Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsARC_04g0011660 | OGI:04061360 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:17969006-17971238 | ||||||||
Gene Symbol | OsSTA123 | ||||||||||
DNA seq | ATGGCCCGATGGACCCTCCGACTTCTCCTCTGGGTCCTCGCGTTCGGGGTGATTCTGAGCCAGCTCCTCCGCTACGCCACCATCTTCGCGCTCGCCTTCGGGTTCGGGGACGGTTCGCGGAGGAGGACGCTCTCGTCCGCATCGTCGCTGCCGCCGCCGTGGCGGCCTTCTTCCTCGCCTATTTCCGCTGAGCGGAGTCGCCGGCAGCGGCGGCGGCTTCCTCCACCGCGCCGCGCGCCGCCGGGCTCCTCGACGAGGGGGATGGCGGTGGGAACGCGTCTCCCCGCGCCACCGACGAAGGCGCAGCAGAGGCAGCGGGGAATCGGATGCGGCGGCGCTAGTTGCAGCGGTGGTGGCGCCTCCTCTTCGCCGCGGGGGATGACGGTGGCGGCGGGGCCGCGTCTCGCCATGCAGCAGACGTCGACGATCCTCGCGCCTCCGATGACGGCAAAGCAGAAGCAGCAGGGGATCGGGTTCGGCGGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGACGCCGATGGCGGCGGGGCCGCGTCTCGCCATGCAGAAGCCGTCGACGATCCTCGCGCCGCCGCTGACAACACAGCAGAAGCAGCAGGGGACCGGGTTCGGCAGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGATTCCGATGGTGGCGGGGCCGCGTCCTGCCTCGCAGAGCAAGCGGAAGAAGCCGAACGTCGCGCCGCCGCAGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGTGCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGCGGTGGCGGAGAAGGCGGCAGCTGCAGAGACTGAGGATGAGGCGCGGGCGAGGGAGCGCGCGGCGGCGGAGCAGATCGCGCACGAAGACGCGCGGAAGGACTTCGTGACGCCCTTGGCTTCCGTCGAGGACGCCATCAGCAGGTACGCGCGCTTCCCCTGCGCCGATCAATCTCCTCCTCCTCCTCCATCTGCCATCTCTCCGCTGCGCGCTGCCTTGTTGCTTCTCTCCTGCTTTTTTTTTTTTTTGGATTAGTTCTTCGCTGCGGTGAACAACACCAAGGTTGATCGCTGTCGAGTTGCATTTGCAATATTTCATCCGTGTTTTAGGGGGATTCGAGCTTGTTTAAGGTTTTTGGTGCGGCGATCATTCCTGTAGTGCACACGATTCATGAACTTCTAGTGCTTGCAAATCAATCCATGAACAATTTTAACGCAAAAAACATTGAGGAGTTTCAGAATTGTTCGCTGGGTTAGTTCATTAATCTCCCTGTGATGGATGAACAGGGAGAAGGGCACAGCCAGAAACTTTCATTTTTCCGTTTCATCGTGTTCTGACGAAATGATTTGGAATCTAATGTTTGACTAACTTAATTGAGAACGATGCATTTTGGATTAACAAGGACATTGATCTTTGATTAGTAATACTGATTAGGTGTTTTGGTTATGATCAATTTCTGATGGTATAATTTCTGGCACCACACATTAGAACATACAGTATAAATTTCTGTTGCCTCTGTTAGAATTATGACATGCTAATTAATCTCTATCCGGCCCGTTTGATCACAAAAACTGTTTTTATCTTCTTTCGTTCATGTCCTGCATTGTCAATAATCATGATGCAGTTCACAATCCTTAGCATTTCTCCAAGACTGATGTGTCATAGTGTCATTATGTATGTTCACTGCATGGTACCCCAAATTCCCAAATCCCAATGATACAGTGAAATTCATATCAATACATACAAGACTGATGCTGTCAAATATGTATGTTCGCACTTTTGATGAAAGAAAACACTCAAATTCATATCAAGCATTGCTGCCAATCTCTGAATTCTGTATTGGGCCAAGAAGTTTCTTATGCGCAATTGCTTTCATCCAGCTAACTACACTGAAAGTAATCATATACAGTGAGTATGTGCACAGTAACTATGCTGTTCATGGACTGATTTAATTTGCCCGCAGGCTGAAGGATCTGAAGGAGGAGTAGCAGAAGGAGGCGGCGGCGCTGCAGCGGCAGCTCATGCTAGAGCAACAGCAACAGATCATGGCGCGGCGCCGCAGCCGTTGAGGTAGTAGCACAGTACGCTTGCTAGAGCTTCGTGATTCGTGCTAGATTACATTGACCTGATTTCCTTTGCCATGCGCGATCGTTTTTTTGTTGGTGTTGGCTATTCGTGACTCTGTTCTGATCGATAGCGAGTGAATTGTGCA
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CDS seq | ATGGCCCGATGGACCCTCCGACTTCTCCTCTGGGTCCTCGCGTTCGGGGTGATTCTGAGCCAGCTCCTCCGCTACGCCACCATCTTCGCGCTCGCCTTCGGGTTCGGGGACGGTTCGCGGAGGAGGACGCTCTCGTCCGCATCGTCGCTGCCGCCGCCGTGGCGGCCTTCTTCCTCGCCTATTTCCGCTGAGCGGAGTCGCCGGCAGCGGCGGCGGCTTCCTCCACCGCGCCGCGCGCCGCCGGGCTCCTCGACGAGGGGGATGGCGGTGGGAACGCGTCTCCCCGCGCCACCGACGAAGGCGCAGCAGAGGCAGCGGGGAATCGGATGCGGCGGCGCTAGTTGCAGCGGTGGTGGCGCCTCCTCTTCGCCGCGGGGGATGACGGTGGCGGCGGGGCCGCGTCTCGCCATGCAGCAGACGTCGACGATCCTCGCGCCTCCGATGACGGCAAAGCAGAAGCAGCAGGGGATCGGGTTCGGCGGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGACGCCGATGGCGGCGGGGCCGCGTCTCGCCATGCAGAAGCCGTCGACGATCCTCGCGCCGCCGCTGACAACACAGCAGAAGCAGCAGGGGACCGGGTTCGGCAGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGATTCCGATGGTGGCGGGGCCGCGTCCTGCCTCGCAGAGCAAGCGGAAGAAGCCGAACGTCGCGCCGCCGCAGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGTGCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGCGGTGGCGGAGAAGGCGGCAGCTGCAGAGACTGAGGATGAGGCGCGGGCGAGGGAGCGCGCGGCGGCGGAGCAGATCGCGCACGAAGACGCGCGGAAGGACTTCGTGACGCCCTTGGCTTCCGTCGAGGACGCCATCAGCAGGCTGAAGGATCTGAAGGAGGAGTAG
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Protein seq | MARWTLRLLLWVLAFGVILSQLLRYATIFALAFGFGDGSRRRTLSSASSLPPPWRPSSSPISAERSRRQRRRLPPPRRAPPGSSTRGMAVGTRLPAPPTKAQQRQRGIGCGGASCSGGGASSSPRGMTVAAGPRLAMQQTSTILAPPMTAKQKQQGIGFGGAVAPPPSPRGTPMAAGPRLAMQKPSTILAPPLTTQQKQQGTGFGSAVAPPPSPRGIPMVAGPRPASQSKRKKPNVAPPQQQKIQGFGGAGAGAGPVPVSSSARAMAAVAEKAAAAETEDEARARERAAAEQIAHEDARKDFVTPLASVEDAISRLKDLKEE |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsARC_04g0011660 | OsARC_04g0011660.01 | Chr04 | 17969006 | 17971238 | + | NAM | ||
CDS seq | ATGGCCCGATGGACCCTCCGACTTCTCCTCTGGGTCCTCGCGTTCGGGGTGATTCTGAGCCAGCTCCTCCGCTACGCCACCATCTTCGCGCTCGCCTTCGGGTTCGGGGACGGTTCGCGGAGGAGGACGCTCTCGTCCGCATCGTCGCTGCCGCCGCCGTGGCGGCCTTCTTCCTCGCCTATTTCCGCTGAGCGGAGTCGCCGGCAGCGGCGGCGGCTTCCTCCACCGCGCCGCGCGCCGCCGGGCTCCTCGACGAGGGGGATGGCGGTGGGAACGCGTCTCCCCGCGCCACCGACGAAGGCGCAGCAGAGGCAGCGGGGAATCGGATGCGGCGGCGCTAGTTGCAGCGGTGGTGGCGCCTCCTCTTCGCCGCGGGGGATGACGGTGGCGGCGGGGCCGCGTCTCGCCATGCAGCAGACGTCGACGATCCTCGCGCCTCCGATGACGGCAAAGCAGAAGCAGCAGGGGATCGGGTTCGGCGGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGACGCCGATGGCGGCGGGGCCGCGTCTCGCCATGCAGAAGCCGTCGACGATCCTCGCGCCGCCGCTGACAACACAGCAGAAGCAGCAGGGGACCGGGTTCGGCAGCGCTGTGGCGCCTCCTCCTTCGCCGCGGGGGATTCCGATGGTGGCGGGGCCGCGTCCTGCCTCGCAGAGCAAGCGGAAGAAGCCGAACGTCGCGCCGCCGCAGCAGCAGAAGATTCAGGGCTTCGGCGGGGCCGGGGCTGGAGCTGGACCGGTGCCGGTGTCTTCCTCGGCGCGCGCGATGGCGGCGGTGGCGGAGAAGGCGGCAGCTGCAGAGACTGAGGATGAGGCGCGGGCGAGGGAGCGCGCGGCGGCGGAGCAGATCGCGCACGAAGACGCGCGGAAGGACTTCGTGACGCCCTTGGCTTCCGTCGAGGACGCCATCAGCAGGCTGAAGGATCTGAAGGAGGAGTAG
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Protein seq | MARWTLRLLLWVLAFGVILSQLLRYATIFALAFGFGDGSRRRTLSSASSLPPPWRPSSSPISAERSRRQRRRLPPPRRAPPGSSTRGMAVGTRLPAPPTKAQQRQRGIGCGGASCSGGGASSSPRGMTVAAGPRLAMQQTSTILAPPMTAKQKQQGIGFGGAVAPPPSPRGTPMAAGPRLAMQKPSTILAPPLTTQQKQQGTGFGSAVAPPPSPRGIPMVAGPRPASQSKRKKPNVAPPQQQKIQGFGGAGAGAGPVPVSSSARAMAAVAEKAAAAETEDEARARERAAAEQIAHEDARKDFVTPLASVEDAISRLKDLKEE
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0392500 | RBH | 0.0 | 0.0 | 0.489618 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32210 | RBH | 0.0 | 0.0 | 0.128330 |
Nipponbare | IRGSP 1.0 | RAP-db | Os04g0392500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011510 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012300 | RBH | 0.0 | 0.0 | 0.262115 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011990 | RBH | 0.0 | 0.0 | 1.619206 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011640 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011900 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0307100 | RBH | 0 | 0.0672255 | 0.081987 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010810 | RBH | 0.0 | 0.0 | 0.075072 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0303800 | SBH | 0.0827015 | 0.035689 | 0.030709 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011460 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011060 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011080 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011580 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011820 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010990 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010980 | SBH | 0.0 | 0.0 | 0.0 |