACCAGCTCTCCGGCCAGCTCCCCAGCGAGCTCGCCAACTGCCGCTTCCTCAACTCGCTCAAGCTCTCCGGCAACTCCTTCTCCGGCCAGATCCCCGACTCCCTCGGCCGCCTCGACCGCCTCAAGTCGCTCGACCTCTCCGACAACAGGCTCGACGGCCAGATCCCGCCCCAGCTCGCCACGTTCGGGAAGGACTCCTTCGCCGGTAACAAGGGCCTGTGCGGCCGCCCCGTGTCCTCGCGATGCGGCCGCGCGCTGAGCGGCGCGGGCCTCGGCATCGTCATCGCCGCGGGGGTGTTCGGAGCCGCCGCGTCGCTGCTCCTCGCCTTCTTCTTCTGGCGTTGCACCGGGAAGAGCAAGGGCGGTCGCCGCCGCCGCCGCGGAGGGAGCGAGTCCGGCGGCGGCTCCGCGGAGGACGGGAGCTGGTGGGCGGAGCGGCTGCGGGCGGCGCACAACCGGCTGGCGCCCGTCTCGCTGTTCCAGAAGCCGATCGTCAAGGTCAAGCTCGCCGACCTGATGGCGGCCACCCAGGACTTCAGCACGAGCCACATCGTGGTGGCCGGGAGCTCGCGGGCGGGGACGGCGTACCGAGCCGTGCTGCGCGACGGCTCCGCTCTGACGGTGAAGCGGCTCCACTCGTGCCCGTTGTCGGAGAAGGCGTTCCGGGCAGAGATGGGACGGGTTGGGCAGCTGCGGCACCCTAACATCGTGCCGCTGCTGGGGTTCTGTGTCGTTGAGGATGAGCGGCTGCTTGTGTACAAGCATATGGAGAGTGGAGCTCTTTCTTCGGTGATGAAGGAGCCAGGGGAGGCACCGCTGGATTGGGCGACACGGCTTCGGATTGCTGTCGGGGCGGCACGCGGTCTTGCTTGGCTGCACCATGGGTTCCAAGTTCCGCAAATTCACCAGAATTTGAGCTCAAGTGCAGTGCTTCTGGATGAGGACTATGAAGCTCGGTTCACAGATGTTGGGCTTACAAGGCTGGTCCGAATGGCACCAGGCGAGGGTGGAGATACAAGCCCCTTCCTGAATGGGGACTTCGGGGAGTATGGGTATGTCGCCCCAGAGTGTGCTAGCAATCCAGTTGCTACCATGAAGGGTGATGTGTATGCATTTGGTGTGATACTGCTCGAGCTCGTGAGTGGGCAGGAGGCTGCCACTGTAACGGGTGATGCGGCAGGTGAAGGATTCAAGGGGACATTGGTGGATTGGGTAAATCAGCTTAAGGCCTCCGGCCGGATCGGTGATGCTGTTCATAAATCATTGCGTGGGAATGGCCATGATTCAGAGATTGATGAGTTTGTGAAGATAGCTTTTGCGTGTATCATGGTTCACCCGAGGGAGAGGTTCTCAATGTACCGGGTTTACCACTCTCTGAAGAGCATTGGACAGGGTCGTGATGTCTCAGAGCAATTTGATGAGTTCCCGCTGGCCTATAACAAGGATGAATCAGATACCATGTAA
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| Protein seq | MPPSPPPLLLLLAVLLAAAPAAAQSATPREDDVRCLKEVKAELRDPDGRLSAWSFGNTSAGALCLLSGVSCWNPQESRIIGLSLSGFGLQGGIPSALQFCSAATTLDLSNNALVGVIPPALCDWIPFVVNLDLSGNQLSGQLPSELANCRFLNSLKLSGNSFSGQIPDSLGRLDRLKSLDLSDNRLDGQIPPQLATFGKDSFAGNKGLCGRPVSSRCGRALSGAGLGIVIAAGVFGAAASLLLAFFFWRCTGKSKGGRRRRRGGSESGGGSAEDGSWWAERLRAAHNRLAPVSLFQKPIVKVKLADLMAATQDFSTSHIVVAGSSRAGTAYRAVLRDGSALTVKRLHSCPLSEKAFRAEMGRVGQLRHPNIVPLLGFCVVEDERLLVYKHMESGALSSVMKEPGEAPLDWATRLRIAVGAARGLAWLHHGFQVPQIHQNLSSSAVLLDEDYEARFTDVGLTRLVRMAPGEGGDTSPFLNGDFGEYGYVAPECASNPVATMKGDVYAFGVILLELVSGQEAATVTGDAAGEGFKGTLVDWVNQLKASGRIGDAVHKSLRGNGHDSEIDEFVKIAFACIMVHPRERFSMYRVYHSLKSIGQGRDVSEQFDEFPLAYNKDESDTM |
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| Function | Inactive LRR receptor-like serine/threonine-protein kinase BIR2 [UniProtKB/Swiss-Prot:Q9LSI9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0018060 | OsARC_04g0018060.01 | Chr04 | 23141324 | 23144174 | + | NAM | ||
| CDS seq | ATGCCTCCCTCGCCGCCTCCCCTCCTCCTCCTCCTCGCGGTCCTCCTCGCAGCCGCGCCGGCGGCGGCGCAGTCGGCGACGCCCCGGGAGGACGACGTGCGGTGCCTCAAGGAGGTGAAGGCCGAGCTCCGGGACCCGGACGGGCGCCTCTCGGCGTGGAGCTTCGGCAACACCTCGGCGGGAGCCCTGTGCCTGCTGTCGGGGGTGTCGTGCTGGAACCCGCAGGAGTCGCGCATCATCGGCCTCTCGCTCTCCGGGTTCGGCCTCCAGGGCGGGATCCCCTCCGCGCTGCAGTTCTGCAGCGCCGCCACCACGCTCGACCTCTCCAACAACGCGCTGGTGGGGGTTATCCCGCCCGCGCTCTGCGACTGGATCCCGTTCGTCGTCAACCTCGACCTCTCCGGGAACCAGCTCTCCGGCCAGCTCCCCAGCGAGCTCGCCAACTGCCGCTTCCTCAACTCGCTCAAGCTCTCCGGCAACTCCTTCTCCGGCCAGATCCCCGACTCCCTCGGCCGCCTCGACCGCCTCAAGTCGCTCGACCTCTCCGACAACAGGCTCGACGGCCAGATCCCGCCCCAGCTCGCCACGTTCGGGAAGGACTCCTTCGCCGGTAACAAGGGCCTGTGCGGCCGCCCCGTGTCCTCGCGATGCGGCCGCGCGCTGAGCGGCGCGGGCCTCGGCATCGTCATCGCCGCGGGGGTGTTCGGAGCCGCCGCGTCGCTGCTCCTCGCCTTCTTCTTCTGGCGTTGCACCGGGAAGAGCAAGGGCGGTCGCCGCCGCCGCCGCGGAGGGAGCGAGTCCGGCGGCGGCTCCGCGGAGGACGGGAGCTGGTGGGCGGAGCGGCTGCGGGCGGCGCACAACCGGCTGGCGCCCGTCTCGCTGTTCCAGAAGCCGATCGTCAAGGTCAAGCTCGCCGACCTGATGGCGGCCACCCAGGACTTCAGCACGAGCCACATCGTGGTGGCCGGGAGCTCGCGGGCGGGGACGGCGTACCGAGCCGTGCTGCGCGACGGCTCCGCTCTGACGGTGAAGCGGCTCCACTCGTGCCCGTTGTCGGAGAAGGCGTTCCGGGCAGAGATGGGACGGGTTGGGCAGCTGCGGCACCCTAACATCGTGCCGCTGCTGGGGTTCTGTGTCGTTGAGGATGAGCGGCTGCTTGTGTACAAGCATATGGAGAGTGGAGCTCTTTCTTCGGTGATGAAGGAGCCAGGGGAGGCACCGCTGGATTGGGCGACACGGCTTCGGATTGCTGTCGGGGCGGCACGCGGTCTTGCTTGGCTGCACCATGGGTTCCAAGTTCCGCAAATTCACCAGAATTTGAGCTCAAGTGCAGTGCTTCTGGATGAGGACTATGAAGCTCGGTTCACAGATGTTGGGCTTACAAGGCTGGTCCGAATGGCACCAGGCGAGGGTGGAGATACAAGCCCCTTCCTGAATGGGGACTTCGGGGAGTATGGGTATGTCGCCCCAGAGTGTGCTAGCAATCCAGTTGCTACCATGAAGGGTGATGTGTATGCATTTGGTGTGATACTGCTCGAGCTCGTGAGTGGGCAGGAGGCTGCCACTGTAACGGGTGATGCGGCAGGTGAAGGATTCAAGGGGACATTGGTGGATTGGGTAAATCAGCTTAAGGCCTCCGGCCGGATCGGTGATGCTGTTCATAAATCATTGCGTGGGAATGGCCATGATTCAGAGATTGATGAGTTTGTGAAGATAGCTTTTGCGTGTATCATGGTTCACCCGAGGGAGAGGTTCTCAATGTACCGGGTTTACCACTCTCTGAAGAGCATTGGACAGGGTCGTGATGTCTCAGAGCAATTTGATGAGTTCCCGCTGGCCTATAACAAGGATGAATCAGATACCATGTAA
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| Protein seq | MPPSPPPLLLLLAVLLAAAPAAAQSATPREDDVRCLKEVKAELRDPDGRLSAWSFGNTSAGALCLLSGVSCWNPQESRIIGLSLSGFGLQGGIPSALQFCSAATTLDLSNNALVGVIPPALCDWIPFVVNLDLSGNQLSGQLPSELANCRFLNSLKLSGNSFSGQIPDSLGRLDRLKSLDLSDNRLDGQIPPQLATFGKDSFAGNKGLCGRPVSSRCGRALSGAGLGIVIAAGVFGAAASLLLAFFFWRCTGKSKGGRRRRRGGSESGGGSAEDGSWWAERLRAAHNRLAPVSLFQKPIVKVKLADLMAATQDFSTSHIVVAGSSRAGTAYRAVLRDGSALTVKRLHSCPLSEKAFRAEMGRVGQLRHPNIVPLLGFCVVEDERLLVYKHMESGALSSVMKEPGEAPLDWATRLRIAVGAARGLAWLHHGFQVPQIHQNLSSSAVLLDEDYEARFTDVGLTRLVRMAPGEGGDTSPFLNGDFGEYGYVAPECASNPVATMKGDVYAFGVILLELVSGQEAATVTGDAAGEGFKGTLVDWVNQLKASGRIGDAVHKSLRGNGHDSEIDEFVKIAFACIMVHPRERFSMYRVYHSLKSIGQGRDVSEQFDEFPLAYNKDESDTM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.261566 | 0.577806 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0487200 | RBH | 4.334906 | 5.391147 | 4.135722 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41030 | RBH | 2.832627 | 3.485116 | 1.022792 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0487200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017840 | RBH | 0.763163 | 11.458638 | 7.491462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018640 | RBH | 0.209185 | 7.151871 | 2.953997 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018330 | RBH | 2.641817 | 11.035939 | 6.852427 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024290 | SBH | 0.034958 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018260 | RBH | 6.485259 | 16.302902 | 12.653682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0380300 | RBH | 10.569385 | 22.9101795 | 22.500599 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017050 | RBH | 0.354994 | 1.035223 | 1.061250 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0379900 | RBH | 10.3518605 | 27.7871115 | 27.9732335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017550 | RBH | 0.180987 | 0.488575 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017390 | RBH | 0.857345 | 13.217452 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017410 | RBH | 4.697436 | 24.888901 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017900 | RBH | 0.967010 | 1.731254 | 0.926718 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018030 | RBH | 0.577552 | 6.319731 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017340 | RBH | 0.683037 | 5.406799 | 3.599938 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017260 | RBH | 1.410893 | 18.583344 | 7.397100 |
