Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_04g0004070 | OGI:04021110 | 3/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr04:6191577-6192055 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCTTTTTGTGGATATAACTAATGTGATTAATGCCAAGTTGACAAATAAGCATGCTGCGGTTATCCAAAGTGAAATCAATGTTCCAAAAGACCATGAGAACTATCAACAGATCAACAAGAACTCTACATCTAAGATTCAGAGAGCCTCAACTATTGGATTTGGTATCGTACTTATATTGGCTTTCTTTTTTTTAATATATGACATATTTGTTTTAGGCTAACATCAGCATTCTGATTTTGTGGTGCAGGCAATGAAAATAACGCTTCTGTCATTAGGCATGTGCGGCTACCATGTACAGACAAAGCCGAATTGTCGTACGGTACCCCCAACATGCATGAAGATGTTACTAATCTCTGTACGGTTGAACTAAAAAGGAAGCGTGCTAGAGAGAGGTACGCATCATTGACAAAAGAGCTAAAGGAAGATGGAAACAAGAAGAGACGTGATTCCAGAAAGTGGAGGAAGGATGGATCAATAG
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| CDS seq | ATGCTGCGGTTATCCAAAGTGAAATCAATGTTCCAAAAGACCATGAGAACTATCAACAGATCAACAAGAACTCTACATCTAAGATTCAGAGAGCCTCAACTATTGGATTTGGCAATGAAAATAACGCTTCTGTCATTAGGCATGTGCGGCTACCATGTACAGACAAAGCCGAATTGTCGTACGGTACCCCCAACATGCATGAAGATGTTACTAATCTCTGTACGGTTGAACTAA |
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| Protein seq | MLRLSKVKSMFQKTMRTINRSTRTLHLRFREPQLLDLAMKITLLSLGMCGYHVQTKPNCRTVPPTCMKMLLISVRLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_04g0004070 | OsARC_04g0004070.01 | Chr04 | 6191577 | 6192055 | + | NAM | ||
| CDS seq | ATGCTGCGGTTATCCAAAGTGAAATCAATGTTCCAAAAGACCATGAGAACTATCAACAGATCAACAAGAACTCTACATCTAAGATTCAGAGAGCCTCAACTATTGGATTTGGCAATGAAAATAACGCTTCTGTCATTAGGCATGTGCGGCTACCATGTACAGACAAAGCCGAATTGTCGTACGGTACCCCCAACATGCATGAAGATGTTACTAATCTCTGTACGGTTGAACTAA
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| Protein seq | MLRLSKVKSMFQKTMRTINRSTRTLHLRFREPQLLDLAMKITLLSLGMCGYHVQTKPNCRTVPPTCMKMLLISVRLN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0395500 | SBH | 0.000000 | 0.406230 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g30490 | SBH | 0.000000 | 0.273224 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0395500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004990 | SBH | 0.0 | 0.0 | 1.608415 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014840 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004980 | SBH | 0.0 | 0.0 | 2.527091 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015070 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004780 | SBH | 0.0 | 0.0 | 2.059397 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004860 | SBH | 0.0 | 0.0 | 0.261680 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004810 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004910 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0045240 | SBH | 0.0 | 0.0 | 0.236739 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004940 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014730 | SBH | 0.000000 | 3.461511 | 0.0 |
