Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0009590 | OGI:04053580 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:15493537-15494989 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGAGCTGTCCCAACATAGCCATTGGACTCAAATGGAGTCTTGCATAGGAGAGCATGAACCATTTTGCCTTGCTCGATGGTACCAATTGTGGCACATGCATGCAGTAGAGCAGGAAACGTTGAAGCACTGCATTCAATAGACAATCGGCACATGACCGCAAACAGTTTTAGAGCTTCTGAAGACTGATCATTTTGAACATAACCTGAAATCATAGAGTTCCATGTTACCGTGTTCCTTTCATCCTTTATCTGTTCGAACAACTTCCGCCCCTCCTCCAATTTCCCATTCTGGAGAAGCACTGACATCATGGAGTTCAAGGTAACCATATTTCTCCGAGGCATCATCTCAAACATCCGCCGACAGTCTTCAAGCCTTCCCTCATCAGCGTACGCTTTTATCATCAGATTATAGGAACCTGAATCATGCTCTGTCATCTGCGAAAAAACCAACTTAGCATCCTCTGTCCTGCCCATTGATATAAACCCTGCAATGAGTGTATTGGATGTTATCAGGGATGGCATTTGCAAGCCATTGTAAACCATCACAGCATCATCCACAGCACCAGACCTACAGTAAAGATCGACAAGAGCGCTCGTGATTAACTGCTCCGACTCAAACCCACTTTGGATCAAGCATCCGTGAATCGATCGCCCAAATTCCAATGCTCCCATCTTCACACAAGCCCTCAAAACACTGTCATAAGTGAACTCATTGGGCATGACACCATCCTCAGCCAGCAGCTGCACAAACAGCTCCAGTGACTTGCAACAGTACTCGTTAGCGCCCCGCGCGTAGCCCGAGATGATGGCGGTCCACGCAAACAAATCACGAGATGGTGGCATCCGCTGAAGCAAATCCAGGGCGTCACTCAGCAAGTTGAACCTGACAAGCGCGACGACCATGGGGCTCCACAGCAGCTCGTTGTTGGCATGAAGGGTGTCGAAGAGCGTCCGTGCCGCATCGAGATCAAGGCACGAGGAGTAGAAGTCGAGAAGAGATGCCCCGACGACCGGGAAGTCGTCGGACCCGGACTTCACCACCTGGCAGTGCACCTGCCACCCCATGCGGAGGCAGCGCCCGCGGGCGCAGGCGCCGAGCGCCGACGCGTAGGTGGCCTCGTCGAGCCCCGCCGCGGAGCGGTGCATCCGCGCGGCCGTCCCGAGCGCGTCGCGGACGCGCCCGCGCCTCGCGTGGGCCGCTACCGTGGCGTTCCAGGACAGCGCGGCCCGGCGCCGCATTCCGTCGAACACCCCGCGTGCGGCCGAGCCGATCTGCTCGGCCGAAGCGGCGGCGGCGGCGGTGGTGGCGCCTGCATCCTGGTCGGCCTCGGCCTCGGGCTCAGTCGCGGCCGACGAGGGCCGGCGCGGTGGCCGCGGCGATAGCCTTCTTGCGTGGGTGGGCGGCGGCGGTATTGGTTTCCACCGGGCGAAATGCCTCGCCTTGGAGAGCAT
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| CDS seq | ATGCTCTCCAAGGCGAGGCATTTCGCCCGGTGGAAACCAATACCGCCGCCGCCCACCCACGCAAGAAGGCTATCGCCGCGGCCACCGCGCCGGCCCTCGTCGGCCGCGACTGAGCCCGAGGCCGAGGCCGACCAGGATGCAGGCGCCACCACCGCCGCCGCCGCCGCTTCGGCCGAGCAGATCGGCTCGGCCGCACGCGGGGTGTTCGACGGAATGCGGCGCCGGGCCGCGCTGTCCTGGAACGCCACGGTAGCGGCCCACGCGAGGCGCGGGCGCGTCCGCGACGCGCTCGGGACGGCCGCGCGGATGCACCGCTCCGCGGCGGGGCTCGACGAGGCCACCTACGCGTCGGCGCTCGGCGCCTGCGCCCGCGGGCGCTGCCTCCGCATGGGGTGGCAGGTGCACTGCCAGGTGGTGAAGTCCGGGTCCGACGACTTCCCGGTCGTCGGGGCATCTCTTCTCGACTTCTACTCCTCGTGCCTTGATCTCGATGCGGCACGGACGCTCTTCGACACCCTTCATGCCAACAACGAGCTGCTGTGGAGCCCCATGGTCGTCGCGCTTGTCAGGTTCAACTTGCTGAGTGACGCCCTGGATTTGCTTCAGCGGATGCCACCATCTCGTGATTTGTTTGCGTGGACCGCCATCATCTCGGGCTACGCGCGGGGCGCTAACGAGTACTGTTGCAAGTCACTGGAGCTGTTTGTGCAGCTGCTGGCTGAGGATGGTGTCATGCCCAATGAGTTCACTTATGACAGTGTTTTGAGGGCTTGTGTGAAGATGGGAGCATTGGAATTTGGGCGATCGATTCACGGATGCTTGATCCAAAGTGGGTTTGAGTCGGAGCAGTTAATCACGAGCGCTCTTGTCGATCTTTACTGTAGGTCTGGTGCTGTGGATGATGCTGTGATGGTTTACAATGGCTTGCAAATGCCATCCCTGATAACATCCAATACACTCATTGCAGGGTTTATATCAATGGGCAGGACAGAGGATGCTAAGTTGGTTTTTTCGCAGATGACAGAGCATGATTCAGGTTCCTATAATCTGATGATAAAAGCGTACGCTGATGAGGGAAGGCTTGAAGACTGTCGGCGGATGTTTGAGATGATGCCTCGGAGAAATATGGTTACCTTGAACTCCATGATGTCAGTGCTTCTCCAGAATGGGAAATTGGAGGAGGGGCGGAAGTTGTTCGAACAGATAAAGGATGAAAGGAACACGGTAACATGGAACTCTATGATTTCAGTGCTTCAACGTTTCCTGCTCTACTGCATGCATGTGCCACAATTGGTACCATCGAGCAAGGCAAAATGGTTCATGCTCTCCTATGCAAGACTCCATTTGAGTCCAATGGCTATGTTGGGACAGCTCTAG
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| Protein seq | MLSKARHFARWKPIPPPPTHARRLSPRPPRRPSSAATEPEAEADQDAGATTAAAAASAEQIGSAARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISVLQRFLLYCMHVPQLVPSSKAKWFMLSYARLHLSPMAMLGQL |
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| Function | Pentatricopeptide repeat-containing protein At3g02330, mitochondrial [UniProtKB/Swiss-Prot:Q9FWA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0009590 | OsARC_04g0009590.01 | Chr04 | 15493537 | 15494989 | - | NAM | ||
| CDS seq | ATGCTCTCCAAGGCGAGGCATTTCGCCCGGTGGAAACCAATACCGCCGCCGCCCACCCACGCAAGAAGGCTATCGCCGCGGCCACCGCGCCGGCCCTCGTCGGCCGCGACTGAGCCCGAGGCCGAGGCCGACCAGGATGCAGGCGCCACCACCGCCGCCGCCGCCGCTTCGGCCGAGCAGATCGGCTCGGCCGCACGCGGGGTGTTCGACGGAATGCGGCGCCGGGCCGCGCTGTCCTGGAACGCCACGGTAGCGGCCCACGCGAGGCGCGGGCGCGTCCGCGACGCGCTCGGGACGGCCGCGCGGATGCACCGCTCCGCGGCGGGGCTCGACGAGGCCACCTACGCGTCGGCGCTCGGCGCCTGCGCCCGCGGGCGCTGCCTCCGCATGGGGTGGCAGGTGCACTGCCAGGTGGTGAAGTCCGGGTCCGACGACTTCCCGGTCGTCGGGGCATCTCTTCTCGACTTCTACTCCTCGTGCCTTGATCTCGATGCGGCACGGACGCTCTTCGACACCCTTCATGCCAACAACGAGCTGCTGTGGAGCCCCATGGTCGTCGCGCTTGTCAGGTTCAACTTGCTGAGTGACGCCCTGGATTTGCTTCAGCGGATGCCACCATCTCGTGATTTGTTTGCGTGGACCGCCATCATCTCGGGCTACGCGCGGGGCGCTAACGAGTACTGTTGCAAGTCACTGGAGCTGTTTGTGCAGCTGCTGGCTGAGGATGGTGTCATGCCCAATGAGTTCACTTATGACAGTGTTTTGAGGGCTTGTGTGAAGATGGGAGCATTGGAATTTGGGCGATCGATTCACGGATGCTTGATCCAAAGTGGGTTTGAGTCGGAGCAGTTAATCACGAGCGCTCTTGTCGATCTTTACTGTAGGTCTGGTGCTGTGGATGATGCTGTGATGGTTTACAATGGCTTGCAAATGCCATCCCTGATAACATCCAATACACTCATTGCAGGGTTTATATCAATGGGCAGGACAGAGGATGCTAAGTTGGTTTTTTCGCAGATGACAGAGCATGATTCAGGTTCCTATAATCTGATGATAAAAGCGTACGCTGATGAGGGAAGGCTTGAAGACTGTCGGCGGATGTTTGAGATGATGCCTCGGAGAAATATGGTTACCTTGAACTCCATGATGTCAGTGCTTCTCCAGAATGGGAAATTGGAGGAGGGGCGGAAGTTGTTCGAACAGATAAAGGATGAAAGGAACACGGTAACATGGAACTCTATGATTTCAGTGCTTCAACGTTTCCTGCTCTACTGCATGCATGTGCCACAATTGGTACCATCGAGCAAGGCAAAATGGTTCATGCTCTCCTATGCAAGACTCCATTTGAGTCCAATGGCTATGTTGGGACAGCTCTAG
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| Protein seq | MLSKARHFARWKPIPPPPTHARRLSPRPPRRPSSAATEPEAEADQDAGATTAAAAASAEQIGSAARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISVLQRFLLYCMHVPQLVPSSKAKWFMLSYARLHLSPMAMLGQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0463800 | SBH | 0.266788 | 0.185774 | 0.148733 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35305 | SBH | 0.204456 | 0.085568 | 0.120697 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0463800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010130 | RBH | 0.0 | 0.0 | 0.230159 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009920 | RBH | 0.0 | 0.0 | 0.400863 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009430 | SBH | 0.135127 | 0.074211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009720 | RBH | 0.516048 | 2.499390 | 0.870320 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0267500 | RBH | 0.59027 | 1.4355615 | 0.423108 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008840 | RBH | 0.043002 | 0.071288 | 0.054775 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0264100 | RBH | 0.469422 | 0.8465135 | 3.178271 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009370 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009000 | RBH | 0.0 | 2.193924 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008860 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008900 | RBH | 0.591104 | 0.0 | 0.0 |
