Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0013130 | OGI:04064430 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:19414298-19416070 | ||||||||
| Gene Symbol | PUB46, OsPUB46 | ||||||||||
| DNA seq | CCTCTTCCTCTCCACTTCCATTTCCAAGAATCGAACGGAGGCGTCTCGCCATCGCCATCGCCATCGCCATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGACGAGGAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCCTCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACTGGTCCTCCTCCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCCTTGTCCGCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGGCGTACCTCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGTGGCGCTGCCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGGAAGGGTGCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGGACGCGAACAAGAGGCGGGTCGCCGCTGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGTCCCTGGCGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGCTGGTGGAGTTCCTGCTCGCCAATGCCGCCGACGAGGCGAGGGAGGCGGTGGCCGAGTCGGCCGAGCTCGTCGCCGAGCTGGTGCGGCTCGTCGGCCCCGCCGACGAGAAGGGGAGCCTCGACGCGAGTGCCGTCGGCGCGGGCCTCTCCTGCCTCGCCACCATCTCCCGGTCGCGCCGCGCCGCGCGCGCCGAGATGGTCCGCGCCGGCGCCGTCCGCGCCGCGGCGCGCGCGCTGCGCGCCACGGCGGCGGACCCGGCCGCGTCCGCCAGGGCGCTCCGGATCCTCGAGTCCGCCGTCGGCTCCGCCGAGGGCCGCGCCGCGCTCTGCGAGGACGCCGAGGAGGCCGTACCCGCGGTGGTGGGCAGGATGATGAAGTCCGGCCGCGACGGCGCCGAGGCCGCGGTGGCCGTGCTCTGGGCGGTCTGCCACAAGTACAGGGACCGGCGCGCCGCCGACGCCGCGGCGGCGTCGGAGGGCGGCCTGACTCGCCTCCTCCTGCTGCTGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCGCTCGAGCTGCTCAAGATTTACAAGGTGAACGCCAAGAGCTGCCTCGCCGGCTACGACTCCAAGACCACCCACATCATGCCGTTCTGAACTGAAAAATCGAAGCTTTTGGTCAGGGCCATCATGGAACAGGAGATCAACCTTCGTGTTCCGTTGTTTTCTTTCTTTTCTTCTTTTGTTCTTTTCTAAATGTAATTTGATGATAGAGAAAACAGGAGGAGATCGAATTGATTTGTGGAGGGAAGAAGAAAAAAATAATCTGTACATGTGTAGGGAGAGTTTTGATAGGAAAAGAAAAATCAATGGGAAATTAACCGATGAGTTGTTGATTCTTAAGTCCAAATAGATTGCAATTGCGTGATCAGAAGTTCAGAACAGCCACATGTACATCTCCAAATCATTCACAACTTTTGGGAACAAAGTGAAATGTTCATTTCAA
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| CDS seq | ATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGACGAGGAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCCTCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACTGGTCCTCCTCCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCCTTGTCCGCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGGCGTACCTCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGTGGCGCTGCCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGGAAGGGTGCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGGACGCGAACAAGAGGCGGGTCGCCGCTGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGTCCCTGGCGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGCTGGTGGAGTTCCTGCTCGCCAATGCCGCCGACGAGGCGAGGGAGGCGGTGGCCGAGTCGGCCGAGCTCGTCGCCGAGCTGGTGCGGCTCGTCGGCCCCGCCGACGAGAAGGGGAGCCTCGACGCGAGTGCCGTCGGCGCGGGCCTCTCCTGCCTCGCCACCATCTCCCGGTCGCGCCGCGCCGCGCGCGCCGAGATGGTCCGCGCCGGCGCCGTCCGCGCCGCGGCGCGCGCGCTGCGCGCCACGGCGGCGGACCCGGCCGCGTCCGCCAGGGCGCTCCGGATCCTCGAGTCCGCCGTCGGCTCCGCCGAGGGCCGCGCCGCGCTCTGCGAGGACGCCGAGGAGGCCGTACCCGCGGTGGTGGGCAGGATGATGAAGTCCGGCCGCGACGGCGCCGAGGCCGCGGTGGCCGTGCTCTGGGCGGTCTGCCACAAGTACAGGGACCGGCGCGCCGCCGACGCCGCGGCGGCGTCGGAGGGCGGCCTGACTCGCCTCCTCCTGCTGCTGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCGCTCGAGCTGCTCAAGATTTACAAGGTGAACGCCAAGAGCTGCCTCGCCGGCTACGACTCCAAGACCACCCACATCATGCCGTTCTGA
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| Protein seq | MGRKESSTTTTTTAAAAAATRSMRLPPQHQALEVKIPSFFRCPISLDVMRSPVSLCTGVTYDRASIQRWLDSGNTTCPATMLPLPSTDLVPNLTLRSLISHWSSSSSPATSGDASVTSSPAGLVRQVASPDADPSAALRQLAAYLSDDDVDEFEKNALVGAGGAAEAVASVLRRKGEREVGVEGCEAAVRVLAAVVAMDGVEDANKRRVAAGLAADAAASAASLARVMRGASGLEARVDAARLVEFLLANAADEAREAVAESAELVAELVRLVGPADEKGSLDASAVGAGLSCLATISRSRRAARAEMVRAGAVRAAARALRATAADPAASARALRILESAVGSAEGRAALCEDAEEAVPAVVGRMMKSGRDGAEAAVAVLWAVCHKYRDRRAADAAAASEGGLTRLLLLLQSGCSPAARQMALELLKIYKVNAKSCLAGYDSKTTHIMPF |
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| Function | U-box domain-containing protein 29 [UniProtKB/Swiss-Prot:Q9LSA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0013130 | OsARC_04g0013130.01 | Chr04 | 19414298 | 19416070 | + | NAM | ||
| CDS seq | ATGGGCAGGAAGGAATCGTCGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGACGAGGAGCATGAGGCTGCCGCCGCAGCACCAGGCGCTGGAGGTGAAGATCCCGAGCTTCTTCCGGTGCCCCATCTCCCTCGACGTGATGCGCTCCCCGGTCAGCCTCTGCACCGGCGTCACCTACGACCGCGCCTCCATCCAGCGATGGCTCGACTCCGGCAACACCACCTGCCCCGCCACCATGCTCCCCCTCCCTTCCACCGACCTCGTCCCCAACCTCACCCTCCGCAGCCTCATCTCCCACTGGTCCTCCTCCTCCTCCCCCGCCACCTCCGGCGATGCCTCTGTCACTTCTTCCCCCGCGGGCCTTGTCCGCCAGGTCGCGTCGCCCGACGCCGACCCTTCCGCGGCGCTGCGCCAGCTCGCGGCGTACCTCTCGGACGACGACGTCGACGAGTTCGAGAAGAACGCGCTGGTGGGCGCCGGTGGCGCTGCCGAGGCCGTGGCCTCGGTGCTCCGGAGGAAGGGCGAGCGGGAGGTCGGCGTGGAAGGGTGCGAGGCGGCGGTGCGGGTGCTCGCCGCGGTCGTCGCGATGGATGGAGTCGAGGACGCGAACAAGAGGCGGGTCGCCGCTGGGCTCGCCGCGGACGCCGCGGCGTCGGCGGCGTCCCTGGCGCGCGTGATGCGCGGAGCGAGCGGGCTGGAGGCGAGGGTCGACGCGGCGAGGCTGGTGGAGTTCCTGCTCGCCAATGCCGCCGACGAGGCGAGGGAGGCGGTGGCCGAGTCGGCCGAGCTCGTCGCCGAGCTGGTGCGGCTCGTCGGCCCCGCCGACGAGAAGGGGAGCCTCGACGCGAGTGCCGTCGGCGCGGGCCTCTCCTGCCTCGCCACCATCTCCCGGTCGCGCCGCGCCGCGCGCGCCGAGATGGTCCGCGCCGGCGCCGTCCGCGCCGCGGCGCGCGCGCTGCGCGCCACGGCGGCGGACCCGGCCGCGTCCGCCAGGGCGCTCCGGATCCTCGAGTCCGCCGTCGGCTCCGCCGAGGGCCGCGCCGCGCTCTGCGAGGACGCCGAGGAGGCCGTACCCGCGGTGGTGGGCAGGATGATGAAGTCCGGCCGCGACGGCGCCGAGGCCGCGGTGGCCGTGCTCTGGGCGGTCTGCCACAAGTACAGGGACCGGCGCGCCGCCGACGCCGCGGCGGCGTCGGAGGGCGGCCTGACTCGCCTCCTCCTGCTGCTGCAGAGCGGGTGCTCGCCGGCGGCGAGGCAGATGGCGCTCGAGCTGCTCAAGATTTACAAGGTGAACGCCAAGAGCTGCCTCGCCGGCTACGACTCCAAGACCACCCACATCATGCCGTTCTGA
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| Protein seq | MGRKESSTTTTTTAAAAAATRSMRLPPQHQALEVKIPSFFRCPISLDVMRSPVSLCTGVTYDRASIQRWLDSGNTTCPATMLPLPSTDLVPNLTLRSLISHWSSSSSPATSGDASVTSSPAGLVRQVASPDADPSAALRQLAAYLSDDDVDEFEKNALVGAGGAAEAVASVLRRKGEREVGVEGCEAAVRVLAAVVAMDGVEDANKRRVAAGLAADAAASAASLARVMRGASGLEARVDAARLVEFLLANAADEAREAVAESAELVAELVRLVGPADEKGSLDASAVGAGLSCLATISRSRRAARAEMVRAGAVRAAARALRATAADPAASARALRILESAVGSAEGRAALCEDAEEAVPAVVGRMMKSGRDGAEAAVAVLWAVCHKYRDRRAADAAAASEGGLTRLLLLLQSGCSPAARQMALELLKIYKVNAKSCLAGYDSKTTHIMPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.097226 | 0.382487 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0418500 | RBH | 1.747447 | 2.010179 | 2.162468 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34140 | RBH | 0.783507 | 1.020242 | 0.345972 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0418500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012990 | RBH | 0.213234 | 6.572021 | 3.477536 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013820 | RBH | 0.0 | 3.530939 | 0.872444 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013520 | RBH | 0.700014 | 10.904851 | 3.870354 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020150 | RBH | 0.0 | 0.166682 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013460 | RBH | 1.716554 | 5.829901 | 4.145472 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0327100 | RBH | 4.590571 | 21.5503735 | 4.7840995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012370 | RBH | 0.272858 | 0.542801 | 0.504078 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0336700 | SBH | 0.6481185 | 2.391036 | 1.414597 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012970 | RBH | 0.230069 | 0.274132 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012560 | RBH | 0.453979 | 2.509112 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012590 | RBH | 1.269255 | 5.170093 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013150 | RBH | 0.156445 | 0.526251 | 0.577601 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013390 | RBH | 0.082637 | 4.536802 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012520 | RBH | 0.000000 | 0.000000 | 0.230730 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012530 | RBH | 0.389887 | 2.642052 | 4.329244 |
